Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.57464 * 2 1 4 4 C 1.53182 * 109.52048 * 120.15901 * 2 1 3 5 5 C 1.53176 * 109.03555 * 176.88716 * 4 2 1 6 6 C 1.53090 * 109.16341 * 303.01745 * 5 4 2 7 7 H 1.08996 * 109.48110 * 297.63001 * 6 5 4 8 8 C 1.52998 * 109.48188 * 177.60159 * 6 5 4 9 9 C 1.50704 * 109.47179 * 175.02400 * 8 6 5 10 10 O 1.21274 * 119.99751 * 359.97438 * 9 8 6 11 11 N 1.34772 * 119.99909 * 180.02562 * 9 8 6 12 12 C 1.46503 * 120.00080 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47350 * 179.97438 * 12 11 9 14 14 H 1.09008 * 109.67321 * 59.84384 * 13 12 11 15 15 C 1.53294 * 109.68182 * 180.39428 * 13 12 11 16 16 O 1.42966 * 109.22174 * 172.02811 * 15 13 12 17 17 C 1.42965 * 114.16487 * 297.42254 * 16 15 13 18 18 C 1.53299 * 109.22431 * 62.57944 * 17 16 15 19 19 N 1.47147 * 109.68227 * 299.32812 * 13 12 11 20 20 C 1.36936 * 120.98519 * 9.76158 * 19 13 12 21 21 H 1.08008 * 119.99633 * 328.30039 * 20 19 13 22 22 C 1.38808 * 120.00509 * 148.30362 * 20 19 13 23 23 N 1.31626 * 119.99585 * 349.25836 * 22 20 19 24 24 Si 1.86791 * 120.00400 * 169.25752 * 22 20 19 25 25 H 1.48502 * 109.47329 * 59.99646 * 24 22 20 26 26 H 1.48499 * 109.47417 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47237 * 299.99940 * 24 22 20 28 28 O 1.42902 * 109.41560 * 57.60927 * 6 5 4 29 29 C 1.42902 * 114.09987 * 298.84302 * 28 6 5 30 30 H 1.08994 * 109.47184 * 299.84225 * 1 2 3 31 31 H 1.09000 * 109.46561 * 59.84519 * 1 2 3 32 32 H 1.09000 * 109.46962 * 179.84238 * 1 2 3 33 33 H 1.08997 * 109.47180 * 180.15888 * 3 2 1 34 34 H 1.08999 * 109.46943 * 300.15635 * 3 2 1 35 35 H 1.08999 * 109.46926 * 60.15476 * 3 2 1 36 36 H 1.08998 * 109.54299 * 57.01893 * 4 2 1 37 37 H 1.09005 * 109.54115 * 296.75088 * 4 2 1 38 38 H 1.08994 * 109.52504 * 183.11113 * 5 4 2 39 39 H 1.09002 * 109.52305 * 62.92047 * 5 4 2 40 40 H 1.08999 * 109.47052 * 295.02297 * 8 6 5 41 41 H 1.09000 * 109.46671 * 55.02461 * 8 6 5 42 42 H 0.97001 * 119.99894 * 359.97438 * 11 9 8 43 43 H 1.08999 * 109.46938 * 299.99329 * 12 11 9 44 44 H 1.08997 * 109.47029 * 59.99010 * 12 11 9 45 45 H 1.08999 * 109.51357 * 291.95375 * 15 13 12 46 46 H 1.09005 * 109.51092 * 52.10518 * 15 13 12 47 47 H 1.09000 * 109.51205 * 302.65745 * 17 16 15 48 48 H 1.09001 * 109.51480 * 182.50763 * 17 16 15 49 49 H 1.09001 * 109.67919 * 187.97074 * 18 17 16 50 50 H 1.09003 * 109.67507 * 67.41951 * 18 17 16 51 51 H 0.97000 * 119.99613 * 180.02562 * 23 22 20 52 52 H 1.09005 * 109.48162 * 301.18036 * 29 28 6 53 53 H 1.09000 * 109.49592 * 181.14434 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0427 1.4416 0.0000 4 6 2.0419 -0.7254 1.2483 5 6 3.5716 -0.7872 1.1982 6 6 4.0044 -1.4817 -0.0956 7 1 3.6316 -2.5059 -0.1007 8 6 5.5319 -1.4942 -0.1817 9 6 5.9604 -2.2835 -1.3919 10 8 5.1262 -2.7869 -2.1140 11 7 7.2706 -2.4309 -1.6710 12 6 7.6872 -3.1978 -2.8477 13 6 9.2147 -3.2104 -2.9337 14 1 9.6291 -3.6685 -2.0356 15 6 9.6557 -4.0035 -4.1692 16 8 11.0666 -3.8546 -4.3452 17 6 11.4869 -2.5107 -4.5932 18 6 11.1396 -1.6412 -3.3793 19 7 9.7152 -1.8327 -3.0635 20 6 8.8802 -0.7606 -2.8949 21 1 7.8382 -0.8395 -3.1676 22 6 9.3730 0.4277 -2.3735 23 7 10.5786 0.4652 -1.8463 24 14 8.3256 1.9736 -2.4199 25 1 7.0692 1.7432 -1.6624 26 1 9.0750 3.0981 -1.8043 27 1 7.9993 2.3084 -3.8294 28 8 3.4695 -0.7743 -1.2162 29 6 2.0417 -0.7249 -1.2476 30 1 -0.3633 0.5113 0.8913 31 1 -0.3632 0.5163 -0.8886 32 1 -0.3633 -1.0277 -0.0028 33 1 3.1326 1.4396 -0.0028 34 1 1.6780 1.9569 -0.8886 35 1 1.6825 1.9552 0.8914 36 1 1.6367 -1.7369 1.2741 37 1 1.7279 -0.1825 2.1399 38 1 3.9417 -1.3501 2.0551 39 1 3.9780 0.2239 1.2224 40 1 5.8994 -0.4715 -0.2662 41 1 5.9426 -1.9549 0.7167 42 1 7.9378 -2.0286 -1.0931 43 1 7.3193 -4.2203 -2.7639 44 1 7.2768 -2.7365 -3.7459 45 1 9.4154 -5.0575 -4.0301 46 1 9.1369 -3.6242 -5.0496 47 1 10.9747 -2.1260 -5.4751 48 1 12.5640 -2.4908 -4.7591 49 1 11.3261 -0.5930 -3.6133 50 1 11.7484 -1.9415 -2.5265 51 1 10.9228 1.2955 -1.4817 52 1 1.6432 -1.7393 -1.2676 53 1 1.7158 -0.1886 -2.1389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280408607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -135.154851 kcal Electronic energy + Delta-G solvation = -31992.755398 eV Core-core repulsion = 27863.932385 eV Total energy + Delta-G solvation = -4128.823013 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.23683 -40.49646 -39.71687 -36.95912 -36.23367 -35.22623 -34.17354 -33.23157 -32.17443 -30.61559 -28.97620 -28.20814 -27.34969 -26.61101 -25.26001 -24.96890 -23.33528 -22.53435 -21.43495 -21.00280 -19.81790 -18.73261 -17.66665 -17.61219 -17.41332 -17.19479 -16.73386 -16.28452 -16.25878 -16.05762 -15.95393 -15.49437 -15.40079 -15.23038 -15.06038 -14.79317 -14.45273 -14.40481 -13.84745 -13.57861 -13.53249 -13.20267 -13.04952 -12.95724 -12.88677 -12.79504 -12.72944 -12.68116 -12.51178 -12.42563 -12.15198 -11.99944 -11.94205 -11.85221 -11.76317 -11.36701 -11.30402 -11.11705 -10.86176 -10.57281 -10.53518 -10.19625 -9.77457 -8.60153 -7.86576 -5.37571 1.42155 1.46006 1.51410 1.83462 2.40035 2.48692 2.89624 3.03558 3.29661 3.45201 3.67402 3.79086 3.79683 3.84116 4.05665 4.07407 4.15148 4.21966 4.28274 4.37760 4.39671 4.47941 4.53862 4.60139 4.61765 4.64997 4.66397 4.67849 4.70981 4.76027 4.78463 4.82178 4.89187 4.94696 5.00625 5.01625 5.04565 5.12210 5.12774 5.22921 5.29387 5.31186 5.39556 5.52314 5.60576 5.67534 5.72262 6.29717 6.38301 6.41546 6.79245 7.12248 7.44815 7.77354 8.33691 9.17633 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.003258 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.481236 B = 8591.838182 C = 9758.295490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C -0.137 4.137 4 C -0.107 4.107 5 C -0.149 4.149 6 C 0.110 3.890 7 H 0.055 0.945 8 C -0.134 4.134 9 C 0.507 3.493 10 O -0.584 6.584 11 N -0.701 5.701 12 C 0.144 3.856 13 C 0.127 3.873 14 H 0.039 0.961 15 C 0.057 3.943 16 O -0.397 6.397 17 C 0.046 3.954 18 C 0.150 3.850 19 N -0.605 5.605 20 C -0.241 4.241 21 H 0.064 0.936 22 C -0.027 4.027 23 N -0.925 5.925 24 Si 0.941 3.059 25 H -0.274 1.274 26 H -0.293 1.293 27 H -0.293 1.293 28 O -0.395 6.395 29 C 0.068 3.932 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.134 0.866 42 H 0.411 0.589 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.118 0.882 46 H 0.046 0.954 47 H 0.042 0.958 48 H 0.105 0.895 49 H 0.064 0.936 50 H 0.008 0.992 51 H 0.250 0.750 52 H 0.047 0.953 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 -3.782 6.552 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 C -0.194 4.194 4 C -0.144 4.144 5 C -0.186 4.186 6 C 0.052 3.948 7 H 0.073 0.927 8 C -0.173 4.173 9 C 0.295 3.705 10 O -0.465 6.465 11 N -0.351 5.351 12 C 0.020 3.980 13 C 0.021 3.979 14 H 0.056 0.944 15 C -0.021 4.021 16 O -0.315 6.315 17 C -0.032 4.032 18 C 0.024 3.976 19 N -0.331 5.331 20 C -0.371 4.371 21 H 0.082 0.918 22 C -0.224 4.224 23 N -0.570 5.570 24 Si 0.771 3.229 25 H -0.200 1.200 26 H -0.219 1.219 27 H -0.220 1.220 28 O -0.314 6.314 29 C -0.008 4.008 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.152 0.848 42 H 0.247 0.753 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.136 0.864 46 H 0.065 0.935 47 H 0.060 0.940 48 H 0.123 0.877 49 H 0.083 0.917 50 H 0.027 0.973 51 H 0.060 0.940 52 H 0.065 0.935 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.158 -4.070 5.988 15.902 hybrid contribution -0.048 1.568 0.117 1.574 sum -14.205 -2.501 6.106 15.663 Atomic orbital electron populations 1.21750 0.92401 1.02362 1.02640 1.21214 0.97077 0.96128 0.95610 1.21804 1.00733 0.94960 1.01878 1.21657 0.94250 1.00903 0.97586 1.22263 0.97342 1.01901 0.97119 1.21786 0.91407 0.95114 0.86480 0.92674 1.21802 0.96231 1.01709 0.97607 1.20910 0.82045 0.80276 0.87267 1.90613 1.52357 1.51144 1.52394 1.46058 1.07189 1.53621 1.28260 1.21038 0.93356 0.95298 0.88355 1.21544 0.92332 0.86945 0.97097 0.94356 1.22992 0.81594 1.01046 0.96509 1.87803 1.23362 1.27874 1.92500 1.23222 1.00127 0.82472 0.97377 1.21235 0.84402 0.98569 0.93397 1.44274 1.06128 1.00333 1.82339 1.19184 0.92946 0.90661 1.34318 0.91800 1.25546 0.97647 1.00785 0.98389 1.70085 1.18016 1.26288 1.42628 0.85760 0.78905 0.80905 0.77364 1.19986 1.21873 1.21976 1.87985 1.21009 1.75989 1.46416 1.22702 0.80513 0.99345 0.98290 0.91182 0.92351 0.92096 0.93800 0.93048 0.91397 0.91251 0.89769 0.88779 0.91255 0.89124 0.84764 0.75255 0.90449 0.93907 0.86425 0.93521 0.94005 0.87682 0.91736 0.97345 0.94028 0.93485 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.49 71.98 0.61 -1.34 16 2 C -0.10 -1.93 0.78 -52.09 -0.04 -1.97 16 3 C -0.14 -2.82 8.08 71.98 0.58 -2.24 16 4 C -0.11 -1.85 4.81 30.71 0.15 -1.70 16 5 C -0.15 -3.03 5.05 30.68 0.16 -2.88 16 6 C 0.11 3.06 2.19 30.62 0.07 3.13 16 7 H 0.06 1.58 7.95 -2.39 -0.02 1.57 16 8 C -0.13 -3.98 5.41 29.85 0.16 -3.82 16 9 C 0.51 18.94 7.71 87.66 0.68 19.62 16 10 O -0.58 -25.20 15.42 10.72 0.17 -25.03 16 11 N -0.70 -26.39 3.78 -463.07 -1.75 -28.14 16 12 C 0.14 5.34 4.45 86.38 0.38 5.72 16 13 C 0.13 4.88 3.21 44.97 0.14 5.02 16 14 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 15 C 0.06 1.92 6.29 72.08 0.45 2.38 16 16 O -0.40 -14.70 10.74 -148.98 -1.60 -16.30 16 17 C 0.05 1.72 6.98 72.08 0.50 2.22 16 18 C 0.15 6.84 5.37 86.36 0.46 7.30 16 19 N -0.60 -27.94 3.03 -673.72 -2.04 -29.98 16 20 C -0.24 -12.08 7.04 84.03 0.59 -11.48 16 21 H 0.06 3.32 5.84 -2.91 -0.02 3.31 16 22 C -0.03 -1.39 5.05 84.86 0.43 -0.96 16 23 N -0.92 -50.41 11.17 21.65 0.24 -50.17 16 24 Si 0.94 43.67 29.57 68.60 2.03 45.70 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 O -0.39 -13.10 9.06 -135.24 -1.23 -14.32 16 29 C 0.07 1.74 5.54 72.01 0.40 2.14 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.04 1.10 6.14 -2.39 -0.01 1.08 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.52 6.63 -2.39 -0.02 1.51 16 40 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 42 H 0.41 16.09 7.32 -92.71 -0.68 15.41 16 43 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.04 1.78 7.56 -2.39 -0.02 1.76 16 45 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 49 H 0.06 3.29 6.37 -2.39 -0.02 3.28 16 50 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 52 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 53 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -64.51 401.36 1.75 -62.76 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: 0.20 Total: 34.34 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 5.73 Total: 21.13 kcal Atomic # 7 Polarization: -104.74 SS G_CDS: -3.55 Total: -108.29 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -2.66 Total: -55.66 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -64.51 1.75 -62.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280408607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.391 kcal (2) G-P(sol) polarization free energy of solvation -64.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds