Wall clock time and date at job start Sat Apr 11 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00406 * 2 1 4 4 H 1.48500 * 109.47153 * 272.90502 * 3 2 1 5 5 H 1.48507 * 109.46865 * 32.90130 * 3 2 1 6 6 H 1.48498 * 109.47213 * 152.90164 * 3 2 1 7 7 C 1.38818 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99569 * 3.63438 * 7 2 1 9 9 N 1.36931 * 120.00343 * 183.63993 * 7 2 1 10 10 C 1.46501 * 120.00308 * 174.21916 * 9 7 2 11 11 C 1.53001 * 109.47173 * 185.19306 * 10 9 7 12 12 N 1.46501 * 109.61882 * 305.23534 * 11 10 9 13 13 C 1.34777 * 119.99773 * 298.74382 * 12 11 10 14 14 O 1.21284 * 120.00214 * 5.18265 * 13 12 11 15 15 C 1.50697 * 120.00355 * 185.18672 * 13 12 11 16 16 C 1.52990 * 109.47638 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47425 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47478 * 55.00300 * 17 16 15 19 19 C 1.53087 * 109.47961 * 175.02242 * 17 16 15 20 20 C 1.53188 * 109.16122 * 177.58078 * 19 17 16 21 21 C 1.53176 * 109.04548 * 303.03912 * 20 19 17 22 22 C 1.53092 * 109.16090 * 56.97084 * 21 20 19 23 23 O 1.42895 * 109.47933 * 294.97876 * 17 16 15 24 24 C 1.53178 * 109.54039 * 65.45705 * 11 10 9 25 25 C 1.53096 * 109.16245 * 176.84460 * 24 11 10 26 26 O 1.42907 * 109.41159 * 302.39344 * 25 24 11 27 27 C 1.42900 * 114.10157 * 61.15794 * 26 25 24 28 28 C 1.53088 * 109.41143 * 298.83965 * 27 26 25 29 29 H 0.97004 * 119.99987 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99895 * 354.22050 * 9 7 2 31 31 H 1.09007 * 109.46964 * 65.19782 * 10 9 7 32 32 H 1.08998 * 109.47338 * 305.19708 * 10 9 7 33 33 H 0.96991 * 120.00059 * 118.74547 * 12 11 10 34 34 H 1.09004 * 109.47120 * 300.00346 * 15 13 12 35 35 H 1.09002 * 109.47053 * 59.99587 * 15 13 12 36 36 H 1.08996 * 109.47452 * 300.00094 * 16 15 13 37 37 H 1.09002 * 109.47113 * 59.99774 * 16 15 13 38 38 H 1.09000 * 109.52517 * 297.49552 * 19 17 16 39 39 H 1.09000 * 109.52313 * 57.68912 * 19 17 16 40 40 H 1.09003 * 109.54282 * 183.16562 * 20 19 17 41 41 H 1.08998 * 109.60288 * 62.94648 * 20 19 17 42 42 H 1.08998 * 109.52013 * 297.07223 * 21 20 19 43 43 H 1.08992 * 109.57514 * 176.90735 * 21 20 19 44 44 H 1.09008 * 109.47503 * 182.40752 * 22 21 20 45 45 H 1.08995 * 109.48054 * 62.37838 * 22 21 20 46 46 H 1.09001 * 109.52105 * 56.93986 * 24 11 10 47 47 H 1.09000 * 109.52317 * 296.74859 * 24 11 10 48 48 H 1.09000 * 109.48044 * 62.36992 * 25 24 11 49 49 H 1.08998 * 109.48202 * 182.39573 * 25 24 11 50 50 H 1.08996 * 109.47977 * 58.81965 * 27 26 25 51 51 H 1.08997 * 109.47917 * 178.85818 * 27 26 25 52 52 H 1.09007 * 109.52118 * 177.51330 * 28 27 26 53 53 H 1.09000 * 109.52782 * 297.63693 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4364 2.0818 -1.3983 5 1 1.4797 2.6342 0.7606 6 1 3.5772 1.4231 0.6377 7 6 2.0103 -1.2022 -0.0005 8 1 1.4718 -2.1366 -0.0603 9 7 3.3775 -1.2035 0.0747 10 6 4.1030 -2.4698 0.2019 11 6 5.5940 -2.1862 0.3954 12 7 6.0794 -1.3392 -0.6968 13 6 6.0179 -1.7793 -1.9693 14 8 5.4760 -2.8348 -2.2203 15 6 6.6225 -0.9599 -3.0801 16 6 6.4176 -1.6795 -4.4145 17 6 7.0309 -0.8472 -5.5424 18 1 8.0772 -0.6425 -5.3154 19 6 6.9365 -1.6231 -6.8588 20 6 7.4972 -0.7593 -7.9928 21 6 6.7270 0.5639 -8.0410 22 6 6.8298 1.2550 -6.6788 23 8 6.3197 0.3860 -5.6655 24 6 5.8102 -1.4716 1.7330 25 6 7.3106 -1.2626 1.9543 26 8 7.9765 -2.5266 1.9194 27 6 7.8487 -3.2194 0.6760 28 6 6.3700 -3.5069 0.4035 29 1 -0.4850 0.8401 0.0004 30 1 3.8657 -0.3658 0.0439 31 1 3.9603 -3.0627 -0.7016 32 1 3.7234 -3.0213 1.0620 33 1 6.4451 -0.4617 -0.5043 34 1 6.1396 0.0167 -3.1156 35 1 7.6894 -0.8311 -2.8973 36 1 6.9008 -2.6559 -4.3788 37 1 5.3508 -1.8087 -4.5975 38 1 7.5152 -2.5435 -6.7815 39 1 5.8937 -1.8636 -7.0658 40 1 7.3816 -1.2833 -8.9416 41 1 8.5536 -0.5599 -7.8126 42 1 5.6800 0.3677 -8.2717 43 1 7.1550 1.2077 -8.8093 44 1 6.2479 2.1767 -6.6941 45 1 7.8734 1.4873 -6.4669 46 1 5.4042 -2.0803 2.5409 47 1 5.3066 -0.5052 1.7152 48 1 7.7081 -0.6207 1.1681 49 1 7.4730 -0.7927 2.9242 50 1 8.2531 -2.6029 -0.1267 51 1 8.3987 -4.1591 0.7254 52 1 6.2665 -3.9960 -0.5652 53 1 5.9754 -4.1576 1.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327663098.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:49 Heat of formation + Delta-G solvation = -156.353362 kcal Electronic energy + Delta-G solvation = -31857.176239 eV Core-core repulsion = 27727.433990 eV Total energy + Delta-G solvation = -4129.742249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.79499 -40.42179 -39.49246 -37.38661 -35.52917 -34.89638 -34.53292 -33.43703 -32.58519 -32.09716 -30.81351 -28.51184 -26.78997 -25.19129 -24.89747 -24.54262 -23.13446 -22.73203 -21.49111 -21.10124 -20.46284 -19.76025 -18.26671 -17.51455 -17.26290 -16.98836 -16.78964 -16.74432 -16.48896 -16.29619 -15.65062 -15.60164 -15.41950 -15.28638 -15.02631 -14.92657 -14.59714 -14.44228 -14.23027 -13.80747 -13.66863 -13.58910 -13.45311 -13.13559 -13.00404 -12.88765 -12.85190 -12.75145 -12.31044 -12.14405 -12.12767 -12.08145 -11.88181 -11.83173 -11.71973 -11.57172 -11.36367 -11.17473 -11.05554 -10.67400 -10.46421 -10.30884 -9.92408 -9.27073 -8.05244 -5.38397 1.29045 1.38366 1.44584 1.77000 2.21991 2.45223 2.87991 2.96909 3.24133 3.47538 3.61068 3.72495 3.80799 3.84036 3.92966 3.95899 3.99886 4.06063 4.09816 4.16710 4.26982 4.32390 4.36371 4.42414 4.48610 4.57654 4.65163 4.69568 4.74764 4.76351 4.79162 4.81766 4.84699 4.87139 4.93283 5.03705 5.07617 5.09690 5.11863 5.13263 5.13819 5.18603 5.20962 5.29836 5.41688 5.63592 5.72836 6.17656 6.25851 6.38117 6.64819 7.05253 7.39021 7.79398 8.04104 9.16893 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008200 B = 0.003973 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.701766 B = 7045.869345 C = 9330.464194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.960 3.040 4 H -0.283 1.283 5 H -0.292 1.292 6 H -0.240 1.240 7 C -0.236 4.236 8 H 0.043 0.957 9 N -0.742 5.742 10 C 0.148 3.852 11 C 0.179 3.821 12 N -0.715 5.715 13 C 0.512 3.488 14 O -0.568 6.568 15 C -0.130 4.130 16 C -0.092 4.092 17 C 0.094 3.906 18 H 0.081 0.919 19 C -0.153 4.153 20 C -0.119 4.119 21 C -0.157 4.157 22 C 0.054 3.946 23 O -0.405 6.405 24 C -0.153 4.153 25 C 0.066 3.934 26 O -0.393 6.393 27 C 0.073 3.927 28 C -0.157 4.157 29 H 0.258 0.742 30 H 0.367 0.633 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.409 0.591 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.113 0.887 50 H 0.059 0.941 51 H 0.107 0.893 52 H 0.078 0.922 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.209 1.591 -9.579 28.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.786 3.214 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.164 1.164 7 C -0.367 4.367 8 H 0.061 0.939 9 N -0.388 5.388 10 C 0.021 3.979 11 C 0.092 3.908 12 N -0.368 5.368 13 C 0.300 3.700 14 O -0.447 6.447 15 C -0.169 4.169 16 C -0.130 4.130 17 C 0.036 3.964 18 H 0.099 0.901 19 C -0.190 4.190 20 C -0.157 4.157 21 C -0.195 4.195 22 C -0.022 4.022 23 O -0.325 6.325 24 C -0.191 4.191 25 C -0.011 4.011 26 O -0.312 6.312 27 C -0.003 4.003 28 C -0.196 4.196 29 H 0.067 0.933 30 H 0.201 0.799 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.246 0.754 34 H 0.113 0.887 35 H 0.144 0.856 36 H 0.106 0.894 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.131 0.869 50 H 0.077 0.923 51 H 0.125 0.875 52 H 0.097 0.903 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 26.589 0.690 -9.465 28.232 hybrid contribution -0.915 1.104 -0.422 1.495 sum 25.674 1.795 -9.886 27.570 Atomic orbital electron populations 1.69914 1.07359 1.26748 1.59570 1.25574 0.96174 1.01487 1.02362 0.85348 0.79200 0.79042 0.77841 1.20926 1.21853 1.16374 1.18972 0.83121 0.93243 1.41399 0.93940 1.42395 1.02290 1.04040 1.90116 1.21107 0.90772 0.88090 0.97965 1.20414 0.91760 0.91638 0.86958 1.46000 1.64277 1.20715 1.05791 1.21191 0.78385 0.86287 0.84112 1.90650 1.44282 1.26059 1.83687 1.21640 1.03750 0.99585 0.91954 1.21301 1.01146 0.98451 0.92086 1.22173 0.95860 0.84117 0.94201 0.90146 1.22215 1.01751 0.99751 0.95332 1.21592 1.00072 0.95437 0.98560 1.22199 1.01012 0.97981 0.98309 1.22728 0.99837 0.92822 0.86850 1.87968 1.58322 1.29536 1.56694 1.22427 0.99169 1.01944 0.95554 1.22690 0.89125 0.85390 1.03877 1.87908 1.73969 1.33479 1.35837 1.22528 0.93955 0.97720 0.86119 1.22447 0.97181 0.96382 1.03563 0.93311 0.79890 0.95991 0.96077 0.75448 0.88729 0.85550 0.89353 0.93956 0.89569 0.92990 0.90829 0.90350 0.92703 0.89111 0.88855 0.91569 0.90120 0.90532 0.91388 0.86858 0.92263 0.87491 0.90339 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.56 13.97 21.65 0.30 -65.26 16 2 C -0.06 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.96 45.98 27.85 68.60 1.91 47.89 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.24 -9.78 6.36 99.48 0.63 -9.15 16 7 C -0.24 -14.37 10.47 84.04 0.88 -13.49 16 8 H 0.04 2.90 8.06 -2.91 -0.02 2.88 16 9 N -0.74 -36.33 4.97 -343.43 -1.71 -38.04 16 10 C 0.15 6.31 4.89 86.38 0.42 6.73 16 11 C 0.18 5.38 0.32 3.72 0.00 5.38 16 12 N -0.71 -18.84 3.57 -422.38 -1.51 -20.34 16 13 C 0.51 15.09 7.23 87.66 0.63 15.72 16 14 O -0.57 -21.65 12.30 -3.04 -0.04 -21.69 16 15 C -0.13 -2.83 5.60 29.84 0.17 -2.67 16 16 C -0.09 -2.16 4.21 30.59 0.13 -2.03 16 17 C 0.09 1.77 2.64 30.63 0.08 1.85 16 18 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 19 C -0.15 -2.60 5.42 30.69 0.17 -2.43 16 20 C -0.12 -1.56 6.03 30.72 0.19 -1.38 16 21 C -0.16 -2.25 6.14 30.68 0.19 -2.06 16 22 C 0.05 0.88 6.84 72.01 0.49 1.37 16 23 O -0.41 -9.38 9.94 -148.98 -1.48 -10.86 16 24 C -0.15 -3.96 4.80 30.69 0.15 -3.81 16 25 C 0.07 1.26 6.67 72.01 0.48 1.74 16 26 O -0.39 -8.72 10.77 -148.98 -1.60 -10.33 16 27 C 0.07 1.51 6.68 72.01 0.48 2.00 16 28 C -0.16 -4.20 4.75 30.68 0.15 -4.06 16 29 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 30 H 0.37 16.46 4.45 -92.71 -0.41 16.04 16 31 H 0.02 1.08 6.27 -2.38 -0.01 1.07 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.41 8.28 7.57 -92.72 -0.70 7.57 16 34 H 0.09 2.22 7.82 -2.39 -0.02 2.20 16 35 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.93 8.10 -2.39 -0.02 1.91 16 37 H 0.04 1.32 8.10 -2.39 -0.02 1.30 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.08 2.12 7.43 -2.39 -0.02 2.11 16 48 H 0.07 1.03 7.12 -2.39 -0.02 1.02 16 49 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.06 1.09 7.75 -2.39 -0.02 1.08 16 51 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.08 2.39 6.21 -2.38 -0.01 2.38 16 53 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -80.53 401.45 0.65 -79.88 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.29 Total: 39.41 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.07 Total: -0.66 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -2.91 Total: -123.65 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -3.12 Total: -42.88 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.91 Total: 47.89 kcal Total: -80.53 0.65 -79.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327663098.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.478 kcal (2) G-P(sol) polarization free energy of solvation -80.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds