Wall clock time and date at job start Sat Apr 11 2020 06:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.66261 * 2 1 4 4 N 1.46499 * 109.46986 * 298.26434 * 3 2 1 5 5 C 1.36937 * 119.99914 * 179.97438 * 4 3 2 6 6 H 1.07995 * 119.99977 * 359.97438 * 5 4 3 7 7 C 1.38806 * 119.99877 * 179.97438 * 5 4 3 8 8 N 1.31618 * 120.00114 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00179 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47499 * 90.00015 * 9 7 5 11 11 H 1.48506 * 109.46995 * 209.99577 * 9 7 5 12 12 H 1.48500 * 109.47036 * 329.99461 * 9 7 5 13 13 C 1.54625 * 110.73783 * 236.80781 * 2 1 3 14 14 C 1.54001 * 105.04198 * 263.51571 * 13 2 1 15 15 N 1.47488 * 107.08887 * 1.30413 * 14 13 2 16 16 C 1.34777 * 127.03504 * 154.51317 * 15 14 13 17 17 O 1.21279 * 120.00162 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.99761 * 0.03015 * 16 15 14 19 19 C 1.53002 * 109.46919 * 179.97438 * 18 16 15 20 20 O 1.42905 * 109.47079 * 179.97438 * 19 18 16 21 21 C 1.42899 * 113.99778 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.46889 * 180.02562 * 21 20 19 23 23 H 1.09000 * 110.33180 * 307.24749 * 22 21 20 24 24 C 1.54483 * 110.37248 * 185.00269 * 22 21 20 25 25 C 1.54509 * 104.06293 * 217.19082 * 24 22 21 26 26 C 1.54473 * 104.06144 * 359.97438 * 25 24 22 27 27 O 1.44422 * 110.37397 * 69.62320 * 22 21 20 28 28 C 1.48122 * 105.92942 * 334.78298 * 15 14 13 29 29 H 1.08994 * 109.47721 * 181.73317 * 1 2 3 30 30 H 1.08998 * 109.47302 * 301.74377 * 1 2 3 31 31 H 1.09000 * 109.46925 * 61.73701 * 1 2 3 32 32 H 1.08998 * 109.46598 * 58.25724 * 3 2 1 33 33 H 1.08998 * 109.47175 * 178.26295 * 3 2 1 34 34 H 0.97006 * 120.00436 * 359.97438 * 4 3 2 35 35 H 0.97006 * 120.00688 * 180.02562 * 8 7 5 36 36 H 1.08994 * 110.32535 * 144.62227 * 13 2 1 37 37 H 1.08995 * 110.40908 * 22.45031 * 13 2 1 38 38 H 1.09006 * 109.90878 * 241.94505 * 14 13 2 39 39 H 1.09006 * 109.91462 * 120.66667 * 14 13 2 40 40 H 1.09004 * 109.47237 * 59.99891 * 18 16 15 41 41 H 1.09004 * 109.47662 * 299.99732 * 18 16 15 42 42 H 1.09004 * 109.46930 * 60.00101 * 19 18 16 43 43 H 1.09000 * 109.47312 * 300.00045 * 19 18 16 44 44 H 1.08997 * 109.47442 * 300.00036 * 21 20 19 45 45 H 1.08997 * 109.47171 * 60.00232 * 21 20 19 46 46 H 1.09005 * 110.50990 * 335.83447 * 24 22 21 47 47 H 1.08997 * 110.51485 * 98.54104 * 24 22 21 48 48 H 1.09001 * 110.51342 * 118.64601 * 25 24 22 49 49 H 1.08998 * 110.50700 * 241.21391 * 25 24 22 50 50 H 1.09001 * 110.37559 * 142.81504 * 26 25 24 51 51 H 1.09011 * 110.37318 * 265.03760 * 26 25 24 52 52 H 1.08995 * 110.65968 * 157.50629 * 28 15 14 53 53 H 1.09003 * 110.65753 * 280.61864 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 7 1.6302 2.1193 -1.2165 5 6 1.9939 3.4210 -1.4367 6 1 2.6046 3.9407 -0.7133 7 6 1.5778 4.0724 -2.5896 8 7 1.9270 5.3237 -2.8010 9 14 0.5209 3.1736 -3.8405 10 1 -0.9133 3.3705 -3.5096 11 1 0.7942 3.7119 -5.1973 12 1 0.8417 1.7240 -3.8092 13 6 2.0775 -0.7917 -1.2101 14 6 2.3761 -2.2003 -0.6642 15 7 1.9870 -2.2053 0.7584 16 6 1.6218 -3.2723 1.4965 17 8 1.3247 -3.1293 2.6636 18 6 1.5829 -4.6429 0.8714 19 6 1.1406 -5.6681 1.9176 20 8 1.1031 -6.9678 1.3247 21 6 0.6991 -8.0043 2.2217 22 6 0.6956 -9.3446 1.4838 23 1 0.1034 -9.2731 0.5715 24 6 0.1424 -10.4603 2.3980 25 6 1.0015 -11.6951 2.0451 26 6 1.9715 -11.1796 0.9591 27 8 2.0465 -9.7538 1.1783 28 6 2.0732 -0.7967 1.2084 29 1 -0.3634 -1.0271 0.0311 30 1 -0.3634 0.5407 0.8739 31 1 -0.3633 0.4866 -0.9052 32 1 1.6922 1.9623 0.8740 33 1 3.1592 1.4091 0.0312 34 1 1.0814 1.6526 -1.8662 35 1 1.6359 5.7791 -3.6065 36 1 2.9909 -0.3287 -1.5834 37 1 1.3291 -0.8428 -2.0009 38 1 3.4402 -2.4172 -0.7588 39 1 1.7934 -2.9417 -1.2110 40 1 2.5759 -4.9036 0.5050 41 1 0.8773 -4.6436 0.0406 42 1 0.1477 -5.4076 2.2844 43 1 1.8464 -5.6674 2.7481 44 1 1.3957 -8.0525 3.0586 45 1 -0.3029 -7.7919 2.5947 46 1 0.2705 -10.1931 3.4470 47 1 -0.9079 -10.6498 2.1766 48 1 1.5542 -12.0385 2.9196 49 1 0.3755 -12.4959 1.6516 50 1 2.9546 -11.6341 1.0817 51 1 1.5769 -11.3928 -0.0344 52 1 1.4488 -0.6347 2.0869 53 1 3.1076 -0.5214 1.4143 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324753985.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:13 Heat of formation + Delta-G solvation = -140.781513 kcal Electronic energy + Delta-G solvation = -29517.489765 eV Core-core repulsion = 25388.422762 eV Total energy + Delta-G solvation = -4129.067003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.38101 -40.48221 -39.51110 -38.51062 -36.60756 -34.41224 -33.35317 -32.97786 -32.38977 -31.05668 -30.66539 -28.12810 -27.51172 -26.26806 -24.82378 -23.90986 -23.54175 -22.92739 -21.91153 -20.55130 -20.06052 -19.46150 -18.43135 -17.82144 -17.46069 -17.11293 -16.89082 -16.69316 -16.59885 -16.31930 -15.99100 -15.63864 -15.39209 -15.13161 -14.98940 -14.83353 -14.60304 -14.47678 -14.09698 -13.86163 -13.75149 -13.41184 -13.28968 -13.14336 -12.91732 -12.88240 -12.68674 -12.53968 -12.49738 -12.24253 -12.20252 -12.11090 -12.08747 -11.93324 -11.67891 -11.64044 -11.49725 -11.43642 -11.01030 -10.95821 -10.74964 -10.67198 -9.73610 -9.26853 -8.00443 -5.33587 1.38109 1.42605 1.49876 1.53448 1.75566 2.50249 2.62146 2.92802 3.29218 3.33406 3.59825 3.63263 3.65684 3.78564 3.82748 3.98460 3.98728 4.02606 4.09809 4.16682 4.25878 4.28325 4.31803 4.32973 4.40069 4.45743 4.49573 4.54227 4.63128 4.70680 4.73735 4.77496 4.81227 4.83257 4.85638 4.89794 4.95777 4.97231 5.01410 5.04503 5.08594 5.11138 5.15773 5.27113 5.30964 5.42971 5.78195 5.89125 6.13011 6.22997 6.49957 7.04233 7.10593 7.86025 8.06637 9.21188 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026961 B = 0.001643 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.296208 B =17033.047138 C =17501.223089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C 0.171 3.829 4 N -0.750 5.750 5 C -0.233 4.233 6 H 0.055 0.945 7 C -0.063 4.063 8 N -0.985 5.985 9 Si 0.952 3.048 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.244 1.244 13 C -0.124 4.124 14 C 0.104 3.896 15 N -0.615 5.615 16 C 0.535 3.465 17 O -0.586 6.586 18 C -0.125 4.125 19 C 0.082 3.918 20 O -0.398 6.398 21 C 0.064 3.936 22 C 0.072 3.928 23 H 0.077 0.923 24 C -0.146 4.146 25 C -0.151 4.151 26 C 0.033 3.967 27 O -0.397 6.397 28 C 0.120 3.880 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.021 0.979 33 H 0.031 0.969 34 H 0.368 0.632 35 H 0.257 0.743 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.098 0.902 51 H 0.066 0.934 52 H 0.074 0.926 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.594 -37.996 7.948 38.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.079 4.079 3 C 0.045 3.955 4 N -0.396 5.396 5 C -0.364 4.364 6 H 0.073 0.927 7 C -0.255 4.255 8 N -0.636 5.636 9 Si 0.778 3.222 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.168 1.168 13 C -0.162 4.162 14 C -0.018 4.018 15 N -0.348 5.348 16 C 0.326 3.674 17 O -0.467 6.467 18 C -0.165 4.165 19 C 0.005 3.995 20 O -0.318 6.318 21 C -0.012 4.012 22 C 0.014 3.986 23 H 0.095 0.905 24 C -0.184 4.184 25 C -0.189 4.189 26 C -0.043 4.043 27 O -0.317 6.317 28 C -0.003 4.003 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.202 0.798 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.118 0.882 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.100 0.900 47 H 0.116 0.884 48 H 0.098 0.902 49 H 0.113 0.887 50 H 0.116 0.884 51 H 0.085 0.915 52 H 0.092 0.908 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.420 -37.740 8.469 38.829 hybrid contribution -0.606 0.553 -0.520 0.972 sum -4.026 -37.186 7.949 38.239 Atomic orbital electron populations 1.21668 0.93505 1.01395 1.01741 1.21683 0.96411 0.93946 0.95818 1.20664 0.96642 0.89980 0.88238 1.42590 1.63389 1.10741 1.22883 1.19030 1.25485 0.88406 1.03484 0.92731 1.25491 1.02673 0.96734 1.00577 1.69890 1.52327 1.12501 1.28868 0.85460 0.78784 0.79649 0.78257 1.20736 1.22378 1.16788 1.22593 1.02394 0.94196 0.97048 1.22324 1.01837 0.97986 0.79624 1.48806 1.66148 1.06974 1.12858 1.20450 0.75469 0.86046 0.85439 1.90699 1.51280 1.86452 1.18292 1.21389 1.06399 0.88704 0.99964 1.22040 1.00722 0.81926 0.94809 1.87820 1.89686 1.15979 1.38321 1.22728 1.00312 0.85908 0.92280 1.23134 0.84143 0.93105 0.98207 0.90537 1.22944 1.01324 0.93600 1.00492 1.22944 0.98083 0.98263 0.99609 1.23619 1.01419 0.80546 0.98750 1.89202 1.27741 1.23462 1.91252 1.22307 1.01499 0.79825 0.96643 0.91907 0.93031 0.93077 0.96075 0.95110 0.79821 0.93423 0.90323 0.90152 0.89365 0.88181 0.86521 0.86234 0.92704 0.93355 0.92680 0.89999 0.89973 0.88361 0.90160 0.88666 0.88423 0.91549 0.90792 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.28 71.98 0.60 -2.85 16 2 C -0.08 -2.11 0.64 -51.08 -0.03 -2.14 16 3 C 0.17 6.19 5.10 86.38 0.44 6.63 16 4 N -0.75 -33.48 4.96 -343.46 -1.70 -35.18 16 5 C -0.23 -13.11 10.47 84.03 0.88 -12.23 16 6 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 7 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 8 N -0.99 -62.94 13.97 21.65 0.30 -62.64 16 9 Si 0.95 44.31 27.74 68.60 1.90 46.21 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.24 -9.88 6.52 99.48 0.65 -9.23 16 13 C -0.12 -2.85 5.52 31.49 0.17 -2.68 16 14 C 0.10 1.78 6.76 86.53 0.58 2.36 16 15 N -0.62 -13.51 3.21 -810.06 -2.60 -16.11 16 16 C 0.54 12.63 7.89 87.66 0.69 13.33 16 17 O -0.59 -18.42 16.19 -3.03 -0.05 -18.47 16 18 C -0.13 -2.13 5.15 29.85 0.15 -1.97 16 19 C 0.08 1.57 5.23 71.98 0.38 1.94 16 20 O -0.40 -7.86 10.34 -148.94 -1.54 -9.40 16 21 C 0.06 0.97 5.54 71.98 0.40 1.37 16 22 C 0.07 0.98 3.57 31.10 0.11 1.10 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 C -0.15 -1.14 6.63 31.61 0.21 -0.93 16 25 C -0.15 -1.02 7.09 31.61 0.22 -0.80 16 26 C 0.03 0.36 7.63 72.48 0.55 0.91 16 27 O -0.40 -7.33 11.35 -148.94 -1.69 -9.02 16 28 C 0.12 3.03 5.97 86.61 0.52 3.55 16 29 H 0.06 1.52 8.08 -2.39 -0.02 1.50 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.50 7.11 -2.39 -0.02 1.49 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.03 1.12 8.13 -2.39 -0.02 1.10 16 34 H 0.37 15.46 4.24 -92.70 -0.39 15.07 16 35 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 36 H 0.08 1.98 7.85 -2.39 -0.02 1.96 16 37 H 0.08 1.80 7.87 -2.39 -0.02 1.78 16 38 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.10 1.24 7.54 -2.38 -0.02 1.22 16 40 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.12 1.63 7.91 -2.39 -0.02 1.61 16 42 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 43 H 0.05 1.00 8.10 -2.39 -0.02 0.99 16 44 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 46 H 0.08 0.59 7.87 -2.38 -0.02 0.57 16 47 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 52 H 0.07 2.04 7.75 -2.39 -0.02 2.03 16 53 H 0.08 1.97 8.04 -2.39 -0.02 1.95 16 Total: -1.00 -75.39 418.11 1.39 -74.01 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.42 Total: 26.25 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 6.34 Total: 4.36 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -4.00 Total: -113.92 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -3.28 Total: -36.90 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.90 Total: 46.21 kcal Total: -75.39 1.39 -74.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324753985.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.775 kcal (2) G-P(sol) polarization free energy of solvation -75.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds