Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48507 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47275 * 299.99986 * 3 2 1 6 6 H 1.48503 * 109.47286 * 60.00284 * 3 2 1 7 7 C 1.38807 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00035 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00059 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46966 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47006 * 179.97438 * 11 10 9 13 13 O 1.42905 * 109.46721 * 179.97438 * 12 11 10 14 14 C 1.42903 * 113.99528 * 179.97438 * 13 12 11 15 15 C 1.53042 * 109.46029 * 209.99692 * 14 13 12 16 16 C 1.53191 * 109.31402 * 178.63025 * 15 14 13 17 17 N 1.46929 * 108.77559 * 54.63860 * 16 15 14 18 18 C 1.34769 * 120.62981 * 126.36906 * 17 16 15 19 19 O 1.21281 * 120.00219 * 4.69538 * 18 17 16 20 20 C 1.50696 * 119.99829 * 184.69269 * 18 17 16 21 21 C 1.53179 * 109.54772 * 85.11505 * 20 18 17 22 22 C 1.53087 * 109.16803 * 176.84656 * 21 20 18 23 23 O 1.42903 * 109.41557 * 302.39412 * 22 21 20 24 24 C 1.42908 * 114.09914 * 61.15468 * 23 22 21 25 25 C 1.53087 * 109.41393 * 298.84360 * 24 23 22 26 26 C 1.46927 * 118.73741 * 306.64386 * 17 16 15 27 27 C 1.52764 * 109.00789 * 53.30590 * 26 17 16 28 28 H 0.97004 * 119.99942 * 359.97438 * 1 2 3 29 29 H 0.96999 * 119.99979 * 0.02562 * 9 7 2 30 30 H 1.08991 * 109.47354 * 60.00045 * 10 9 7 31 31 H 1.09002 * 109.47166 * 299.99760 * 10 9 7 32 32 H 1.09004 * 109.47242 * 60.00123 * 11 10 9 33 33 H 1.09004 * 109.47395 * 300.00046 * 11 10 9 34 34 H 1.08993 * 109.47216 * 60.00504 * 12 11 10 35 35 H 1.09002 * 109.47157 * 299.99470 * 12 11 10 36 36 H 1.09000 * 109.46329 * 329.97296 * 14 13 12 37 37 H 1.09004 * 109.49514 * 58.68231 * 15 14 13 38 38 H 1.08999 * 109.52706 * 298.60304 * 15 14 13 39 39 H 1.09002 * 109.58547 * 294.85182 * 16 15 14 40 40 H 1.08996 * 109.70397 * 174.49845 * 16 15 14 41 41 H 1.08996 * 109.61890 * 324.88929 * 20 18 17 42 42 H 1.09000 * 109.51858 * 296.75651 * 21 20 18 43 43 H 1.09004 * 109.51759 * 56.93988 * 21 20 18 44 44 H 1.08993 * 109.48119 * 182.41090 * 22 21 20 45 45 H 1.08996 * 109.47828 * 62.36970 * 22 21 20 46 46 H 1.08997 * 109.47777 * 178.86081 * 24 23 22 47 47 H 1.08990 * 109.48110 * 58.82763 * 24 23 22 48 48 H 1.09000 * 109.52478 * 297.70473 * 25 24 23 49 49 H 1.09004 * 109.52518 * 177.51585 * 25 24 23 50 50 H 1.08997 * 109.58781 * 173.14642 * 26 17 16 51 51 H 1.09008 * 109.58433 * 293.56811 * 26 17 16 52 52 H 1.09000 * 109.56519 * 185.55197 * 27 26 17 53 53 H 1.09001 * 109.35469 * 65.50343 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 6 1.0639 -4.8196 0.0022 12 6 1.8289 -6.1447 0.0016 13 8 0.9002 -7.2308 0.0028 14 6 1.5148 -8.5209 0.0017 15 6 0.6049 -9.5186 -0.7185 16 6 1.2821 -10.8924 -0.7477 17 7 1.6307 -11.2771 0.6268 18 6 1.2269 -12.4594 1.1323 19 8 0.6430 -13.2534 0.4256 20 6 1.5009 -12.7947 2.5757 21 6 0.3928 -12.2101 3.4570 22 6 0.6369 -12.6222 4.9110 23 8 0.6825 -14.0477 4.9995 24 6 1.7295 -14.6468 4.2332 25 6 1.5291 -14.3161 2.7520 26 6 2.4227 -10.3458 1.4417 27 6 1.7374 -8.9805 1.4445 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.6854 -3.7141 0.8910 31 1 2.6841 -3.7149 -0.8889 32 1 0.4369 -4.7621 -0.8875 33 1 0.4375 -4.7617 0.8925 34 1 2.4561 -6.2025 0.8911 35 1 2.4549 -6.2024 -0.8889 36 1 2.4736 -8.4660 -0.5139 37 1 0.4278 -9.1785 -1.7389 38 1 -0.3454 -9.5925 -0.1897 39 1 2.1869 -10.8410 -1.3534 40 1 0.6000 -11.6294 -1.1716 41 1 2.4622 -12.3754 2.8727 42 1 0.4017 -11.1229 3.3800 43 1 -0.5738 -12.5916 3.1276 44 1 -0.1720 -12.2448 5.5365 45 1 1.5849 -12.2064 5.2523 46 1 1.7075 -15.7278 4.3705 47 1 2.6917 -14.2575 4.5656 48 1 0.5855 -14.7400 2.4084 49 1 2.3507 -14.7349 2.1708 50 1 2.4910 -10.7209 2.4628 51 1 3.4224 -10.2489 1.0182 52 1 2.3664 -8.2574 1.9636 53 1 0.7768 -9.0594 1.9535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329764237.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = -154.772883 kcal Electronic energy + Delta-G solvation = -29825.834829 eV Core-core repulsion = 25696.161115 eV Total energy + Delta-G solvation = -4129.673714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.75586 -40.11147 -39.34286 -37.75277 -36.81259 -34.95210 -34.26093 -32.91016 -32.20003 -32.02115 -31.24987 -27.52839 -26.81188 -25.38999 -24.58976 -24.47896 -24.01158 -22.51478 -22.24574 -21.28284 -19.89059 -19.14047 -18.57968 -17.70015 -17.44490 -17.01677 -16.87983 -16.60609 -16.53257 -16.29632 -15.77372 -15.71089 -15.41142 -15.35271 -15.25167 -14.88277 -14.76545 -14.47740 -14.22251 -14.07481 -13.71632 -13.38897 -13.30366 -13.26758 -12.91125 -12.88736 -12.57008 -12.47493 -12.40913 -12.29103 -12.26443 -12.08737 -12.02359 -11.82031 -11.74628 -11.72056 -11.49794 -11.42906 -10.96273 -10.94519 -10.47136 -10.35759 -9.79638 -9.03058 -7.96576 -5.26768 1.47411 1.47925 1.49250 1.59457 1.88761 2.50266 2.65790 2.96464 3.34489 3.37440 3.63719 3.67077 3.70798 3.79381 3.93016 3.98243 3.98953 4.07114 4.09385 4.18042 4.26592 4.28108 4.28786 4.36982 4.44794 4.47235 4.55190 4.58784 4.61623 4.63767 4.71629 4.73956 4.75773 4.77218 4.81173 4.81568 4.82514 4.93691 5.05239 5.07201 5.10811 5.21990 5.25056 5.33085 5.33632 5.46773 5.48783 6.25040 6.26599 6.29743 6.34004 7.06149 7.31294 8.06794 8.29423 9.27469 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021888 B = 0.001610 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.955935 B =17385.052634 C =18132.916715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.751 5.751 10 C 0.155 3.845 11 C -0.114 4.114 12 C 0.078 3.922 13 O -0.402 6.402 14 C 0.085 3.915 15 C -0.126 4.126 16 C 0.117 3.883 17 N -0.610 5.610 18 C 0.517 3.483 19 O -0.584 6.584 20 C -0.106 4.106 21 C -0.141 4.141 22 C 0.061 3.939 23 O -0.406 6.406 24 C 0.062 3.938 25 C -0.137 4.137 26 C 0.107 3.893 27 C -0.155 4.155 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.029 0.971 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.126 0.874 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.104 0.896 45 H 0.077 0.923 46 H 0.104 0.896 47 H 0.074 0.926 48 H 0.055 0.945 49 H 0.082 0.918 50 H 0.113 0.887 51 H 0.094 0.906 52 H 0.093 0.907 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.988 -31.738 7.675 33.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.393 5.393 10 C 0.029 3.971 11 C -0.152 4.152 12 C 0.001 3.999 13 O -0.322 6.322 14 C 0.028 3.972 15 C -0.164 4.164 16 C -0.006 4.006 17 N -0.343 5.343 18 C 0.307 3.693 19 O -0.464 6.464 20 C -0.126 4.126 21 C -0.179 4.179 22 C -0.015 4.015 23 O -0.326 6.326 24 C -0.015 4.015 25 C -0.175 4.175 26 C -0.015 4.015 27 C -0.193 4.193 28 H 0.060 0.940 29 H 0.204 0.796 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.143 0.857 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.095 0.905 46 H 0.122 0.878 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.101 0.899 50 H 0.131 0.869 51 H 0.112 0.888 52 H 0.112 0.888 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.545 -32.140 7.404 34.071 hybrid contribution -0.254 1.330 -0.587 1.476 sum 8.290 -30.810 6.817 32.626 Atomic orbital electron populations 1.69842 1.06796 1.26122 1.59459 1.25660 0.96463 1.01416 1.03553 0.85005 0.78282 0.79363 0.76671 1.18712 1.22024 1.21957 1.19730 0.91703 0.85239 1.41320 0.90191 1.42622 1.05732 1.01433 1.89552 1.20671 0.93801 0.84377 0.98238 1.21488 0.98643 0.92979 1.02128 1.22349 0.91260 0.84907 1.01351 1.87921 1.34723 1.14332 1.95237 1.22196 0.96538 0.82386 0.96106 1.21918 0.98929 0.93645 1.01908 1.21545 1.00929 0.95036 0.83048 1.48296 1.53588 1.17835 1.14544 1.21079 0.77282 0.80713 0.90221 1.90676 1.43805 1.49654 1.62283 1.21457 1.02445 0.98274 0.90471 1.22137 0.97573 1.02055 0.96181 1.22711 1.03540 0.80660 0.94576 1.87939 1.54268 1.20949 1.69414 1.22719 0.90762 0.99483 0.88504 1.22041 1.03251 0.93787 0.98440 1.21944 0.94668 0.87602 0.97287 1.22348 1.02340 0.97426 0.97184 0.93960 0.79582 0.95324 0.95613 0.92563 0.92295 0.91573 0.92069 0.90358 0.89750 0.92445 0.89364 0.90260 0.85667 0.88971 0.92775 0.87791 0.90489 0.87783 0.90750 0.92611 0.89919 0.86938 0.88789 0.88840 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.20 13.06 21.65 0.28 -59.91 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 3 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.75 -38.84 5.60 -343.47 -1.92 -40.77 16 10 C 0.16 6.06 6.26 86.38 0.54 6.60 16 11 C -0.11 -3.70 5.70 30.59 0.17 -3.52 16 12 C 0.08 1.84 5.75 71.98 0.41 2.26 16 13 O -0.40 -9.68 9.99 -148.98 -1.49 -11.17 16 14 C 0.09 1.39 2.57 30.62 0.08 1.47 16 15 C -0.13 -2.11 5.73 30.67 0.18 -1.93 16 16 C 0.12 1.78 6.42 86.36 0.55 2.33 16 17 N -0.61 -8.54 2.98 -819.73 -2.44 -10.98 16 18 C 0.52 9.26 6.81 87.66 0.60 9.86 16 19 O -0.58 -15.73 15.47 -3.03 -0.05 -15.77 16 20 C -0.11 -1.21 1.77 -11.42 -0.02 -1.23 16 21 C -0.14 -1.61 5.31 30.68 0.16 -1.45 16 22 C 0.06 0.59 6.84 72.01 0.49 1.08 16 23 O -0.41 -5.91 10.77 -148.98 -1.60 -7.51 16 24 C 0.06 0.60 6.84 72.01 0.49 1.10 16 25 C -0.14 -1.76 5.01 30.68 0.15 -1.60 16 26 C 0.11 0.84 6.24 86.22 0.54 1.37 16 27 C -0.15 -1.85 5.68 30.53 0.17 -1.68 16 28 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.37 20.69 7.67 -92.71 -0.71 19.97 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.07 1.32 7.84 -2.39 -0.02 1.30 16 35 H 0.06 1.30 8.08 -2.39 -0.02 1.28 16 36 H 0.08 1.04 7.79 -2.39 -0.02 1.02 16 37 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.52 7.03 -2.39 -0.02 1.51 16 41 H 0.13 0.65 6.30 -2.39 -0.02 0.63 16 42 H 0.09 0.83 7.91 -2.39 -0.02 0.81 16 43 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.06 1.05 7.77 -2.39 -0.02 1.03 16 49 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.11 0.40 5.19 -2.39 -0.01 0.38 16 51 H 0.09 0.44 8.14 -2.38 -0.02 0.43 16 52 H 0.09 0.96 7.84 -2.39 -0.02 0.94 16 53 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -75.81 412.83 0.81 -75.00 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.17 Total: 25.69 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.83 Total: -2.55 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.08 Total: -111.67 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -3.14 Total: -34.45 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -75.81 0.81 -75.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329764237.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.768 kcal (2) G-P(sol) polarization free energy of solvation -75.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds