Wall clock time and date at job start Sat Apr 11 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99821 * 2 1 4 4 H 1.48501 * 109.47105 * 240.00317 * 3 2 1 5 5 H 1.48507 * 109.47114 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47217 * 120.00490 * 3 2 1 7 7 C 1.38813 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99527 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99753 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46901 * 180.02562 * 10 9 7 12 12 O 1.42900 * 109.44989 * 299.96712 * 11 10 9 13 13 C 1.53039 * 109.45971 * 180.02562 * 11 10 9 14 14 C 1.53192 * 109.31465 * 178.61668 * 13 11 10 15 15 N 1.46928 * 108.77544 * 54.63281 * 14 13 11 16 16 C 1.34772 * 120.63045 * 126.37150 * 15 14 13 17 17 O 1.21276 * 120.00137 * 359.97438 * 16 15 14 18 18 C 1.50708 * 119.99832 * 180.02562 * 16 15 14 19 19 C 1.53003 * 109.46901 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47109 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.48429 * 304.98138 * 20 19 18 22 22 C 1.53093 * 109.49305 * 184.94538 * 20 19 18 23 23 C 1.53174 * 109.16375 * 182.40343 * 22 20 19 24 24 C 1.53172 * 109.03844 * 56.98496 * 23 22 20 25 25 C 1.53096 * 109.16237 * 303.01800 * 24 23 22 26 26 O 1.42905 * 109.47961 * 65.00013 * 20 19 18 27 27 C 1.46930 * 118.73571 * 306.64687 * 15 14 13 28 28 C 1.52760 * 109.01233 * 53.31001 * 27 15 14 29 29 H 0.97001 * 120.00041 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99995 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46873 * 60.00865 * 10 9 7 32 32 H 1.08999 * 109.47382 * 300.00122 * 10 9 7 33 33 H 0.96710 * 113.99797 * 60.03781 * 12 11 10 34 34 H 1.08995 * 109.49958 * 58.66220 * 13 11 10 35 35 H 1.09006 * 109.52362 * 298.58500 * 13 11 10 36 36 H 1.09001 * 109.58544 * 294.84888 * 14 13 11 37 37 H 1.08999 * 109.70802 * 174.48877 * 14 13 11 38 38 H 1.08999 * 109.46882 * 60.00077 * 18 16 15 39 39 H 1.08994 * 109.47269 * 299.99677 * 18 16 15 40 40 H 1.08996 * 109.47159 * 59.99604 * 19 18 16 41 41 H 1.09007 * 109.47273 * 299.99859 * 19 18 16 42 42 H 1.09001 * 109.52010 * 302.31250 * 22 20 19 43 43 H 1.09007 * 109.51637 * 62.49773 * 22 20 19 44 44 H 1.09002 * 109.54277 * 176.85322 * 23 22 20 45 45 H 1.09006 * 109.54594 * 297.02146 * 23 22 20 46 46 H 1.08996 * 109.52430 * 183.11632 * 24 23 22 47 47 H 1.08993 * 109.52369 * 62.91915 * 24 23 22 48 48 H 1.09005 * 109.47867 * 297.62453 * 25 24 23 49 49 H 1.09001 * 109.48124 * 177.59174 * 25 24 23 50 50 H 1.09003 * 109.58223 * 173.14616 * 27 15 14 51 51 H 1.08999 * 109.59004 * 293.56459 * 27 15 14 52 52 H 1.08995 * 109.56340 * 185.55059 * 28 27 15 53 53 H 1.09002 * 109.35774 * 65.49202 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 8 0.2436 -4.7448 1.1656 13 6 1.8295 -6.1449 -0.0026 14 6 0.8314 -7.3066 0.0319 15 7 -0.1111 -7.1536 -1.0849 16 6 -0.3087 -8.1599 -1.9593 17 8 0.2945 -9.2039 -1.8288 18 6 -1.2784 -7.9874 -3.1000 19 6 -1.3144 -9.2678 -3.9368 20 6 -2.2993 -9.0930 -5.0944 21 1 -3.2740 -8.8032 -4.7019 22 6 -2.4286 -10.4130 -5.8589 23 6 -3.3694 -10.2136 -7.0512 24 6 -2.8278 -9.0829 -7.9312 25 6 -2.6831 -7.8141 -7.0867 26 8 -1.8204 -8.0772 -5.9782 27 6 -0.8294 -5.8806 -1.2336 28 6 0.1831 -4.7369 -1.2508 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.6854 -3.7148 0.8879 32 1 2.6842 -3.7140 -0.8921 33 1 -0.2717 -3.9292 1.2326 34 1 2.4742 -6.1930 0.8749 35 1 2.4373 -6.2141 -0.9048 36 1 0.2856 -7.2915 0.9753 37 1 1.3645 -8.2522 -0.0668 38 1 -0.9589 -7.1539 -3.7255 39 1 -2.2731 -7.7839 -2.7036 40 1 -1.6335 -10.1016 -3.3115 41 1 -0.3195 -9.4709 -4.3332 42 1 -1.4473 -10.7241 -6.2173 43 1 -2.8355 -11.1784 -5.1979 44 1 -3.4222 -11.1344 -7.6320 45 1 -4.3644 -9.9523 -6.6908 46 1 -3.5202 -8.8969 -8.7522 47 1 -1.8547 -9.3670 -8.3314 48 1 -3.6628 -7.5077 -6.7202 49 1 -2.2578 -7.0176 -7.6973 50 1 -1.3901 -5.8846 -2.1684 51 1 -1.5135 -5.7468 -0.3956 52 1 -0.3440 -3.7829 -1.2616 53 1 0.8060 -4.8191 -2.1415 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281635600.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:52 Heat of formation + Delta-G solvation = -162.083797 kcal Electronic energy + Delta-G solvation = -30724.056033 eV Core-core repulsion = 26594.065294 eV Total energy + Delta-G solvation = -4129.990740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.48195 -40.38033 -39.66680 -36.81215 -35.75464 -34.99331 -34.51066 -33.48634 -32.65596 -31.81913 -30.89883 -28.35425 -26.81890 -25.51089 -24.74061 -24.41788 -23.37537 -22.41925 -21.35679 -21.12365 -19.86887 -19.45657 -18.26334 -17.55056 -17.24580 -16.96449 -16.74734 -16.61592 -16.42144 -15.85754 -15.70863 -15.50497 -15.38228 -15.02677 -14.93044 -14.71659 -14.59861 -14.33408 -14.26829 -13.84821 -13.58305 -13.52030 -13.22167 -13.02050 -12.99852 -12.81399 -12.74688 -12.60680 -12.28085 -12.21149 -12.14636 -12.11594 -12.06113 -11.96080 -11.83122 -11.55735 -11.31280 -11.16366 -10.96427 -10.87843 -10.66422 -10.30747 -9.63062 -9.02086 -7.96535 -5.24670 1.48523 1.50018 1.56164 1.62705 2.01828 2.55124 2.88114 3.25359 3.40565 3.46247 3.64950 3.75227 3.76691 3.90877 3.94495 3.98557 4.04189 4.07719 4.15826 4.24095 4.31013 4.34377 4.37197 4.40726 4.50594 4.57921 4.62558 4.68809 4.74189 4.77336 4.80441 4.83695 4.87937 4.90695 4.95172 4.98451 5.03483 5.07728 5.10824 5.15107 5.17099 5.20996 5.29421 5.32755 5.42678 5.49105 5.55051 6.25301 6.37444 6.43227 6.74866 7.16269 7.33589 8.03956 8.30064 9.25840 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.002290 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.594241 B =12225.204011 C =13818.411892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.066 4.066 3 Si 0.969 3.031 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.734 5.734 10 C 0.128 3.872 11 C 0.138 3.862 12 O -0.562 6.562 13 C -0.111 4.111 14 C 0.122 3.878 15 N -0.607 5.607 16 C 0.511 3.489 17 O -0.586 6.586 18 C -0.131 4.131 19 C -0.090 4.090 20 C 0.091 3.909 21 H 0.072 0.928 22 C -0.151 4.151 23 C -0.122 4.122 24 C -0.156 4.156 25 C 0.054 3.946 26 O -0.400 6.400 27 C 0.118 3.882 28 C -0.151 4.151 29 H 0.253 0.747 30 H 0.377 0.623 31 H 0.019 0.981 32 H 0.025 0.975 33 H 0.382 0.618 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.096 0.904 50 H 0.108 0.892 51 H 0.080 0.920 52 H 0.075 0.925 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.304 -20.609 -12.206 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.259 4.259 3 Si 0.798 3.202 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.379 5.379 10 C 0.001 3.999 11 C 0.097 3.903 12 O -0.369 6.369 13 C -0.150 4.150 14 C -0.001 4.001 15 N -0.340 5.340 16 C 0.301 3.699 17 O -0.467 6.467 18 C -0.170 4.170 19 C -0.128 4.128 20 C 0.034 3.966 21 H 0.090 0.910 22 C -0.188 4.188 23 C -0.159 4.159 24 C -0.193 4.193 25 C -0.023 4.023 26 O -0.320 6.320 27 C -0.004 4.004 28 C -0.190 4.190 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.231 0.769 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.115 0.885 50 H 0.126 0.874 51 H 0.098 0.902 52 H 0.094 0.906 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.411 -21.535 -11.987 26.042 hybrid contribution 0.019 1.754 -0.024 1.754 sum -8.392 -19.781 -12.011 24.617 Atomic orbital electron populations 1.69749 1.06202 1.26258 1.58993 1.25453 0.96429 1.00677 1.03391 0.85285 0.77316 0.79567 0.77995 1.20634 1.21944 1.20761 1.19497 0.91361 0.85372 1.41869 0.91253 1.42355 1.05534 1.00578 1.89466 1.21434 0.94586 0.85897 0.97951 1.21221 0.89950 0.94023 0.85134 1.86378 1.61474 1.44978 1.44042 1.21808 0.97593 0.91999 1.03586 1.21406 0.91024 0.98330 0.89298 1.48239 1.43062 1.14739 1.27935 1.21269 0.82932 0.82473 0.83187 1.90643 1.51501 1.28925 1.75617 1.21681 0.99668 1.01186 0.94499 1.21307 0.99739 0.96921 0.94819 1.22174 0.97084 0.87969 0.89400 0.91007 1.22199 1.00657 0.97681 0.98308 1.21603 0.98870 0.99159 0.96297 1.22186 1.02119 0.95950 0.99093 1.22720 0.94698 0.97336 0.87507 1.87932 1.48837 1.57247 1.38002 1.21689 0.93837 0.80895 1.04023 1.22355 0.98996 0.99315 0.98295 0.93832 0.78859 0.96280 0.95745 0.76927 0.89579 0.90220 0.90827 0.89828 0.87822 0.86710 0.89766 0.92494 0.92129 0.89831 0.90748 0.90969 0.89465 0.92038 0.92245 0.88537 0.87387 0.90163 0.90610 0.91154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.76 13.06 21.65 0.28 -55.48 16 2 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 3 Si 0.97 45.03 29.55 68.60 2.03 47.05 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -34.94 5.07 -343.45 -1.74 -36.68 16 10 C 0.13 5.00 5.40 86.38 0.47 5.47 16 11 C 0.14 4.26 0.71 -10.76 -0.01 4.25 16 12 O -0.56 -17.94 11.71 -148.98 -1.74 -19.69 16 13 C -0.11 -3.02 5.11 30.67 0.16 -2.86 16 14 C 0.12 3.19 6.20 86.36 0.54 3.73 16 15 N -0.61 -15.08 2.98 -819.72 -2.44 -17.52 16 16 C 0.51 13.15 7.70 87.66 0.67 13.82 16 17 O -0.59 -19.04 15.39 -3.02 -0.05 -19.09 16 18 C -0.13 -2.45 3.94 29.85 0.12 -2.34 16 19 C -0.09 -1.68 4.21 30.59 0.13 -1.55 16 20 C 0.09 1.41 2.64 30.62 0.08 1.50 16 21 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 22 C -0.15 -2.00 5.42 30.68 0.17 -1.84 16 23 C -0.12 -1.29 6.03 30.71 0.19 -1.11 16 24 C -0.16 -1.76 6.14 30.68 0.19 -1.57 16 25 C 0.05 0.73 6.84 72.01 0.49 1.22 16 26 O -0.40 -7.55 9.94 -148.98 -1.48 -9.03 16 27 C 0.12 2.63 6.08 86.22 0.52 3.16 16 28 C -0.15 -4.25 4.91 30.53 0.15 -4.10 16 29 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.38 18.24 5.58 -92.70 -0.52 17.72 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.38 12.37 7.85 -74.05 -0.58 11.79 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.07 1.95 7.81 -2.39 -0.02 1.93 16 37 H 0.08 2.28 7.00 -2.39 -0.02 2.26 16 38 H 0.10 1.96 7.36 -2.39 -0.02 1.94 16 39 H 0.11 1.60 7.95 -2.39 -0.02 1.58 16 40 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 41 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.11 1.90 5.93 -2.39 -0.01 1.88 16 51 H 0.08 1.77 7.81 -2.39 -0.02 1.75 16 52 H 0.08 2.42 6.82 -2.39 -0.02 2.40 16 53 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -66.63 406.29 -0.18 -66.81 By element: Atomic # 1 Polarization: 41.94 SS G_CDS: -0.20 Total: 41.73 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 5.17 Total: 1.89 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -3.90 Total: -109.68 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -3.27 Total: -47.81 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -66.63 -0.18 -66.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281635600.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.277 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds