Wall clock time and date at job start Sat Apr 11 2020 06:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46917 * 270.00255 * 3 2 1 5 5 H 1.48503 * 109.47350 * 29.99577 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00176 * 3 2 1 7 7 C 1.38811 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00076 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00068 * 173.83897 * 9 7 2 11 11 C 1.53003 * 109.54313 * 62.28955 * 10 9 7 12 12 N 1.46504 * 109.46893 * 54.84749 * 11 10 9 13 13 C 1.34773 * 119.99637 * 176.62220 * 12 11 10 14 14 O 1.21281 * 120.00298 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99875 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.47278 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47176 * 180.02562 * 16 15 13 18 18 H 1.08996 * 109.47922 * 305.02202 * 17 16 15 19 19 C 1.53094 * 109.47698 * 184.99569 * 17 16 15 20 20 C 1.53177 * 109.15912 * 182.40624 * 19 17 16 21 21 C 1.53183 * 109.03569 * 56.98594 * 20 19 17 22 22 C 1.53095 * 109.16059 * 303.01401 * 21 20 19 23 23 O 1.42898 * 109.41356 * 57.61021 * 22 21 20 24 24 C 1.53176 * 109.54454 * 302.01948 * 10 9 7 25 25 C 1.53084 * 109.16588 * 297.11445 * 24 10 9 26 26 O 1.42902 * 109.41312 * 302.39064 * 25 24 10 27 27 C 1.42897 * 114.10156 * 61.15951 * 26 25 24 28 28 C 1.53096 * 109.41261 * 298.84198 * 27 26 25 29 29 H 0.97001 * 120.00081 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99660 * 354.12030 * 9 7 2 31 31 H 1.08995 * 109.47486 * 174.84948 * 11 10 9 32 32 H 1.09000 * 109.46638 * 294.85264 * 11 10 9 33 33 H 0.96992 * 120.00139 * 356.62251 * 12 11 10 34 34 H 1.08999 * 109.47551 * 300.00046 * 15 13 12 35 35 H 1.09000 * 109.47395 * 60.00337 * 15 13 12 36 36 H 1.09008 * 109.46902 * 299.99551 * 16 15 13 37 37 H 1.09000 * 109.47330 * 59.99486 * 16 15 13 38 38 H 1.08998 * 109.52439 * 302.31023 * 19 17 16 39 39 H 1.08996 * 109.51920 * 62.44155 * 19 17 16 40 40 H 1.09006 * 109.54278 * 176.84579 * 20 19 17 41 41 H 1.08998 * 109.54639 * 297.02356 * 20 19 17 42 42 H 1.08995 * 109.52279 * 62.92121 * 21 20 19 43 43 H 1.09000 * 109.52023 * 183.05155 * 21 20 19 44 44 H 1.08995 * 109.47773 * 177.59279 * 22 21 20 45 45 H 1.08997 * 109.48093 * 297.61952 * 22 21 20 46 46 H 1.09005 * 109.52043 * 57.01965 * 24 10 9 47 47 H 1.09002 * 109.51838 * 177.20444 * 24 10 9 48 48 H 1.08998 * 109.48270 * 182.40726 * 25 24 10 49 49 H 1.09001 * 109.48023 * 62.37258 * 25 24 10 50 50 H 1.08992 * 109.48500 * 178.85488 * 27 26 25 51 51 H 1.09006 * 109.48322 * 58.82125 * 27 26 25 52 52 H 1.08996 * 109.51857 * 297.69896 * 28 27 26 53 53 H 1.09003 * 109.52217 * 177.51218 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0518 -3.6531 -0.1351 11 6 3.0027 -3.8271 1.0509 12 7 2.2484 -3.7154 2.3019 13 6 2.8703 -3.9038 3.4827 14 8 4.0542 -4.1653 3.5097 15 6 2.0944 -3.7895 4.7696 16 6 3.0292 -4.0462 5.9533 17 6 2.2413 -3.9308 7.2598 18 1 1.7445 -2.9614 7.3002 19 6 3.1988 -4.0638 8.4468 20 6 2.3953 -4.0075 9.7497 21 6 1.3353 -5.1132 9.7311 22 6 0.4498 -4.9397 8.4944 23 8 1.2629 -4.9707 7.3198 24 6 2.8535 -3.6465 -1.4403 25 6 1.8867 -3.5501 -2.6233 26 8 0.9677 -4.6434 -2.5761 27 6 0.1574 -4.6740 -1.3995 28 6 1.0547 -4.8155 -0.1671 29 1 -0.4850 0.8400 0.0004 30 1 0.3594 -2.3902 0.0862 31 1 3.4745 -4.8082 0.9975 32 1 3.7693 -3.0529 1.0185 33 1 1.3017 -3.5059 2.2804 34 1 1.6717 -2.7881 4.8514 35 1 1.2899 -4.5250 4.7754 36 1 3.4521 -5.0476 5.8718 37 1 3.8334 -3.3105 5.9473 38 1 3.7259 -5.0158 8.3848 39 1 3.9196 -3.2464 8.4267 40 1 3.0640 -4.1577 10.5973 41 1 1.9091 -3.0358 9.8366 42 1 1.8248 -6.0864 9.6950 43 1 0.7234 -5.0464 10.6307 44 1 -0.2795 -5.7487 8.4532 45 1 -0.0707 -3.9837 8.5513 46 1 3.5271 -2.7895 -1.4496 47 1 3.4323 -4.5669 -1.5168 48 1 2.4491 -3.5880 -3.5563 49 1 1.3370 -2.6105 -2.5680 50 1 -0.5261 -5.5215 -1.4507 51 1 -0.4150 -3.7491 -1.3280 52 1 1.5972 -5.7595 -0.2181 53 1 0.4418 -4.7947 0.7340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325029566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:25 Heat of formation + Delta-G solvation = -162.455007 kcal Electronic energy + Delta-G solvation = -31093.985140 eV Core-core repulsion = 26963.978304 eV Total energy + Delta-G solvation = -4130.006836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13822 -40.49181 -39.94886 -37.31241 -35.09959 -34.87847 -34.51541 -33.82051 -31.97985 -31.16703 -30.92037 -28.41675 -26.48489 -25.90493 -24.81428 -24.38613 -23.46080 -22.41738 -21.29487 -20.97751 -20.10005 -19.10137 -18.10282 -17.50187 -17.16562 -17.03007 -16.80099 -16.68811 -16.36417 -16.15541 -15.84820 -15.55126 -15.43126 -15.39606 -15.24017 -14.59796 -14.49125 -14.26998 -14.14095 -13.69740 -13.58300 -13.43002 -13.17242 -13.00729 -12.91325 -12.85768 -12.77270 -12.66712 -12.23293 -12.15277 -12.10018 -12.08145 -11.83587 -11.75365 -11.56790 -11.41017 -11.17894 -11.13329 -11.01445 -10.77941 -10.33712 -10.29699 -9.87963 -8.97283 -7.90797 -5.17256 1.45000 1.48337 1.53363 1.75581 2.39311 2.57207 2.86912 3.07610 3.42020 3.68984 3.76120 3.81526 3.88726 3.95409 3.97935 4.01405 4.07978 4.15992 4.16096 4.24253 4.33806 4.37450 4.47720 4.49605 4.59324 4.63351 4.69685 4.76853 4.77787 4.81639 4.83526 4.89610 4.89631 4.95248 5.01052 5.04338 5.09698 5.10304 5.14862 5.20099 5.22468 5.27880 5.29004 5.34707 5.41591 5.59825 5.65665 6.30981 6.35780 6.36854 6.71142 7.36656 7.40494 8.08852 8.36556 9.31218 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011325 B = 0.002783 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.820022 B =10058.919742 C =11335.276392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.059 4.059 3 Si 0.949 3.051 4 H -0.292 1.292 5 H -0.299 1.299 6 H -0.281 1.281 7 C -0.213 4.213 8 H 0.064 0.936 9 N -0.712 5.712 10 C 0.187 3.813 11 C 0.126 3.874 12 N -0.700 5.700 13 C 0.504 3.496 14 O -0.595 6.595 15 C -0.128 4.128 16 C -0.088 4.088 17 C 0.093 3.907 18 H 0.065 0.935 19 C -0.150 4.150 20 C -0.122 4.122 21 C -0.154 4.154 22 C 0.053 3.947 23 O -0.397 6.397 24 C -0.150 4.150 25 C 0.076 3.924 26 O -0.398 6.398 27 C 0.064 3.936 28 C -0.142 4.142 29 H 0.248 0.752 30 H 0.378 0.622 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.407 0.593 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.035 0.965 50 H 0.112 0.888 51 H 0.037 0.963 52 H 0.086 0.914 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -11.491 14.481 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.252 4.252 3 Si 0.781 3.219 4 H -0.220 1.220 5 H -0.226 1.226 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.082 0.918 9 N -0.353 5.353 10 C 0.096 3.904 11 C -0.001 4.001 12 N -0.350 5.350 13 C 0.292 3.708 14 O -0.477 6.477 15 C -0.168 4.168 16 C -0.126 4.126 17 C 0.035 3.965 18 H 0.083 0.917 19 C -0.188 4.188 20 C -0.160 4.160 21 C -0.192 4.192 22 C -0.024 4.024 23 O -0.317 6.317 24 C -0.190 4.190 25 C -0.001 4.001 26 O -0.317 6.317 27 C -0.012 4.012 28 C -0.180 4.180 29 H 0.057 0.943 30 H 0.211 0.789 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.243 0.757 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.107 0.893 44 H 0.120 0.880 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.116 0.884 49 H 0.054 0.946 50 H 0.130 0.870 51 H 0.056 0.944 52 H 0.105 0.895 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.962 -11.814 14.179 18.481 hybrid contribution -0.076 1.945 0.205 1.957 sum 0.886 -9.869 14.384 17.467 Atomic orbital electron populations 1.69748 1.05872 1.25522 1.59765 1.25187 0.95980 0.99720 1.04338 0.85511 0.77755 0.81610 0.77067 1.21998 1.22599 1.20670 1.19182 0.90757 0.84757 1.39843 0.91815 1.42489 1.05830 0.99980 1.86960 1.20013 0.91805 0.86752 0.91806 1.21614 0.94513 0.99415 0.84528 1.45801 1.13900 1.70025 1.05269 1.21250 0.87588 0.75487 0.86429 1.90624 1.17616 1.51129 1.88346 1.21592 0.99564 1.05170 0.90464 1.21270 0.96984 1.02899 0.91427 1.22116 0.89215 0.90814 0.94323 0.91741 1.22191 0.98608 1.03050 0.94975 1.21610 0.97953 0.99258 0.97163 1.22179 0.98450 0.99450 0.99074 1.22746 0.92774 1.02488 0.84365 1.87915 1.49046 1.52296 1.42423 1.22423 0.98719 1.01897 0.95994 1.22358 0.90608 0.88915 0.98210 1.87793 1.52807 1.49256 1.41834 1.22583 0.92557 1.01848 0.84225 1.22300 0.98440 0.97969 0.99315 0.94295 0.78859 0.91937 0.94807 0.75683 0.88191 0.87191 0.91887 0.90602 0.91709 0.90307 0.90554 0.91323 0.91680 0.89281 0.87951 0.92661 0.92100 0.90487 0.88350 0.94646 0.87022 0.94424 0.89517 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.81 13.07 21.65 0.28 -53.53 16 2 C -0.06 -3.14 5.50 84.86 0.47 -2.68 16 3 Si 0.95 44.65 29.55 68.60 2.03 46.68 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.21 -10.57 8.67 84.03 0.73 -9.84 16 8 H 0.06 3.22 6.79 -2.91 -0.02 3.20 16 9 N -0.71 -30.23 3.61 -302.80 -1.09 -31.33 16 10 C 0.19 6.45 0.41 3.72 0.00 6.45 16 11 C 0.13 4.47 4.38 86.38 0.38 4.84 16 12 N -0.70 -23.31 5.13 -463.06 -2.38 -25.69 16 13 C 0.50 16.98 7.83 87.66 0.69 17.66 16 14 O -0.60 -24.13 15.98 -3.03 -0.05 -24.18 16 15 C -0.13 -3.30 5.60 29.85 0.17 -3.14 16 16 C -0.09 -2.15 4.21 30.60 0.13 -2.02 16 17 C 0.09 1.87 2.64 30.63 0.08 1.95 16 18 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 19 C -0.15 -2.57 5.42 30.68 0.17 -2.41 16 20 C -0.12 -1.65 6.03 30.71 0.19 -1.46 16 21 C -0.15 -1.98 6.14 30.69 0.19 -1.79 16 22 C 0.05 0.81 6.84 72.01 0.49 1.30 16 23 O -0.40 -8.51 9.94 -148.98 -1.48 -10.00 16 24 C -0.15 -5.07 4.79 30.68 0.15 -4.92 16 25 C 0.08 2.59 6.68 72.01 0.48 3.07 16 26 O -0.40 -13.24 10.76 -148.98 -1.60 -14.84 16 27 C 0.06 1.92 6.67 72.01 0.48 2.40 16 28 C -0.14 -4.05 4.79 30.69 0.15 -3.91 16 29 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 30 H 0.38 17.28 6.81 -92.71 -0.63 16.65 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.03 1.40 7.47 -2.39 -0.02 1.38 16 33 H 0.41 12.93 7.42 -92.71 -0.69 12.24 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.11 2.55 7.82 -2.39 -0.02 2.54 16 36 H 0.06 1.71 8.10 -2.38 -0.02 1.69 16 37 H 0.08 1.95 8.10 -2.39 -0.02 1.93 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 46 H 0.06 2.24 7.20 -2.38 -0.02 2.23 16 47 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 49 H 0.04 1.45 7.75 -2.39 -0.02 1.43 16 50 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 51 H 0.04 1.30 7.14 -2.38 -0.02 1.28 16 52 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.08 2.15 7.37 -2.39 -0.02 2.13 16 Total: -1.00 -63.14 408.36 0.21 -62.93 By element: Atomic # 1 Polarization: 44.86 SS G_CDS: -0.43 Total: 44.44 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 4.93 Total: 5.52 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -3.19 Total: -110.54 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -3.13 Total: -49.02 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.14 0.21 -62.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325029566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.523 kcal (2) G-P(sol) polarization free energy of solvation -63.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds