Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00215 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99800 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.46496 * 120.00077 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.49451 * 299.93520 * 10 9 7 12 12 O 1.42900 * 109.47172 * 59.99870 * 11 10 9 13 13 C 1.53038 * 109.50056 * 179.83898 * 10 9 7 14 14 C 1.53046 * 109.53600 * 301.41217 * 13 10 9 15 15 C 1.53189 * 109.31138 * 298.63299 * 14 13 10 16 16 N 1.46931 * 108.77853 * 54.63468 * 15 14 13 17 17 C 1.34772 * 120.62925 * 126.36442 * 16 15 14 18 18 O 1.21286 * 119.99521 * 180.02562 * 17 16 15 19 19 C 1.50699 * 120.00131 * 0.03022 * 17 16 15 20 20 O 1.42903 * 109.46738 * 179.97438 * 19 17 16 21 21 C 1.42912 * 113.99714 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.47021 * 179.97438 * 21 20 19 23 23 C 1.54268 * 110.03284 * 292.16639 * 22 21 20 24 24 C 1.54890 * 104.19725 * 217.10451 * 23 22 21 25 25 C 1.54891 * 102.74427 * 37.94473 * 24 23 22 26 26 C 1.53874 * 110.03109 * 175.00128 * 22 21 20 27 27 C 1.46927 * 118.73570 * 306.39470 * 16 15 14 28 28 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 29 29 H 0.97004 * 119.99914 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46621 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.46788 * 299.99844 * 11 10 9 32 32 H 0.96695 * 113.99906 * 179.97438 * 12 11 10 33 33 H 1.08993 * 109.46110 * 61.43029 * 13 10 9 34 34 H 1.08996 * 109.46103 * 181.39114 * 13 10 9 35 35 H 1.08998 * 109.49732 * 178.68139 * 14 13 10 36 36 H 1.08999 * 109.49641 * 58.58569 * 14 13 10 37 37 H 1.09000 * 109.58896 * 294.84733 * 15 14 13 38 38 H 1.09000 * 109.70917 * 174.49324 * 15 14 13 39 39 H 1.08994 * 109.46982 * 299.99314 * 19 17 16 40 40 H 1.08996 * 109.47100 * 59.99918 * 19 17 16 41 41 H 1.08999 * 109.46973 * 300.00031 * 21 20 19 42 42 H 1.08998 * 109.46806 * 59.99853 * 21 20 19 43 43 H 1.08995 * 110.01750 * 53.60714 * 22 21 20 44 44 H 1.08995 * 110.48643 * 335.78844 * 23 22 21 45 45 H 1.09006 * 110.48887 * 98.42870 * 23 22 21 46 46 H 1.08994 * 110.75752 * 279.63147 * 24 23 22 47 47 H 1.08996 * 110.75597 * 156.25571 * 24 23 22 48 48 H 1.08999 * 110.48192 * 203.37767 * 25 24 23 49 49 H 1.08994 * 110.59761 * 80.79066 * 25 24 23 50 50 H 1.08997 * 110.03026 * 238.56763 * 26 22 21 51 51 H 1.09000 * 110.03130 * 359.95040 * 26 22 21 52 52 H 1.08999 * 109.58456 * 293.81520 * 27 16 15 53 53 H 1.08999 * 109.58502 * 173.39294 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 2.0579 -3.6568 0.0047 11 6 2.9317 -3.7420 -1.2484 12 8 3.8606 -2.6560 -1.2561 13 6 1.0640 -4.8205 0.0152 14 6 0.1677 -4.7169 1.2514 15 6 1.0321 -4.8080 2.5129 16 7 2.0825 -3.7831 2.4415 17 6 2.2523 -2.9027 3.4477 18 8 3.1228 -2.0611 3.3766 19 6 1.3608 -2.9641 4.6612 20 8 1.7357 -1.9359 5.5800 21 6 0.9475 -1.9058 6.7718 22 6 1.4351 -0.7729 7.6772 23 6 2.8463 -1.0936 8.2115 24 6 2.8346 -0.5534 9.6632 25 6 1.4031 -0.8977 10.1444 26 6 0.5175 -0.6483 8.9061 27 6 2.9437 -3.7359 1.2520 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0092 30 1 3.4761 -4.6863 -1.2481 31 1 2.3009 -3.6868 -2.1356 32 1 4.4486 -2.6469 -2.0237 33 1 0.4488 -4.7806 -0.8837 34 1 1.6095 -5.7638 0.0401 35 1 -0.5552 -5.5326 1.2460 36 1 -0.3594 -3.7629 1.2397 37 1 1.4889 -5.7959 2.5723 38 1 0.4145 -4.6375 3.3947 39 1 0.3239 -2.8203 4.3578 40 1 1.4674 -3.9367 5.1415 41 1 -0.0979 -1.7394 6.5119 42 1 1.0448 -2.8566 7.2958 43 1 1.4489 0.1666 7.1247 44 1 3.0208 -2.1695 8.2062 45 1 3.6042 -0.5803 7.6196 46 1 2.9976 0.5242 9.6757 47 1 3.5802 -1.0651 10.2717 48 1 1.1078 -0.2414 10.9630 49 1 1.3429 -1.9414 10.4526 50 1 0.0867 0.3519 8.9505 51 1 -0.2756 -1.3944 8.8570 52 1 3.5564 -4.6364 1.2086 53 1 3.5859 -2.8565 1.3006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327569721.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -147.699666 kcal Electronic energy + Delta-G solvation = -31879.675675 eV Core-core repulsion = 27750.308678 eV Total energy + Delta-G solvation = -4129.366997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.28925 -39.88065 -39.15516 -37.74655 -37.11400 -35.56984 -33.96652 -32.53293 -31.60283 -30.54228 -29.62130 -29.05868 -26.58222 -26.04844 -25.52109 -25.06716 -22.93559 -21.56144 -21.04607 -20.50462 -19.69456 -19.16063 -18.39105 -17.81388 -17.61193 -17.28587 -16.94040 -16.60276 -16.24539 -16.02203 -15.78039 -15.60453 -15.58531 -15.04772 -14.81520 -14.50627 -14.33289 -14.19591 -14.12233 -13.69657 -13.51749 -13.30631 -13.21340 -12.90334 -12.77500 -12.74958 -12.54746 -12.17737 -12.10824 -11.99254 -11.92584 -11.91190 -11.76011 -11.70568 -11.51109 -11.39584 -11.35258 -11.28762 -10.90585 -10.65308 -10.57254 -10.55785 -9.49710 -8.79912 -7.82785 -5.02644 1.36555 1.42503 1.48161 1.69149 1.94927 2.62838 2.90096 3.39918 3.61716 3.67563 3.68419 3.71906 3.87833 3.89385 3.97954 4.08562 4.14551 4.21429 4.23777 4.33076 4.37172 4.38376 4.46705 4.54630 4.54943 4.62199 4.65451 4.67053 4.73061 4.79997 4.83282 4.84823 4.89978 4.95054 5.04255 5.04949 5.07380 5.08220 5.21263 5.23334 5.33432 5.43541 5.46293 5.47454 5.54918 5.73476 5.90711 6.15509 6.43515 6.60321 7.16392 7.37661 7.52151 8.21830 8.44315 9.41366 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003399 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.399349 B = 8236.406340 C = 9537.090489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.087 4.087 3 Si 0.942 3.058 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.307 1.307 7 C -0.167 4.167 8 H 0.077 0.923 9 N -0.709 5.709 10 C 0.173 3.827 11 C 0.075 3.925 12 O -0.575 6.575 13 C -0.109 4.109 14 C -0.129 4.129 15 C 0.103 3.897 16 N -0.594 5.594 17 C 0.501 3.499 18 O -0.581 6.581 19 C 0.057 3.943 20 O -0.400 6.400 21 C 0.064 3.936 22 C -0.098 4.098 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.113 4.113 27 C 0.117 3.883 28 H 0.240 0.760 29 H 0.372 0.628 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.375 0.625 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.038 0.962 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.040 0.960 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.068 0.932 51 H 0.080 0.920 52 H 0.080 0.920 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.731 -17.059 14.237 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.277 4.277 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.236 1.236 7 C -0.300 4.300 8 H 0.095 0.905 9 N -0.348 5.348 10 C 0.082 3.918 11 C -0.005 4.005 12 O -0.381 6.381 13 C -0.147 4.147 14 C -0.167 4.167 15 C -0.019 4.019 16 N -0.327 5.327 17 C 0.289 3.711 18 O -0.461 6.461 19 C -0.023 4.023 20 O -0.319 6.319 21 C -0.012 4.012 22 C -0.117 4.117 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.155 4.155 26 C -0.150 4.150 27 C -0.007 4.007 28 H 0.049 0.951 29 H 0.205 0.795 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.222 0.778 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.057 0.943 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.134 0.866 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.087 0.913 51 H 0.099 0.901 52 H 0.098 0.902 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.299 -16.231 14.721 21.915 hybrid contribution 0.308 1.634 -1.086 1.986 sum 0.010 -14.597 13.635 19.975 Atomic orbital electron populations 1.69742 1.05578 1.24571 1.63164 1.25128 0.96073 0.99586 1.06885 0.85631 0.77442 0.82190 0.77152 1.20534 1.22288 1.23568 1.19554 0.91430 0.84644 1.34381 0.90528 1.42514 1.04815 1.00281 1.87224 1.20467 0.92014 0.87340 0.91961 1.22742 0.91044 0.88810 0.97916 1.86806 1.51330 1.50934 1.49030 1.21637 0.97139 0.96988 0.98934 1.21858 0.98233 1.02601 0.94057 1.22098 0.88787 0.91513 0.99474 1.47895 1.34995 1.32351 1.17473 1.20892 0.84601 0.80392 0.85207 1.90682 1.37122 1.37391 1.80870 1.22267 0.97495 0.93622 0.88884 1.88023 1.59188 1.53969 1.30756 1.22932 0.94167 0.99532 0.84534 1.21821 0.96603 0.97377 0.95905 1.22350 0.95542 1.01032 0.96452 1.22532 0.98026 1.00765 0.94906 1.22350 0.93846 1.02349 0.96974 1.22120 0.97728 1.02616 0.92571 1.21902 0.92891 1.00884 0.85065 0.95131 0.79529 0.91407 0.94584 0.77754 0.91454 0.87815 0.87072 0.94292 0.87746 0.88507 0.89621 0.86626 0.92562 0.90631 0.93008 0.91279 0.94075 0.91933 0.90475 0.90395 0.90447 0.91347 0.90100 0.90242 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.26 13.06 21.65 0.28 -62.98 16 2 C -0.09 -5.47 5.50 84.86 0.47 -5.01 16 3 Si 0.94 53.42 29.55 68.60 2.03 55.45 16 4 H -0.28 -15.04 7.11 99.48 0.71 -14.33 16 5 H -0.30 -16.59 7.11 99.48 0.71 -15.88 16 6 H -0.31 -18.25 7.11 99.48 0.71 -17.55 16 7 C -0.17 -9.89 8.21 84.03 0.69 -9.20 16 8 H 0.08 4.74 5.28 -2.91 -0.02 4.73 16 9 N -0.71 -35.17 4.75 -303.00 -1.44 -36.61 16 10 C 0.17 6.32 0.68 3.68 0.00 6.32 16 11 C 0.07 2.47 6.08 71.98 0.44 2.91 16 12 O -0.58 -22.33 10.11 -148.98 -1.51 -23.84 16 13 C -0.11 -2.78 4.76 30.62 0.15 -2.63 16 14 C -0.13 -3.07 5.91 30.67 0.18 -2.89 16 15 C 0.10 2.25 6.34 86.36 0.55 2.80 16 16 N -0.59 -20.54 2.89 -818.91 -2.37 -22.91 16 17 C 0.50 20.84 7.78 87.66 0.68 21.53 16 18 O -0.58 -31.84 15.91 15.99 0.25 -31.59 16 19 C 0.06 1.75 4.76 71.24 0.34 2.09 16 20 O -0.40 -14.39 9.73 -129.94 -1.26 -15.65 16 21 C 0.06 1.60 4.99 71.98 0.36 1.96 16 22 C -0.10 -2.43 3.19 -10.07 -0.03 -2.46 16 23 C -0.12 -2.80 6.22 31.67 0.20 -2.60 16 24 C -0.12 -2.24 6.91 31.89 0.22 -2.02 16 25 C -0.12 -1.71 6.83 31.67 0.22 -1.50 16 26 C -0.11 -1.96 6.46 31.32 0.20 -1.76 16 27 C 0.12 4.43 4.85 86.36 0.42 4.85 16 28 H 0.24 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.37 19.75 6.43 -92.71 -0.60 19.15 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.37 10.57 9.12 -74.06 -0.68 9.90 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.28 6.75 -2.39 -0.02 1.26 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 1.71 5.93 -2.39 -0.01 1.69 16 39 H 0.09 2.45 7.69 -2.39 -0.02 2.43 16 40 H 0.12 2.41 7.94 -2.39 -0.02 2.39 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.43 8.00 -2.39 -0.02 1.41 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.58 7.76 -2.39 -0.02 1.56 16 45 H 0.04 1.19 8.14 -2.38 -0.02 1.18 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.08 1.16 7.67 -2.39 -0.02 1.14 16 52 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 53 H 0.05 2.34 5.69 -2.39 -0.01 2.32 16 Total: -1.00 -90.22 405.49 0.70 -89.52 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.37 Total: 36.21 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 5.07 Total: 12.39 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -3.52 Total: -122.50 kcal Atomic # 8 Polarization: -68.56 SS G_CDS: -2.52 Total: -71.07 kcal Atomic # 14 Polarization: 53.42 SS G_CDS: 2.03 Total: 55.45 kcal Total: -90.22 0.70 -89.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327569721.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.177 kcal (2) G-P(sol) polarization free energy of solvation -90.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds