Wall clock time and date at job start Sat Apr 11 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 110.54104 * 2 1 4 4 C 1.54091 * 110.48931 * 122.62077 * 2 1 3 5 5 O 1.43753 * 107.29266 * 120.70358 * 4 2 1 6 6 C 1.44373 * 106.97619 * 333.48446 * 5 4 2 7 7 H 1.09002 * 110.62059 * 281.40619 * 6 5 4 8 8 C 1.53003 * 110.61846 * 158.56123 * 6 5 4 9 9 C 1.50698 * 109.46931 * 66.45487 * 8 6 5 10 10 O 1.21279 * 119.99808 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00023 * 180.02562 * 9 8 6 12 12 C 1.46933 * 120.62741 * 0.02562 * 11 9 8 13 13 C 1.53188 * 108.77495 * 233.58614 * 12 11 9 14 14 C 1.53034 * 109.31404 * 305.36890 * 13 12 11 15 15 C 1.53346 * 109.61010 * 61.37429 * 14 13 12 16 16 C 1.53001 * 109.68609 * 178.74640 * 15 14 13 17 17 O 1.42898 * 109.47082 * 299.75077 * 16 15 14 18 18 N 1.46500 * 109.47317 * 58.54920 * 15 14 13 19 19 C 1.36934 * 120.00132 * 60.37719 * 18 15 14 20 20 H 1.07998 * 120.00047 * 0.02562 * 19 18 15 21 21 C 1.38808 * 120.00197 * 180.02562 * 19 18 15 22 22 N 1.31623 * 120.00167 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00348 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47095 * 59.99776 * 23 21 19 25 25 H 1.48495 * 109.47577 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47199 * 300.00194 * 23 21 19 27 27 C 1.46919 * 120.63255 * 179.97438 * 11 9 8 28 28 C 1.54816 * 110.48142 * 237.38783 * 2 1 3 29 29 H 1.09007 * 109.46821 * 298.83294 * 1 2 3 30 30 H 1.09003 * 109.47548 * 58.83127 * 1 2 3 31 31 H 1.09003 * 109.47373 * 178.83791 * 1 2 3 32 32 H 1.08998 * 109.46968 * 181.16898 * 3 2 1 33 33 H 1.08997 * 109.46950 * 301.16918 * 3 2 1 34 34 H 1.08992 * 109.46853 * 61.16918 * 3 2 1 35 35 H 1.08998 * 109.88458 * 1.28133 * 4 2 1 36 36 H 1.09002 * 109.88125 * 240.12377 * 4 2 1 37 37 H 1.09001 * 109.46646 * 306.45447 * 8 6 5 38 38 H 1.09001 * 109.47188 * 186.45590 * 8 6 5 39 39 H 1.08994 * 109.58580 * 353.38021 * 12 11 9 40 40 H 1.09002 * 109.58042 * 113.80101 * 12 11 9 41 41 H 1.08994 * 109.49494 * 65.32533 * 13 12 11 42 42 H 1.09007 * 109.49349 * 185.38405 * 13 12 11 43 43 H 1.08999 * 109.45836 * 181.38851 * 14 13 12 44 44 H 1.09000 * 109.46169 * 301.34220 * 14 13 12 45 45 H 1.08994 * 109.47295 * 59.75431 * 16 15 14 46 46 H 1.09005 * 109.46904 * 179.75064 * 16 15 14 47 47 H 0.96704 * 113.99897 * 179.97438 * 17 16 15 48 48 H 0.97000 * 119.99716 * 240.37599 * 18 15 14 49 49 H 0.96998 * 120.00428 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.58751 * 246.20189 * 27 11 9 51 51 H 1.08996 * 109.58750 * 6.48373 * 27 11 9 52 52 H 1.09006 * 110.90447 * 144.00675 * 28 2 1 53 53 H 1.08998 * 110.90954 * 20.40412 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4328 0.0000 4 6 2.0693 -0.7781 1.2157 5 8 2.8754 -1.8556 0.7101 6 6 2.3780 -2.1716 -0.6079 7 1 1.4712 -2.7729 -0.5421 8 6 3.4463 -2.8986 -1.4270 9 6 3.7145 -4.2499 -0.8162 10 8 3.1102 -4.5974 0.1763 11 7 4.6258 -5.0722 -1.3727 12 6 5.3662 -4.6650 -2.5748 13 6 5.2020 -5.7482 -3.6455 14 6 5.6329 -7.0989 -3.0693 15 6 4.7381 -7.4589 -1.8771 16 6 5.1473 -8.8235 -1.3192 17 8 4.9978 -9.8176 -2.3347 18 7 3.3402 -7.5071 -2.3127 19 6 2.9561 -8.3914 -3.2851 20 1 3.6837 -9.0536 -3.7307 21 6 1.6317 -8.4368 -3.6981 22 7 0.7450 -7.6295 -3.1555 23 14 1.1077 -9.6436 -5.0242 24 1 1.3900 -11.0295 -4.5718 25 1 -0.3471 -9.4945 -5.2824 26 1 1.8634 -9.3667 -6.2722 27 6 4.8986 -6.3924 -0.7884 28 6 2.0717 -0.7816 -1.2216 29 1 -0.3633 0.4956 0.9003 30 1 -0.3634 0.5319 -0.8793 31 1 -0.3634 -1.0275 -0.0208 32 1 3.1564 1.4125 -0.0210 33 1 1.6962 1.9596 -0.8793 34 1 1.7302 1.9468 0.9002 35 1 1.2392 -1.1780 1.7980 36 1 2.6774 -0.1203 1.8368 37 1 4.3649 -2.3118 -1.4285 38 1 3.0950 -3.0260 -2.4510 39 1 4.9686 -3.7206 -2.9463 40 1 6.4223 -4.5489 -2.3314 41 1 4.1576 -5.8003 -3.9531 42 1 5.8234 -5.5049 -4.5074 43 1 5.5403 -7.8672 -3.8369 44 1 6.6699 -7.0387 -2.7393 45 1 6.1878 -8.7871 -0.9967 46 1 4.5121 -9.0738 -0.4694 47 1 5.2403 -10.7096 -2.0507 48 1 2.6866 -6.9127 -1.9121 49 1 -0.1805 -7.6615 -3.4438 50 1 5.9167 -6.4167 -0.3998 51 1 4.1941 -6.5866 0.0203 52 1 2.9796 -0.3185 -1.6082 53 1 1.3138 -0.8590 -2.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327578252.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:30 Heat of formation + Delta-G solvation = -145.692145 kcal Electronic energy + Delta-G solvation = -32223.352855 eV Core-core repulsion = 28094.072910 eV Total energy + Delta-G solvation = -4129.279944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.48858 -40.66901 -39.15878 -37.10500 -35.54212 -35.50842 -33.91904 -33.08177 -32.62006 -30.58088 -28.62399 -28.22673 -26.86175 -26.65416 -26.00110 -25.44453 -23.05467 -22.54562 -20.74604 -20.20254 -19.52836 -19.14214 -18.14452 -17.91355 -17.45677 -16.79370 -16.64688 -16.40680 -16.05494 -15.81145 -15.76296 -15.35963 -15.01975 -14.83812 -14.73078 -14.56741 -14.38570 -14.17448 -14.01641 -13.76706 -13.51298 -13.45222 -13.24690 -12.88185 -12.84078 -12.75662 -12.63791 -12.61171 -12.44888 -12.26264 -12.03845 -11.79949 -11.68123 -11.63476 -11.57454 -11.48283 -11.47148 -11.29316 -10.79478 -10.63292 -10.54793 -10.51013 -9.46718 -8.86160 -7.76897 -5.02348 1.46491 1.49496 1.55166 1.75688 2.12086 2.65509 2.93094 3.43838 3.45205 3.56279 3.69537 3.77472 3.87217 3.88119 4.00869 4.04720 4.17522 4.18748 4.29268 4.34360 4.39694 4.42729 4.49558 4.56256 4.57402 4.63768 4.67082 4.70181 4.76693 4.78951 4.80693 4.82606 4.88374 4.94618 5.02253 5.04289 5.05033 5.06890 5.13079 5.22251 5.30436 5.34905 5.45062 5.59544 5.65181 5.72760 5.92076 6.02124 6.44537 6.55458 7.13355 7.32616 7.51017 8.22885 8.46887 9.47168 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003283 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.424548 B = 8526.208784 C = 9626.108005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 C -0.130 4.130 4 C 0.046 3.954 5 O -0.388 6.388 6 C 0.091 3.909 7 H 0.038 0.962 8 C -0.124 4.124 9 C 0.507 3.493 10 O -0.584 6.584 11 N -0.602 5.602 12 C 0.111 3.889 13 C -0.126 4.126 14 C -0.109 4.109 15 C 0.177 3.823 16 C 0.076 3.924 17 O -0.565 6.565 18 N -0.715 5.715 19 C -0.180 4.180 20 H 0.094 0.906 21 C -0.095 4.095 22 N -0.982 5.982 23 Si 0.961 3.039 24 H -0.287 1.287 25 H -0.307 1.307 26 H -0.281 1.281 27 C 0.120 3.880 28 C -0.133 4.133 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.038 0.962 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.020 0.980 47 H 0.376 0.624 48 H 0.363 0.637 49 H 0.239 0.761 50 H 0.100 0.900 51 H 0.056 0.944 52 H 0.100 0.900 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.858 17.218 3.271 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.187 4.187 4 C -0.031 4.031 5 O -0.308 6.308 6 C 0.033 3.967 7 H 0.056 0.944 8 C -0.164 4.164 9 C 0.297 3.703 10 O -0.464 6.464 11 N -0.335 5.335 12 C -0.011 4.011 13 C -0.164 4.164 14 C -0.148 4.148 15 C 0.086 3.914 16 C -0.004 4.004 17 O -0.371 6.371 18 N -0.353 5.353 19 C -0.312 4.312 20 H 0.112 0.888 21 C -0.285 4.285 22 N -0.637 5.637 23 Si 0.793 3.207 24 H -0.214 1.214 25 H -0.234 1.234 26 H -0.208 1.208 27 C -0.004 4.004 28 C -0.171 4.171 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.038 0.962 47 H 0.223 0.777 48 H 0.195 0.805 49 H 0.048 0.952 50 H 0.118 0.882 51 H 0.075 0.925 52 H 0.118 0.882 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.551 17.321 3.420 21.098 hybrid contribution -1.433 -1.618 -0.049 2.162 sum 10.117 15.703 3.371 18.982 Atomic orbital electron populations 1.21889 0.93331 1.01376 1.03107 1.21942 0.96603 0.97267 0.93920 1.21795 1.01091 0.92838 1.02945 1.23477 0.94829 0.88365 0.96435 1.88926 1.56339 1.53526 1.32000 1.22784 0.95025 0.95984 0.82884 0.94358 1.21792 1.02054 0.92067 1.00448 1.21167 0.78054 0.87535 0.83587 1.90679 1.50336 1.77052 1.28317 1.48017 1.40255 1.15921 1.29277 1.22005 0.97359 0.98300 0.83389 1.21753 1.01503 0.94868 0.98274 1.21787 0.98138 0.96995 0.97910 1.20434 0.85677 0.91708 0.93617 1.22618 0.98457 0.89710 0.89660 1.86721 1.90889 1.20042 1.39446 1.42562 1.04232 1.43652 1.44879 1.19785 0.92469 1.09555 1.09413 0.88823 1.25420 0.96934 1.02499 1.03644 1.69866 1.01790 1.43714 1.48301 0.85359 0.75821 0.79387 0.80129 1.21355 1.23371 1.20761 1.21567 1.01742 0.82044 0.95014 1.23313 1.03071 0.92907 0.97775 0.91386 0.90884 0.94262 0.91967 0.91165 0.91609 0.93758 0.88606 0.85241 0.86240 0.88027 0.88396 0.94289 0.89221 0.93549 0.90306 0.91405 0.96190 0.77675 0.80529 0.95184 0.88165 0.92497 0.88157 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.26 71.98 0.59 -1.85 16 2 C -0.10 -1.75 0.99 -51.19 -0.05 -1.80 16 3 C -0.13 -1.63 8.27 71.98 0.60 -1.04 16 4 C 0.05 1.08 7.04 72.35 0.51 1.59 16 5 O -0.39 -12.26 10.62 -138.12 -1.47 -13.73 16 6 C 0.09 2.62 2.80 31.28 0.09 2.71 16 7 H 0.04 1.39 8.03 -2.39 -0.02 1.37 16 8 C -0.12 -3.31 3.82 29.85 0.11 -3.20 16 9 C 0.51 18.58 7.61 87.66 0.67 19.24 16 10 O -0.58 -27.42 14.97 7.84 0.12 -27.31 16 11 N -0.60 -19.49 2.87 -818.81 -2.35 -21.84 16 12 C 0.11 2.63 6.34 86.36 0.55 3.18 16 13 C -0.13 -3.74 5.93 30.67 0.18 -3.56 16 14 C -0.11 -3.54 4.41 30.72 0.14 -3.41 16 15 C 0.18 6.69 0.69 3.80 0.00 6.70 16 16 C 0.08 2.62 6.08 71.98 0.44 3.06 16 17 O -0.57 -20.74 9.99 -148.98 -1.49 -22.22 16 18 N -0.72 -36.23 4.23 -302.45 -1.28 -37.51 16 19 C -0.18 -10.03 8.29 84.03 0.70 -9.33 16 20 H 0.09 5.13 5.32 -2.91 -0.02 5.12 16 21 C -0.10 -5.70 5.50 84.86 0.47 -5.24 16 22 N -0.98 -63.56 13.06 21.65 0.28 -63.28 16 23 Si 0.96 48.99 29.55 68.60 2.03 51.02 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.31 -15.99 7.11 99.48 0.71 -15.29 16 26 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 27 C 0.12 4.14 5.14 86.38 0.44 4.58 16 28 C -0.13 -2.58 5.70 31.90 0.18 -2.40 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.04 1.12 7.69 -2.39 -0.02 1.10 16 36 H 0.10 1.88 7.69 -2.39 -0.02 1.86 16 37 H 0.13 2.53 7.94 -2.39 -0.02 2.51 16 38 H 0.12 2.87 7.69 -2.39 -0.02 2.86 16 39 H 0.10 1.92 5.93 -2.39 -0.01 1.91 16 40 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.56 7.54 -2.39 -0.02 1.54 16 42 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.05 1.77 6.87 -2.39 -0.02 1.76 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.38 9.96 9.12 -74.05 -0.68 9.29 16 48 H 0.36 21.22 7.65 -92.71 -0.71 20.51 16 49 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 50 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 51 H 0.06 2.38 7.00 -2.39 -0.02 2.36 16 52 H 0.10 1.52 7.78 -2.38 -0.02 1.50 16 53 H 0.09 1.61 7.86 -2.39 -0.02 1.60 16 Total: -1.00 -82.70 403.59 0.98 -81.72 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -0.48 Total: 43.94 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.61 Total: 9.22 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -3.34 Total: -122.63 kcal Atomic # 8 Polarization: -60.42 SS G_CDS: -2.84 Total: -63.26 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -82.70 0.98 -81.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327578252.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.974 kcal (2) G-P(sol) polarization free energy of solvation -82.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds