Wall clock time and date at job start Sat Apr 11 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00342 * 2 1 4 4 H 1.48504 * 109.46923 * 269.99840 * 3 2 1 5 5 H 1.48501 * 109.47129 * 29.99408 * 3 2 1 6 6 H 1.48503 * 109.47284 * 149.99875 * 3 2 1 7 7 C 1.38817 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99689 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99888 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46936 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47166 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.47444 * 179.97438 * 12 11 10 14 14 C 1.42889 * 114.00283 * 179.97438 * 13 12 11 15 15 C 1.53037 * 109.46162 * 150.00595 * 14 13 12 16 16 C 1.53192 * 109.31593 * 181.39080 * 15 14 13 17 17 N 1.46928 * 108.77264 * 305.36272 * 16 15 14 18 18 C 1.34783 * 120.63057 * 233.58779 * 17 16 15 19 19 O 1.21278 * 119.99848 * 359.97438 * 18 17 16 20 20 C 1.50692 * 119.99998 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47076 * 179.97438 * 20 18 17 22 22 H 1.08996 * 110.45687 * 307.60195 * 21 20 18 23 23 C 1.54517 * 110.51084 * 185.00159 * 21 20 18 24 24 C 1.54479 * 104.06037 * 241.21567 * 23 21 20 25 25 O 1.44433 * 104.80518 * 336.02227 * 24 23 21 26 26 C 1.44422 * 105.27452 * 40.51075 * 25 24 23 27 27 C 1.46923 * 118.73880 * 53.85890 * 17 16 15 28 28 C 1.53044 * 109.46531 * 270.07401 * 14 13 12 29 29 H 0.97003 * 119.99977 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00063 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47906 * 59.99703 * 10 9 7 32 32 H 1.09001 * 109.47134 * 299.99190 * 10 9 7 33 33 H 1.08993 * 109.47666 * 59.99307 * 11 10 9 34 34 H 1.09004 * 109.46802 * 299.99109 * 11 10 9 35 35 H 1.09006 * 109.46964 * 59.99240 * 12 11 10 36 36 H 1.09007 * 109.46928 * 299.99889 * 12 11 10 37 37 H 1.09004 * 109.44825 * 30.03777 * 14 13 12 38 38 H 1.08997 * 109.50028 * 61.43651 * 15 14 13 39 39 H 1.09005 * 109.52396 * 301.34908 * 15 14 13 40 40 H 1.08999 * 109.58694 * 185.57826 * 16 15 14 41 41 H 1.09001 * 109.70775 * 65.21401 * 16 15 14 42 42 H 1.08997 * 109.47276 * 60.00073 * 20 18 17 43 43 H 1.09003 * 109.47409 * 300.00012 * 20 18 17 44 44 H 1.08991 * 110.51174 * 359.85967 * 23 21 20 45 45 H 1.08995 * 110.51247 * 122.57446 * 23 21 20 46 46 H 1.08997 * 110.37024 * 94.85221 * 24 23 21 47 47 H 1.08995 * 110.37315 * 217.18852 * 24 23 21 48 48 H 1.08995 * 110.37333 * 200.65712 * 26 25 24 49 49 H 1.09001 * 110.37394 * 78.31441 * 26 25 24 50 50 H 1.08999 * 109.58600 * 65.93095 * 27 17 16 51 51 H 1.09008 * 109.58581 * 186.35150 * 27 17 16 52 52 H 1.09001 * 109.49494 * 298.56476 * 28 14 13 53 53 H 1.09002 * 109.49808 * 58.62712 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0636 -4.8197 0.0008 12 6 1.8285 -6.1448 0.0013 13 8 0.8999 -7.2309 0.0011 14 6 1.5143 -8.5210 0.0010 15 6 0.6053 -9.5188 0.7221 16 6 1.2826 -10.8925 0.7505 17 7 1.6298 -11.2770 -0.6244 18 6 1.2262 -12.4597 -1.1294 19 8 0.5704 -13.2183 -0.4472 20 6 1.5898 -12.8395 -2.5416 21 6 1.0138 -14.2200 -2.8630 22 1 1.3081 -14.9423 -2.1016 23 6 1.4769 -14.6880 -4.2608 24 6 0.1630 -14.8491 -5.0571 25 8 -0.8531 -15.0631 -4.0531 26 6 -0.5252 -14.1538 -2.9801 27 6 2.4303 -10.3505 -1.4364 28 6 1.7354 -8.9804 -1.4420 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 2.6839 -3.7143 0.8921 32 1 2.6851 -3.7150 -0.8879 33 1 0.4378 -4.7621 -0.8898 34 1 0.4360 -4.7618 0.8901 35 1 2.4545 -6.2026 0.8918 36 1 2.4559 -6.2025 -0.8882 37 1 2.4737 -8.4661 0.5156 38 1 -0.3452 -9.5927 0.1938 39 1 0.4288 -9.1791 1.7427 40 1 0.5990 -11.6283 1.1741 41 1 2.1878 -10.8436 1.3557 42 1 2.6748 -12.8665 -2.6427 43 1 1.1787 -12.1039 -3.2331 44 1 2.1142 -13.9348 -4.7239 45 1 2.0001 -15.6415 -4.1904 46 1 -0.0498 -13.9436 -5.6253 47 1 0.2259 -15.7098 -5.7228 48 1 -0.9909 -14.4804 -2.0503 49 1 -0.8434 -13.1416 -3.2298 50 1 3.4274 -10.2558 -1.0064 51 1 2.5043 -10.7285 -2.4561 52 1 0.7743 -9.0593 -1.9500 53 1 2.3634 -8.2569 -1.9620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329773823.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:25 Heat of formation + Delta-G solvation = -153.288297 kcal Electronic energy + Delta-G solvation = -29337.215739 eV Core-core repulsion = 25207.606401 eV Total energy + Delta-G solvation = -4129.609338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.51017 -40.28456 -39.45659 -37.70629 -36.79610 -34.67909 -34.27623 -33.01157 -32.14773 -31.27772 -30.63017 -28.19581 -26.95756 -25.50742 -24.49351 -24.11633 -23.71164 -22.49130 -22.09658 -21.20087 -19.98619 -19.13697 -18.43631 -17.72565 -17.37405 -17.01144 -16.89545 -16.68908 -16.57424 -16.25049 -15.96202 -15.69397 -15.41874 -15.25046 -15.09298 -14.97629 -14.63828 -14.34861 -14.00383 -13.85333 -13.67086 -13.38878 -13.28674 -13.03461 -12.87682 -12.85658 -12.56478 -12.46413 -12.41955 -12.27388 -12.12234 -12.08147 -12.04591 -11.88625 -11.79665 -11.72391 -11.50993 -11.47705 -10.94618 -10.81228 -10.77810 -10.38599 -9.73657 -9.02971 -7.96210 -5.26465 1.47924 1.50358 1.58908 1.59550 1.95679 2.50935 2.66725 3.05056 3.37641 3.38014 3.66817 3.74617 3.76793 3.86011 3.89648 3.98546 4.03538 4.09378 4.13636 4.21786 4.29502 4.29882 4.30975 4.37162 4.39361 4.49717 4.54917 4.62155 4.64355 4.71910 4.73804 4.77889 4.78437 4.81856 4.83158 4.85822 4.86652 4.92567 4.98072 5.12491 5.14216 5.24263 5.24792 5.32956 5.33661 5.48594 5.50451 5.85489 6.25154 6.34839 6.37077 7.14143 7.31444 8.06942 8.29715 9.27632 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.001476 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.631950 B =18963.656891 C =19435.265192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.250 4.250 8 H 0.080 0.920 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.114 4.114 12 C 0.078 3.922 13 O -0.404 6.404 14 C 0.084 3.916 15 C -0.126 4.126 16 C 0.118 3.882 17 N -0.614 5.614 18 C 0.507 3.493 19 O -0.583 6.583 20 C -0.126 4.126 21 C -0.103 4.103 22 H 0.075 0.925 23 C -0.143 4.143 24 C 0.033 3.967 25 O -0.409 6.409 26 C 0.051 3.949 27 C 0.110 3.890 28 C -0.155 4.155 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.070 0.930 47 H 0.101 0.899 48 H 0.074 0.926 49 H 0.059 0.941 50 H 0.094 0.906 51 H 0.117 0.883 52 H 0.062 0.938 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.374 -32.671 -8.049 34.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.382 4.382 8 H 0.098 0.902 9 N -0.393 5.393 10 C 0.029 3.971 11 C -0.152 4.152 12 C 0.002 3.998 13 O -0.324 6.324 14 C 0.027 3.973 15 C -0.164 4.164 16 C -0.005 4.005 17 N -0.347 5.347 18 C 0.298 3.702 19 O -0.463 6.463 20 C -0.165 4.165 21 C -0.123 4.123 22 H 0.093 0.907 23 C -0.181 4.181 24 C -0.044 4.044 25 O -0.328 6.328 26 C -0.025 4.025 27 C -0.012 4.012 28 C -0.194 4.194 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.149 0.851 43 H 0.134 0.866 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.112 0.888 51 H 0.135 0.865 52 H 0.081 0.919 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.831 -33.096 -7.694 35.108 hybrid contribution -0.282 1.352 0.357 1.427 sum 8.550 -31.744 -7.337 33.684 Atomic orbital electron populations 1.69835 1.06806 1.26197 1.59350 1.25659 0.96451 1.01413 1.03483 0.85068 0.77691 0.79017 0.77529 1.21212 1.22216 1.19152 1.19697 0.91701 0.85260 1.41535 0.90209 1.42612 1.05715 1.01420 1.89580 1.20672 0.93797 0.84377 0.98240 1.21489 0.98650 0.93006 1.02101 1.22346 0.91256 0.84914 1.01333 1.87915 1.34788 1.14407 1.95245 1.22216 0.96540 0.82345 0.96217 1.21920 0.98924 0.93857 1.01736 1.21513 1.00835 0.94911 0.83253 1.48320 1.53645 1.18154 1.14603 1.21304 0.78244 0.80497 0.90203 1.90691 1.41119 1.51812 1.62660 1.21871 1.05033 0.97524 0.92104 1.22239 0.94634 0.96826 0.98563 0.90677 1.23022 0.98045 1.03658 0.93344 1.23678 0.86543 1.02692 0.91444 1.89115 1.51426 1.61668 1.30623 1.23467 0.95427 0.93401 0.90226 1.22067 0.94312 0.87363 0.97451 1.22495 1.02152 0.97751 0.96979 0.93958 0.79593 0.95590 0.95341 0.92352 0.92560 0.92065 0.91601 0.90390 0.92561 0.89950 0.90157 0.89481 0.85135 0.86566 0.87414 0.89855 0.91200 0.88122 0.90739 0.92327 0.88819 0.86518 0.91916 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 3 Si 0.98 45.95 29.55 68.60 2.03 47.97 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.25 -14.10 9.99 84.04 0.84 -13.26 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.75 -38.96 5.60 -343.45 -1.92 -40.89 16 10 C 0.16 6.09 6.26 86.38 0.54 6.63 16 11 C -0.11 -3.73 5.70 30.60 0.17 -3.56 16 12 C 0.08 1.87 5.75 71.98 0.41 2.28 16 13 O -0.40 -9.87 9.99 -148.98 -1.49 -11.35 16 14 C 0.08 1.39 2.57 30.62 0.08 1.46 16 15 C -0.13 -2.11 5.73 30.67 0.18 -1.94 16 16 C 0.12 1.71 6.43 86.36 0.56 2.26 16 17 N -0.61 -7.75 2.97 -818.07 -2.43 -10.18 16 18 C 0.51 7.82 7.52 87.65 0.66 8.48 16 19 O -0.58 -14.07 14.44 -3.02 -0.04 -14.12 16 20 C -0.13 -0.94 3.27 29.85 0.10 -0.85 16 21 C -0.10 -1.21 2.70 -9.77 -0.03 -1.24 16 22 H 0.07 1.16 7.90 -2.39 -0.02 1.14 16 23 C -0.14 -0.98 6.74 31.61 0.21 -0.77 16 24 C 0.03 0.35 7.63 72.48 0.55 0.90 16 25 O -0.41 -8.00 11.65 -148.98 -1.74 -9.74 16 26 C 0.05 0.90 6.39 72.49 0.46 1.36 16 27 C 0.11 0.74 6.37 86.51 0.55 1.29 16 28 C -0.16 -1.86 5.71 30.82 0.18 -1.69 16 29 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.37 20.75 7.67 -92.71 -0.71 20.04 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.31 8.09 -2.38 -0.02 1.29 16 36 H 0.07 1.34 7.84 -2.38 -0.02 1.32 16 37 H 0.08 1.04 7.79 -2.39 -0.02 1.02 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.08 1.48 7.01 -2.39 -0.02 1.46 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.13 0.20 7.93 -2.39 -0.02 0.18 16 43 H 0.12 0.49 7.53 -2.39 -0.02 0.47 16 44 H 0.11 0.16 7.73 -2.39 -0.02 0.14 16 45 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 46 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.07 1.62 7.80 -2.39 -0.02 1.61 16 49 H 0.06 0.95 7.75 -2.39 -0.02 0.93 16 50 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 51 H 0.12 0.17 5.93 -2.38 -0.01 0.16 16 52 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.09 0.95 7.84 -2.39 -0.02 0.93 16 Total: -1.00 -76.66 415.47 0.79 -75.87 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.17 Total: 25.08 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 5.93 Total: -2.68 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -4.07 Total: -111.03 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -3.27 Total: -35.21 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.66 0.79 -75.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329773823.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.421 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds