Wall clock time and date at job start Sat Apr 11 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47528 * 2 1 4 4 C 1.52995 * 109.49949 * 55.33091 * 3 2 1 5 5 O 1.42899 * 109.47237 * 64.76816 * 4 3 2 6 6 C 1.53045 * 109.49610 * 295.23160 * 3 2 1 7 7 C 1.53039 * 109.53785 * 301.41386 * 6 3 2 8 8 C 1.53193 * 109.31367 * 298.63242 * 7 6 3 9 9 N 1.46927 * 108.77291 * 54.63599 * 8 7 6 10 10 C 1.34785 * 120.62918 * 126.36810 * 9 8 7 11 11 O 1.21344 * 119.99852 * 175.29640 * 10 9 8 12 12 C 1.49444 * 119.99989 * 355.29368 * 10 9 8 13 13 O 1.21351 * 119.99859 * 6.33480 * 12 10 9 14 14 N 1.34778 * 120.00149 * 186.33426 * 12 10 9 15 15 C 1.46500 * 120.00130 * 180.02562 * 14 12 10 16 16 C 1.52993 * 109.46879 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47372 * 299.99736 * 16 15 14 18 18 C 1.53003 * 109.47405 * 60.00118 * 16 15 14 19 19 C 1.50704 * 109.47159 * 179.97438 * 16 15 14 20 20 H 1.08001 * 119.99958 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00218 * 179.97438 * 19 16 15 22 22 N 1.31511 * 120.00197 * 0.02562 * 21 19 16 23 23 Si 1.86803 * 120.00031 * 180.02562 * 21 19 16 24 24 H 1.48499 * 109.46835 * 60.00509 * 23 21 19 25 25 H 1.48503 * 109.47080 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47089 * 300.00414 * 23 21 19 27 27 C 1.46924 * 118.74276 * 306.38950 * 9 8 7 28 28 H 1.09000 * 109.47106 * 64.77795 * 1 2 3 29 29 H 1.09000 * 109.47550 * 184.78172 * 1 2 3 30 30 H 1.09001 * 109.46868 * 304.78358 * 1 2 3 31 31 H 1.08999 * 109.46745 * 239.99448 * 2 1 3 32 32 H 1.09001 * 109.47033 * 120.00002 * 2 1 3 33 33 H 1.09001 * 109.47588 * 184.77208 * 4 3 2 34 34 H 1.09005 * 109.47143 * 304.76716 * 4 3 2 35 35 H 0.96700 * 113.99803 * 180.02562 * 5 4 3 36 36 H 1.08996 * 109.46065 * 61.43810 * 6 3 2 37 37 H 1.09001 * 109.45521 * 181.39356 * 6 3 2 38 38 H 1.09000 * 109.49590 * 58.58571 * 7 6 3 39 39 H 1.09005 * 109.49572 * 178.64953 * 7 6 3 40 40 H 1.09002 * 109.58426 * 174.41881 * 8 7 6 41 41 H 1.09002 * 109.58999 * 294.70604 * 8 7 6 42 42 H 0.96999 * 119.99484 * 359.97438 * 14 12 10 43 43 H 1.09001 * 109.46604 * 299.99841 * 15 14 12 44 44 H 1.08999 * 109.46982 * 59.99544 * 15 14 12 45 45 H 1.08993 * 109.47371 * 60.00132 * 17 16 15 46 46 H 1.08998 * 109.47223 * 180.02562 * 17 16 15 47 47 H 1.09006 * 109.47043 * 299.99941 * 17 16 15 48 48 H 1.08993 * 109.47219 * 59.99532 * 18 16 15 49 49 H 1.08996 * 109.47144 * 180.02562 * 18 16 15 50 50 H 1.09002 * 109.46579 * 299.99314 * 18 16 15 51 51 H 0.96998 * 120.00386 * 179.97438 * 22 21 19 52 52 H 1.08998 * 109.58520 * 293.82796 * 27 9 8 53 53 H 1.08998 * 109.59039 * 173.39507 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4369 2.1974 1.1861 5 8 1.9108 1.6242 2.4064 6 6 1.6305 2.1290 -1.3051 7 6 2.2062 1.3549 -2.4931 8 6 3.7356 1.3562 -2.4055 9 7 4.1344 0.8307 -1.0926 10 6 5.0034 -0.1953 -0.9987 11 8 5.3908 -0.5646 0.0904 12 6 5.4899 -0.8782 -2.2358 13 8 5.1946 -0.4383 -3.3276 14 7 6.2564 -1.9825 -2.1390 15 6 6.7337 -2.6515 -3.3517 16 6 7.5764 -3.8684 -2.9647 17 6 8.7740 -3.4143 -2.1279 18 6 6.7230 -4.8409 -2.1480 19 6 8.0669 -4.5571 -4.2122 20 1 7.8042 -4.1657 -5.1839 21 6 8.8518 -5.6863 -4.1131 22 7 9.1721 -6.1627 -2.9299 23 14 9.4604 -6.5395 -5.6595 24 1 10.2883 -5.5955 -6.4523 25 1 10.2782 -7.7207 -5.2838 26 1 8.2980 -6.9807 -6.4714 27 6 3.5676 1.4446 0.1159 28 1 -0.3633 0.4379 -0.9297 29 1 -0.3634 -1.0241 0.0857 30 1 -0.3633 0.5863 0.8440 31 1 1.8932 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.7325 3.2455 1.1381 34 1 0.3499 2.1245 1.1485 35 1 1.5679 2.0539 3.2019 36 1 0.5433 2.1508 -1.3783 37 1 2.0154 3.1487 -1.3151 38 1 1.8413 0.3281 -2.4696 39 1 1.8943 1.8308 -3.4229 40 1 4.1472 0.7241 -3.1924 41 1 4.1076 2.3741 -2.5223 42 1 6.4927 -2.3338 -1.2662 43 1 5.8804 -2.9747 -3.9481 44 1 7.3420 -1.9589 -3.9333 45 1 8.4190 -2.9165 -1.2256 46 1 9.3746 -4.2812 -1.8526 47 1 9.3820 -2.7215 -2.7098 48 1 5.8698 -5.1645 -2.7441 49 1 7.3235 -5.7076 -1.8719 50 1 6.3679 -4.3431 -1.2457 51 1 9.7240 -6.9573 -2.8601 52 1 3.9257 2.4700 0.2072 53 1 3.8683 0.8709 0.9926 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328962749.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:14 Heat of formation + Delta-G solvation = -133.272610 kcal Electronic energy + Delta-G solvation = -31744.867222 eV Core-core repulsion = 27616.125830 eV Total energy + Delta-G solvation = -4128.741393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.21523 -40.62278 -39.32012 -38.33631 -37.34313 -35.53446 -34.81862 -32.82251 -32.75850 -31.22054 -28.37386 -27.60643 -27.40334 -26.94257 -26.51336 -24.89357 -23.71137 -22.97178 -21.37962 -20.62755 -19.20505 -18.85411 -18.30996 -17.97885 -17.75140 -17.18901 -16.82556 -16.72056 -16.56901 -16.05281 -15.82303 -15.58184 -15.08022 -14.95672 -14.77367 -14.55846 -14.53475 -14.26656 -14.06113 -13.79652 -13.67649 -13.42385 -13.22476 -13.12267 -12.95503 -12.82028 -12.69095 -12.61747 -12.28775 -12.23211 -12.12550 -11.96903 -11.89237 -11.73295 -11.52014 -11.38025 -11.24989 -11.15217 -10.75388 -10.74399 -10.41480 -10.18430 -10.02027 -9.74291 -8.01358 -6.18309 0.31021 1.29587 1.46508 1.47619 1.54179 2.09723 2.43241 2.55325 3.22556 3.24269 3.31884 3.69360 3.77512 3.89916 4.05806 4.21157 4.30556 4.32998 4.43612 4.46641 4.48506 4.57520 4.61435 4.65601 4.67172 4.71802 4.75092 4.83423 4.87551 4.97185 4.99946 5.00967 5.02184 5.07584 5.14999 5.15624 5.24002 5.26562 5.32402 5.36749 5.41432 5.56629 5.61289 5.63135 5.67047 5.99068 6.09347 6.17908 6.26366 6.40398 6.71296 6.85730 6.94970 6.99155 7.49860 8.97869 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022312 B = 0.002434 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.611579 B =11501.566126 C =11783.024745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.066 4.066 4 C 0.086 3.914 5 O -0.592 6.592 6 C -0.106 4.106 7 C -0.129 4.129 8 C 0.037 3.963 9 N -0.569 5.569 10 C 0.504 3.496 11 O -0.551 6.551 12 C 0.502 3.498 13 O -0.529 6.529 14 N -0.679 5.679 15 C 0.143 3.857 16 C 0.052 3.948 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.527 4.527 20 H 0.054 0.946 21 C 0.026 3.974 22 N -0.902 5.902 23 Si 0.949 3.051 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.121 3.879 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.395 0.605 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.412 0.588 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.027 0.973 46 H 0.063 0.937 47 H 0.024 0.976 48 H 0.024 0.976 49 H 0.063 0.937 50 H 0.026 0.974 51 H 0.260 0.740 52 H 0.083 0.917 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.799 19.736 6.751 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.067 4.067 4 C 0.008 3.992 5 O -0.400 6.400 6 C -0.143 4.143 7 C -0.166 4.166 8 C -0.083 4.083 9 N -0.301 5.301 10 C 0.287 3.713 11 O -0.429 6.429 12 C 0.283 3.717 13 O -0.409 6.409 14 N -0.329 5.329 15 C 0.020 3.980 16 C 0.051 3.949 17 C -0.183 4.183 18 C -0.182 4.182 19 C -0.565 4.565 20 H 0.072 0.928 21 C -0.174 4.174 22 N -0.541 5.541 23 Si 0.776 3.224 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.200 1.200 27 C -0.001 4.001 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.160 0.840 41 H 0.098 0.902 42 H 0.249 0.751 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.043 0.957 48 H 0.043 0.957 49 H 0.082 0.918 50 H 0.045 0.955 51 H 0.069 0.931 52 H 0.101 0.899 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.367 19.293 6.224 27.355 hybrid contribution 0.571 -0.686 0.130 0.901 sum -17.796 18.608 6.354 26.520 Atomic orbital electron populations 1.21840 0.94026 1.01812 1.02708 1.21460 0.97290 0.95629 1.00339 1.20974 0.93231 0.96330 0.96170 1.22291 0.98242 0.95655 0.82968 1.86506 1.74372 1.62374 1.16745 1.21589 1.02135 0.99125 0.91437 1.21900 0.93766 1.01176 0.99802 1.23462 0.97221 1.02453 0.85190 1.48051 1.41260 1.30904 1.09907 1.20072 0.80942 0.81613 0.88709 1.90735 1.57691 1.65348 1.29150 1.20310 0.79947 0.81908 0.89495 1.90237 1.57164 1.64139 1.29367 1.46137 1.48460 1.26116 1.12224 1.21591 0.97408 0.94232 0.84736 1.18364 0.91678 0.90109 0.94764 1.21716 0.99517 1.00006 0.97013 1.21708 0.98203 1.01264 0.96988 1.21219 1.31862 1.11053 0.92373 0.92811 1.25513 0.96037 0.97477 0.98351 1.69923 1.37503 1.23156 1.23508 0.85756 0.78299 0.77945 0.80445 1.20015 1.21213 1.20008 1.21800 0.93435 0.98370 0.86499 0.91357 0.93422 0.91254 0.93674 0.94125 0.91871 0.90997 0.75484 0.89292 0.89990 0.92540 0.88467 0.83972 0.90150 0.75080 0.92349 0.92395 0.95444 0.91780 0.95668 0.95659 0.91797 0.95501 0.93056 0.89907 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.22 71.98 0.66 -1.51 16 2 C -0.11 -2.25 4.42 30.59 0.14 -2.11 16 3 C -0.07 -1.08 0.38 -52.10 -0.02 -1.10 16 4 C 0.09 1.00 5.60 71.98 0.40 1.40 16 5 O -0.59 -8.92 12.52 -148.98 -1.87 -10.79 16 6 C -0.11 -1.27 4.43 30.62 0.14 -1.14 16 7 C -0.13 -2.08 5.74 30.67 0.18 -1.90 16 8 C 0.04 0.80 6.28 86.36 0.54 1.34 16 9 N -0.57 -14.90 2.49 -820.47 -2.04 -16.94 16 10 C 0.50 16.76 7.75 87.27 0.68 17.43 16 11 O -0.55 -20.94 15.92 -3.23 -0.05 -20.99 16 12 C 0.50 17.75 7.81 87.27 0.68 18.43 16 13 O -0.53 -19.03 13.01 -3.25 -0.04 -19.07 16 14 N -0.68 -25.44 4.95 -464.43 -2.30 -27.74 16 15 C 0.14 5.93 4.50 86.38 0.39 6.32 16 16 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 17 C -0.12 -5.79 8.08 71.98 0.58 -5.21 16 18 C -0.12 -5.73 8.08 71.98 0.58 -5.15 16 19 C -0.53 -27.42 8.01 25.60 0.21 -27.22 16 20 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 21 C 0.03 1.36 5.15 84.65 0.44 1.80 16 22 N -0.90 -48.84 9.35 21.45 0.20 -48.64 16 23 Si 0.95 42.29 29.54 68.60 2.03 44.31 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C 0.12 2.70 4.81 86.37 0.42 3.12 16 28 H 0.07 0.83 6.83 -2.39 -0.02 0.81 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.84 5.98 -2.39 -0.01 0.83 16 31 H 0.04 1.10 5.85 -2.39 -0.01 1.09 16 32 H 0.04 1.05 7.94 -2.39 -0.02 1.03 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 0.59 5.98 -2.38 -0.01 0.58 16 35 H 0.40 2.28 9.12 -74.06 -0.68 1.61 16 36 H 0.09 0.77 6.74 -2.39 -0.02 0.76 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 1.10 6.23 -2.39 -0.01 1.09 16 39 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.14 3.90 3.70 -85.71 -0.32 3.58 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.41 15.46 5.65 -92.71 -0.52 14.94 16 43 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 46 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 47 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 50 H 0.03 1.10 6.86 -2.39 -0.02 1.08 16 51 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 52 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.07 2.12 6.66 -2.39 -0.02 2.10 16 Total: -1.00 -62.89 393.90 1.33 -61.56 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.57 Total: 31.41 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 5.98 Total: 6.89 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -4.14 Total: -93.31 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -1.96 Total: -50.86 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -62.89 1.33 -61.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328962749.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.711 kcal (2) G-P(sol) polarization free energy of solvation -62.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds