Wall clock time and date at job start Sat Apr 11 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99891 * 2 1 4 4 H 1.48502 * 109.46795 * 239.99912 * 3 2 1 5 5 H 1.48499 * 109.46677 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47184 * 119.99950 * 3 2 1 7 7 C 1.37878 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99665 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46913 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47091 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47034 * 54.99524 * 11 10 9 13 13 N 1.46902 * 109.47155 * 295.00382 * 11 10 9 14 14 C 1.50695 * 109.47364 * 175.00084 * 11 10 9 15 15 O 1.21288 * 119.99714 * 99.99734 * 14 11 10 16 16 N 1.34776 * 120.00029 * 280.00157 * 14 11 10 17 17 C 1.46928 * 120.63082 * 180.02562 * 16 14 11 18 18 C 1.53197 * 108.77335 * 233.58750 * 17 16 14 19 19 C 1.53042 * 109.30611 * 305.36158 * 18 17 16 20 20 O 1.42902 * 109.45780 * 181.38740 * 19 18 17 21 21 C 1.42898 * 114.00186 * 149.99714 * 20 19 18 22 22 C 1.52997 * 109.47319 * 180.02562 * 21 20 19 23 23 H 1.09004 * 110.33324 * 305.70237 * 22 21 20 24 24 C 1.54476 * 110.37423 * 183.45398 * 22 21 20 25 25 C 1.54509 * 104.06327 * 217.18884 * 24 22 21 26 26 C 1.54486 * 104.06437 * 0.02562 * 25 24 22 27 27 O 1.44426 * 110.37206 * 67.95288 * 22 21 20 28 28 C 1.53040 * 109.54005 * 61.36863 * 19 18 17 29 29 C 1.46919 * 120.63075 * 359.97263 * 16 14 11 30 30 H 0.97004 * 120.00390 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.46826 * 60.00710 * 9 7 2 32 32 H 1.08991 * 109.47441 * 300.00407 * 9 7 2 33 33 H 1.09002 * 109.47049 * 60.00165 * 10 9 7 34 34 H 1.09001 * 109.47222 * 300.00375 * 10 9 7 35 35 H 1.00905 * 111.00082 * 300.00046 * 13 11 10 36 36 H 1.00904 * 111.00179 * 63.94900 * 13 11 10 37 37 H 1.08994 * 109.58874 * 113.79744 * 17 16 14 38 38 H 1.08999 * 109.70224 * 353.43663 * 17 16 14 39 39 H 1.08997 * 109.49340 * 185.41210 * 18 17 16 40 40 H 1.08998 * 109.50176 * 65.31192 * 18 17 16 41 41 H 1.09003 * 109.46214 * 301.35624 * 19 18 17 42 42 H 1.09002 * 109.47259 * 300.00293 * 21 20 19 43 43 H 1.09001 * 109.47074 * 60.00315 * 21 20 19 44 44 H 1.08997 * 110.51048 * 335.82995 * 24 22 21 45 45 H 1.08998 * 110.51650 * 98.41019 * 24 22 21 46 46 H 1.09003 * 110.51397 * 118.64015 * 25 24 22 47 47 H 1.08996 * 110.51579 * 241.21972 * 25 24 22 48 48 H 1.08994 * 110.37115 * 142.80925 * 26 25 24 49 49 H 1.09003 * 110.36832 * 265.03673 * 26 25 24 50 50 H 1.09004 * 109.49663 * 58.58376 * 28 19 18 51 51 H 1.08999 * 109.49632 * 178.67806 * 28 19 18 52 52 H 1.08998 * 109.59034 * 246.20369 * 29 16 14 53 53 H 1.08996 * 109.58592 * 6.62918 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 1 0.7885 -5.0067 -0.8432 13 7 0.7282 -5.1188 1.2537 14 6 2.4551 -6.1297 -0.1250 15 8 2.7866 -6.7535 0.8610 16 7 2.9584 -6.4584 -1.3312 17 6 3.9092 -7.5703 -1.4680 18 6 5.1600 -7.0631 -2.1927 19 6 4.7501 -6.4197 -3.5194 20 8 5.9174 -5.9743 -4.2131 21 6 5.7907 -5.9939 -5.6363 22 6 7.0924 -5.5005 -6.2711 23 1 7.3625 -4.5233 -5.8707 24 6 6.9489 -5.4310 -7.8076 25 6 8.3308 -5.8785 -8.3344 26 6 9.1456 -6.1660 -7.0538 27 8 8.1559 -6.4500 -6.0400 28 6 3.8321 -5.2258 -3.2473 29 6 2.5660 -5.7125 -2.5346 30 1 -0.4851 0.8400 -0.0004 31 1 0.6241 -2.5567 -0.8904 32 1 0.6247 -2.5571 0.8896 33 1 2.8720 -3.6042 0.8895 34 1 2.8721 -3.6042 -0.8905 35 1 1.3477 -5.1033 2.0500 36 1 0.0234 -4.4008 1.3300 37 1 3.4519 -8.3730 -2.0464 38 1 4.1843 -7.9420 -0.4810 39 1 5.8324 -7.8989 -2.3859 40 1 5.6662 -6.3245 -1.5712 41 1 4.2220 -7.1519 -4.1303 42 1 5.5875 -7.0118 -5.9691 43 1 4.9699 -5.3427 -5.9370 44 1 6.1706 -6.1132 -8.1497 45 1 6.7287 -4.4118 -8.1250 46 1 8.2357 -6.7819 -8.9369 47 1 8.7951 -5.0809 -8.9143 48 1 9.7954 -7.0283 -7.2031 49 1 9.7341 -5.2921 -6.7743 50 1 4.3509 -4.5045 -2.6159 51 1 3.5596 -4.7540 -4.1913 52 1 1.9994 -6.3640 -3.1999 53 1 1.9545 -4.8562 -2.2505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332171089.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:42 Heat of formation + Delta-G solvation = -166.178380 kcal Electronic energy + Delta-G solvation = -30577.754496 eV Core-core repulsion = 26447.586202 eV Total energy + Delta-G solvation = -4130.168294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.49739 -40.48437 -39.40581 -37.42538 -37.10757 -34.87001 -33.38125 -32.98652 -32.17412 -31.69763 -31.20666 -28.35740 -26.76952 -25.96063 -25.00400 -24.09990 -22.89690 -22.37915 -22.03819 -21.59707 -19.92193 -18.97567 -18.31692 -17.88543 -17.31823 -17.17727 -16.85542 -16.62385 -16.51576 -16.23006 -16.01902 -15.67058 -15.53193 -15.12159 -15.00538 -14.69112 -14.61952 -14.45567 -14.19024 -14.02697 -13.67396 -13.46046 -13.29615 -13.21708 -12.90750 -12.67472 -12.65325 -12.62834 -12.53949 -12.32964 -12.26990 -12.07252 -11.96363 -11.82036 -11.70769 -11.49731 -11.48220 -11.32163 -10.74894 -10.71989 -10.55828 -10.42973 -9.76976 -9.63803 -8.21548 -6.31621 1.39183 1.40535 1.48432 1.55523 1.91765 2.39460 2.56281 2.94650 3.11959 3.43205 3.65263 3.69820 3.72724 3.80844 3.87831 3.99275 4.01382 4.05755 4.10167 4.16802 4.20806 4.26328 4.28806 4.36291 4.44386 4.49580 4.57465 4.59811 4.62113 4.66752 4.74962 4.80956 4.82010 4.86137 4.90151 4.94497 4.95697 5.05297 5.09241 5.11380 5.16366 5.26143 5.45890 5.52673 5.64477 5.80024 5.89420 6.03734 6.21012 6.29881 6.33152 6.46081 6.82793 7.12999 7.37225 8.88893 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008956 B = 0.002702 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.784655 B =10359.680188 C =12868.176858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.034 3.966 10 C -0.121 4.121 11 C 0.081 3.919 12 H 0.111 0.889 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.573 6.573 16 N -0.610 5.610 17 C 0.116 3.884 18 C -0.124 4.124 19 C 0.097 3.903 20 O -0.398 6.398 21 C 0.064 3.936 22 C 0.069 3.931 23 H 0.064 0.936 24 C -0.144 4.144 25 C -0.150 4.150 26 C 0.032 3.968 27 O -0.395 6.395 28 C -0.153 4.153 29 C 0.103 3.897 30 H 0.264 0.736 31 H 0.005 0.995 32 H 0.002 0.998 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.343 0.657 36 H 0.353 0.647 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.060 0.940 50 H 0.052 0.948 51 H 0.096 0.904 52 H 0.103 0.897 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.177 -14.744 -19.658 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.069 0.931 9 C -0.003 4.003 10 C -0.160 4.160 11 C -0.034 4.034 12 H 0.129 0.871 13 N -0.361 5.361 14 C 0.315 3.685 15 O -0.452 6.452 16 N -0.344 5.344 17 C -0.006 4.006 18 C -0.162 4.162 19 C 0.039 3.961 20 O -0.318 6.318 21 C -0.012 4.012 22 C 0.011 3.989 23 H 0.082 0.918 24 C -0.182 4.182 25 C -0.188 4.188 26 C -0.044 4.044 27 O -0.315 6.315 28 C -0.192 4.192 29 C -0.019 4.019 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.078 0.922 50 H 0.071 0.929 51 H 0.114 0.886 52 H 0.121 0.879 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.141 -15.790 -19.167 27.642 hybrid contribution 0.602 2.285 0.381 2.394 sum 12.743 -13.504 -18.786 26.413 Atomic orbital electron populations 1.70039 1.07369 1.27828 1.51189 1.25810 0.95708 1.02763 0.94730 0.85649 0.78448 0.78878 0.78983 1.19206 1.20656 1.19868 1.21548 0.93181 0.92486 1.51053 0.93060 1.18932 0.93853 0.91714 0.95822 1.22158 0.98838 0.93903 1.01137 1.21432 0.94796 0.91319 0.95864 0.87133 1.58781 1.18375 1.55616 1.03316 1.20780 0.81042 0.84078 0.82635 1.90605 1.61746 1.54831 1.38015 1.48175 1.45055 1.33954 1.07169 1.21623 0.88494 0.88630 1.01824 1.21910 0.97660 1.01307 0.95348 1.22072 0.85917 0.94967 0.93125 1.87972 1.37789 1.87414 1.18602 1.22770 0.96389 1.01471 0.80594 1.23138 0.87456 0.92644 0.95658 0.91758 1.22927 0.98924 1.03946 0.92410 1.22937 0.94872 1.03196 0.97771 1.23621 0.91869 1.01876 0.87047 1.89207 1.31624 1.56324 1.54325 1.22414 0.96095 0.98778 1.01880 1.21992 0.96890 0.97186 0.85835 0.92680 0.97637 0.97966 0.94209 0.91751 0.84426 0.83190 0.88623 0.90225 0.88818 0.93157 0.89517 0.91703 0.90062 0.89391 0.88822 0.89727 0.88941 0.88188 0.92188 0.92941 0.88550 0.87927 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.81 13.29 21.45 0.28 -53.52 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.03 1.66 4.74 29.85 0.14 1.80 16 10 C -0.12 -4.82 4.45 30.59 0.14 -4.68 16 11 C 0.08 2.79 2.34 44.17 0.10 2.90 16 12 H 0.11 3.50 6.80 -2.39 -0.02 3.48 16 13 N -0.83 -29.40 8.94 -171.81 -1.54 -30.93 16 14 C 0.53 17.95 6.95 87.66 0.61 18.56 16 15 O -0.57 -23.17 15.67 -3.05 -0.05 -23.22 16 16 N -0.61 -16.14 2.97 -818.85 -2.43 -18.57 16 17 C 0.12 2.60 6.43 86.36 0.56 3.16 16 18 C -0.12 -2.66 5.73 30.67 0.18 -2.48 16 19 C 0.10 1.87 2.57 30.62 0.08 1.95 16 20 O -0.40 -9.12 9.99 -148.60 -1.48 -10.61 16 21 C 0.06 1.06 5.35 71.98 0.39 1.45 16 22 C 0.07 1.17 3.57 31.09 0.11 1.28 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 C -0.14 -1.50 6.63 31.61 0.21 -1.29 16 25 C -0.15 -1.38 7.09 31.61 0.22 -1.16 16 26 C 0.03 0.44 7.63 72.49 0.55 1.00 16 27 O -0.39 -8.43 11.35 -148.60 -1.69 -10.12 16 28 C -0.15 -3.20 5.70 30.68 0.17 -3.03 16 29 C 0.10 2.19 5.76 86.38 0.50 2.69 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 2.47 6.97 -2.39 -0.02 2.45 16 35 H 0.34 12.51 8.58 -89.69 -0.77 11.74 16 36 H 0.35 12.51 7.55 -89.69 -0.68 11.83 16 37 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 2.10 7.01 -2.39 -0.02 2.08 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.25 7.79 -2.39 -0.02 1.23 16 42 H 0.06 0.95 8.08 -2.39 -0.02 0.93 16 43 H 0.08 1.03 7.84 -2.39 -0.02 1.01 16 44 H 0.09 0.74 7.87 -2.39 -0.02 0.72 16 45 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.10 1.65 7.84 -2.39 -0.02 1.63 16 52 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 53 H 0.09 2.14 4.83 -2.39 -0.01 2.13 16 Total: -1.00 -71.21 412.51 -0.77 -71.98 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -0.54 Total: 36.21 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 4.65 Total: -6.63 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.68 Total: -103.02 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -3.22 Total: -43.94 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -71.21 -0.77 -71.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332171089.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.196 kcal (2) G-P(sol) polarization free energy of solvation -71.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds