Wall clock time and date at job start Sat Apr 11 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99869 * 2 1 4 4 H 1.48501 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46527 * 299.99416 * 3 2 1 6 6 H 1.48498 * 109.47032 * 59.99394 * 3 2 1 7 7 C 1.38809 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00552 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99633 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99512 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.85325 * 336.18833 * 10 9 7 12 12 C 1.53773 * 113.69215 * 107.46461 * 10 9 7 13 13 C 1.53788 * 87.08174 * 139.98907 * 12 10 9 14 14 H 1.08994 * 113.68997 * 89.12918 * 13 12 10 15 15 C 1.53002 * 113.61208 * 220.01803 * 13 12 10 16 16 N 1.46496 * 109.47425 * 272.49762 * 15 13 12 17 17 C 1.34777 * 120.00266 * 180.02562 * 16 15 13 18 18 O 1.21274 * 120.00135 * 0.27234 * 17 16 15 19 19 C 1.50706 * 119.99766 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.46573 * 179.97438 * 19 17 16 21 21 C 1.53006 * 109.46997 * 180.02562 * 20 19 17 22 22 O 1.42896 * 109.47265 * 180.02562 * 21 20 19 23 23 C 1.42898 * 113.99963 * 179.97438 * 22 21 20 24 24 C 1.53179 * 109.54771 * 269.55373 * 23 22 21 25 25 C 1.53083 * 109.16573 * 183.15247 * 24 23 22 26 26 O 1.42900 * 109.41526 * 57.60812 * 25 24 23 27 27 C 1.42906 * 114.10022 * 298.84279 * 26 25 24 28 28 C 1.53085 * 109.41444 * 61.15485 * 27 26 25 29 29 C 1.53783 * 87.07910 * 334.56296 * 13 12 10 30 30 H 0.97001 * 120.00419 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00361 * 359.97438 * 9 7 2 32 32 H 1.08999 * 113.61977 * 25.43899 * 12 10 9 33 33 H 1.09001 * 113.61349 * 254.53465 * 12 10 9 34 34 H 1.09004 * 109.46930 * 152.49584 * 15 13 12 35 35 H 1.09000 * 109.47312 * 32.49528 * 15 13 12 36 36 H 0.96999 * 119.99691 * 359.97438 * 16 15 13 37 37 H 1.09000 * 109.47161 * 299.99737 * 19 17 16 38 38 H 1.09001 * 109.46740 * 59.99879 * 19 17 16 39 39 H 1.09000 * 109.47486 * 299.99934 * 20 19 17 40 40 H 1.09001 * 109.47362 * 60.00657 * 20 19 17 41 41 H 1.09000 * 109.46866 * 300.00212 * 21 20 19 42 42 H 1.08996 * 109.47261 * 59.99820 * 21 20 19 43 43 H 1.09007 * 109.54376 * 29.82074 * 23 22 21 44 44 H 1.08996 * 109.51939 * 303.06157 * 24 23 22 45 45 H 1.08997 * 109.51670 * 63.24611 * 24 23 22 46 46 H 1.09004 * 109.48348 * 297.62934 * 25 24 23 47 47 H 1.08997 * 109.48578 * 177.59623 * 25 24 23 48 48 H 1.08998 * 109.47768 * 301.17289 * 27 26 25 49 49 H 1.09000 * 109.49216 * 181.14768 * 27 26 25 50 50 H 1.09001 * 109.52303 * 182.48843 * 28 27 26 51 51 H 1.09003 * 109.52204 * 62.29748 * 28 27 26 52 52 H 1.08996 * 113.60767 * 139.97995 * 29 13 12 53 53 H 1.08998 * 113.61648 * 270.79946 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0659 -3.5640 -0.4031 12 6 2.0001 -4.4026 1.3452 13 6 1.8495 -5.6979 0.5300 14 1 2.7995 -6.1642 0.2693 15 6 0.8472 -6.6862 1.1296 16 7 1.5292 -7.5441 2.1017 17 6 0.8399 -8.4972 2.7598 18 8 -0.3438 -8.6479 2.5437 19 6 1.5418 -9.3800 3.7594 20 6 0.5394 -10.3683 4.3591 21 6 1.2517 -11.2642 5.3744 22 8 0.3158 -12.1876 5.9340 23 6 0.8821 -13.0761 6.8993 24 6 1.3802 -14.3440 6.1988 25 6 1.9130 -15.3222 7.2489 26 8 0.8809 -15.6138 8.1933 27 6 0.4090 -14.4730 8.9130 28 6 -0.1842 -13.4607 7.9296 29 6 1.2606 -4.8290 -0.5939 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 1.1220 -4.1581 1.9428 33 1 2.9284 -4.3502 1.9141 34 1 0.4244 -7.3017 0.3355 35 1 0.0484 -6.1366 1.6276 36 1 2.4770 -7.4267 2.2712 37 1 2.3405 -9.9294 3.2612 38 1 1.9645 -8.7648 4.5537 39 1 -0.2591 -9.8186 4.8574 40 1 0.1164 -10.9836 3.5650 41 1 2.0505 -11.8139 4.8765 42 1 1.6746 -10.6488 6.1684 43 1 1.7150 -12.5849 7.4026 44 1 0.5569 -14.8067 5.6545 45 1 2.1786 -14.0859 5.5031 46 1 2.7621 -14.8743 7.7653 47 1 2.2295 -16.2435 6.7602 48 1 1.2385 -14.0140 9.4510 49 1 -0.3579 -14.7825 9.6230 50 1 -0.5045 -12.5709 8.4717 51 1 -1.0390 -13.9056 7.4203 52 1 1.5919 -5.1209 -1.5904 53 1 0.1801 -4.7023 -0.5273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316621683.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:32 Heat of formation + Delta-G solvation = -144.948100 kcal Electronic energy + Delta-G solvation = -28245.683982 eV Core-core repulsion = 24116.436302 eV Total energy + Delta-G solvation = -4129.247680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.94605 -40.57269 -39.80538 -38.55313 -36.07012 -34.99039 -34.94066 -33.07602 -32.17891 -32.11023 -29.38745 -27.40848 -26.45440 -25.76492 -25.11581 -24.58419 -23.01366 -22.33290 -21.52255 -21.17853 -20.41672 -19.05605 -18.31441 -17.79360 -17.29606 -17.17579 -16.98583 -16.89497 -16.52988 -16.28979 -16.04597 -15.82335 -15.48743 -15.26328 -15.04592 -14.94311 -14.62069 -14.41562 -14.05028 -13.71080 -13.42876 -13.25194 -13.23348 -13.03643 -13.00958 -12.91361 -12.66477 -12.51016 -12.39519 -12.23300 -12.15841 -12.05758 -11.87584 -11.68637 -11.59118 -11.55024 -11.34237 -11.11209 -10.87157 -10.77095 -10.66925 -10.44390 -10.04660 -8.97791 -7.94736 -5.23214 1.47500 1.48172 1.58270 1.67629 2.15038 2.56656 2.66827 2.95848 3.37623 3.66666 3.74051 3.75398 3.76374 3.80273 3.93374 3.96417 4.01429 4.04268 4.15052 4.25223 4.26153 4.33270 4.36703 4.42909 4.47031 4.51092 4.53258 4.57519 4.58755 4.65958 4.72928 4.75598 4.80970 4.82965 4.98148 4.99416 5.03990 5.06194 5.08624 5.13375 5.18626 5.23112 5.28166 5.38317 5.46649 5.54390 5.74435 6.22046 6.27674 6.29886 6.61838 7.31565 7.33055 8.11519 8.33048 9.29126 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.029384 B = 0.001234 C = 0.001217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.659101 B =22689.405921 C =22994.097784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.142 3.858 11 H 0.083 0.917 12 C -0.152 4.152 13 C -0.093 4.093 14 H 0.125 0.875 15 C 0.137 3.863 16 N -0.714 5.714 17 C 0.502 3.498 18 O -0.596 6.596 19 C -0.125 4.125 20 C -0.101 4.101 21 C 0.064 3.936 22 O -0.406 6.406 23 C 0.084 3.916 24 C -0.176 4.176 25 C 0.061 3.939 26 O -0.406 6.406 27 C 0.063 3.937 28 C -0.155 4.155 29 C -0.139 4.139 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.418 0.582 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.068 0.932 47 H 0.106 0.894 48 H 0.069 0.931 49 H 0.109 0.891 50 H 0.085 0.915 51 H 0.062 0.938 52 H 0.078 0.922 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.519 -32.434 15.802 37.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.032 3.968 11 H 0.101 0.899 12 C -0.193 4.193 13 C -0.112 4.112 14 H 0.143 0.857 15 C 0.012 3.988 16 N -0.366 5.366 17 C 0.291 3.709 18 O -0.477 6.477 19 C -0.165 4.165 20 C -0.140 4.140 21 C -0.012 4.012 22 O -0.326 6.326 23 C 0.027 3.973 24 C -0.214 4.214 25 C -0.016 4.016 26 O -0.326 6.326 27 C -0.013 4.013 28 C -0.193 4.193 29 C -0.179 4.179 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.256 0.744 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.086 0.914 47 H 0.124 0.876 48 H 0.087 0.913 49 H 0.127 0.873 50 H 0.104 0.896 51 H 0.081 0.919 52 H 0.097 0.903 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.596 -32.573 15.601 37.369 hybrid contribution -0.101 1.701 -0.205 1.716 sum 9.496 -30.872 15.396 35.781 Atomic orbital electron populations 1.69834 1.06794 1.25927 1.59869 1.25594 0.96327 1.01255 1.03950 0.85079 0.78431 0.79816 0.76486 1.18613 1.22233 1.22332 1.19794 0.91670 0.85353 1.40535 0.90132 1.42658 1.05343 1.01313 1.87520 1.21984 0.95665 0.83799 0.95311 0.89937 1.23709 1.01065 0.96042 0.98462 1.22467 0.99454 0.92921 0.96372 0.85733 1.21183 0.94839 0.91604 0.91146 1.45931 1.14056 1.34562 1.42066 1.21386 0.86974 0.80807 0.81766 1.90712 1.18282 1.71493 1.67191 1.21550 0.99269 0.97348 0.98290 1.21143 0.98114 0.96656 0.98044 1.22612 0.91633 0.90848 0.96114 1.87930 1.37483 1.48760 1.58453 1.22239 0.96187 0.89746 0.89159 1.22707 1.02262 0.96668 0.99753 1.22697 0.89581 0.99911 0.89368 1.87924 1.56120 1.33610 1.54898 1.22695 0.99526 0.85960 0.93125 1.22315 0.98903 1.00660 0.97410 1.23344 0.99818 0.96121 0.98603 0.94145 0.79749 0.92863 0.91084 0.92059 0.94025 0.74432 0.85325 0.85921 0.92915 0.92558 0.91287 0.91437 0.90287 0.91993 0.89348 0.91374 0.87580 0.91327 0.87340 0.89605 0.91904 0.90325 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 3 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 7 C -0.24 -13.29 9.97 84.03 0.84 -12.45 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 9 N -0.73 -36.69 5.40 -320.45 -1.73 -38.42 16 10 C 0.14 5.25 4.48 45.52 0.20 5.46 16 11 H 0.08 2.93 8.10 -2.39 -0.02 2.91 16 12 C -0.15 -4.66 7.43 31.12 0.23 -4.43 16 13 C -0.09 -2.16 3.76 -10.26 -0.04 -2.20 16 14 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 15 C 0.14 3.34 5.51 86.38 0.48 3.81 16 16 N -0.71 -13.24 5.56 -463.06 -2.57 -15.81 16 17 C 0.50 10.96 7.83 87.66 0.69 11.65 16 18 O -0.60 -19.67 15.98 -3.01 -0.05 -19.71 16 19 C -0.13 -1.46 5.70 29.85 0.17 -1.29 16 20 C -0.10 -1.69 4.87 30.60 0.15 -1.54 16 21 C 0.06 0.76 5.75 71.98 0.41 1.17 16 22 O -0.41 -7.02 10.00 -148.98 -1.49 -8.51 16 23 C 0.08 1.01 2.70 30.71 0.08 1.09 16 24 C -0.18 -1.87 5.76 30.68 0.18 -1.70 16 25 C 0.06 0.54 6.84 72.01 0.49 1.04 16 26 O -0.41 -5.60 10.77 -148.98 -1.60 -7.20 16 27 C 0.06 0.60 6.84 72.01 0.49 1.09 16 28 C -0.16 -1.85 5.79 30.68 0.18 -1.68 16 29 C -0.14 -4.20 7.39 31.12 0.23 -3.97 16 30 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.37 20.37 7.93 -92.71 -0.73 19.64 16 32 H 0.05 1.92 7.90 -2.39 -0.02 1.90 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.04 1.27 7.84 -2.39 -0.02 1.25 16 36 H 0.42 4.67 8.47 -92.71 -0.79 3.89 16 37 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 41 H 0.07 0.54 7.99 -2.39 -0.02 0.52 16 42 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 43 H 0.08 0.65 7.79 -2.38 -0.02 0.64 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 0.68 7.99 -2.39 -0.02 0.66 16 46 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 47 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 51 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 53 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 Total: -1.00 -77.72 426.13 -0.52 -78.25 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.64 Total: 31.53 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 5.25 Total: -8.04 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -4.02 Total: -114.26 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -3.14 Total: -35.42 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -77.72 -0.52 -78.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316621683.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.702 kcal (2) G-P(sol) polarization free energy of solvation -77.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds