Wall clock time and date at job start Sat Apr 11 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00044 * 2 1 4 4 H 1.48496 * 109.47743 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46989 * 299.99989 * 3 2 1 6 6 H 1.48503 * 109.46965 * 59.99601 * 3 2 1 7 7 C 1.37879 * 120.00435 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00007 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99578 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47084 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46961 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47216 * 55.00203 * 12 11 10 14 14 N 1.46894 * 109.47134 * 295.00075 * 12 11 10 15 15 C 1.50698 * 109.47454 * 174.99958 * 12 11 10 16 16 O 1.21285 * 120.00409 * 99.99765 * 15 12 11 17 17 N 1.34781 * 120.00183 * 280.00037 * 15 12 11 18 18 C 1.47151 * 120.98010 * 5.35060 * 17 15 12 19 19 C 1.53301 * 108.38230 * 230.55663 * 18 17 15 20 20 O 1.42961 * 109.21974 * 307.69708 * 19 18 17 21 21 C 1.42959 * 114.17013 * 62.57803 * 20 19 18 22 22 C 1.47148 * 120.98226 * 185.36557 * 17 15 12 23 23 H 1.09001 * 109.71398 * 249.18249 * 22 17 15 24 24 C 1.52995 * 109.68447 * 9.72326 * 22 17 15 25 25 C 1.53004 * 109.47366 * 178.31085 * 24 22 17 26 26 H 1.08999 * 110.80189 * 43.53405 * 25 24 22 27 27 C 1.54811 * 110.90413 * 167.16604 * 25 24 22 28 28 C 1.54101 * 104.18732 * 139.08119 * 27 25 24 29 29 O 1.43746 * 107.42042 * 1.95082 * 28 27 25 30 30 C 1.44580 * 106.86922 * 333.67228 * 29 28 27 31 31 H 0.97001 * 120.00199 * 0.02562 * 1 2 3 32 32 H 1.09000 * 109.47272 * 60.00081 * 9 7 2 33 33 H 1.08999 * 109.47379 * 299.99213 * 9 7 2 34 34 H 1.09000 * 109.46644 * 60.00107 * 10 9 7 35 35 H 1.08991 * 109.47028 * 300.00108 * 10 9 7 36 36 H 1.08997 * 109.47533 * 59.99955 * 11 10 9 37 37 H 1.09005 * 109.47527 * 300.00133 * 11 10 9 38 38 H 1.00906 * 111.00467 * 299.99601 * 14 12 11 39 39 H 1.00897 * 111.00177 * 63.95430 * 14 12 11 40 40 H 1.08994 * 109.68691 * 110.83241 * 18 17 15 41 41 H 1.08998 * 109.71153 * 350.29311 * 18 17 15 42 42 H 1.08997 * 109.51223 * 187.77536 * 19 18 17 43 43 H 1.09001 * 109.51230 * 67.61787 * 19 18 17 44 44 H 1.09000 * 109.51350 * 177.49188 * 21 20 19 45 45 H 1.09004 * 109.50980 * 57.34272 * 21 20 19 46 46 H 1.09008 * 109.47306 * 58.31083 * 24 22 17 47 47 H 1.09001 * 109.47152 * 298.31114 * 24 22 17 48 48 H 1.08990 * 110.49400 * 20.39958 * 27 25 24 49 49 H 1.09007 * 110.59803 * 257.80450 * 27 25 24 50 50 H 1.08995 * 109.88158 * 121.44888 * 28 27 25 51 51 H 1.08997 * 109.88052 * 242.45151 * 28 27 25 52 52 H 1.09005 * 110.50311 * 281.38250 * 30 29 28 53 53 H 1.09002 * 110.77459 * 158.51091 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4747 -6.1499 0.0018 13 1 3.1588 -6.0426 0.8436 14 7 3.2378 -6.1424 -1.2533 15 6 1.7254 -7.4515 0.1263 16 8 1.5131 -8.1258 -0.8593 17 7 1.2911 -7.8664 1.3329 18 6 1.4328 -7.0132 2.5234 19 6 2.0851 -7.8411 3.6366 20 8 1.3525 -9.0564 3.8100 21 6 1.3511 -9.9080 2.6618 22 6 0.6614 -9.1860 1.4986 23 1 -0.3986 -9.0623 1.7202 24 6 0.8278 -10.0013 0.2147 25 6 0.2085 -11.3872 0.4068 26 1 -0.7546 -11.3142 0.9118 27 6 0.0676 -12.1218 -0.9486 28 6 0.4765 -13.5742 -0.6353 29 8 0.7670 -13.6457 0.7707 30 6 1.1719 -12.3206 1.1834 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5571 -0.8897 33 1 0.6242 -2.5567 0.8903 34 1 2.8720 -3.6043 0.8906 35 1 2.8720 -3.6043 -0.8894 36 1 0.8535 -5.0451 -0.8885 37 1 0.8540 -5.0446 0.8914 38 1 2.6257 -6.2407 -2.0494 39 1 3.7995 -5.3077 -1.3300 40 1 0.4507 -6.6702 2.8484 41 1 2.0619 -6.1548 2.2877 42 1 2.0737 -7.2733 4.5669 43 1 3.1144 -8.0725 3.3628 44 1 0.8119 -10.8272 2.8908 45 1 2.3779 -10.1469 2.3844 46 1 1.8883 -10.1058 -0.0145 47 1 0.3269 -9.4903 -0.6076 48 1 0.7389 -11.6878 -1.6895 49 1 -0.9634 -12.0833 -1.3004 50 1 -0.3425 -14.2507 -0.8794 51 1 1.3625 -13.8422 -1.2109 52 1 2.2059 -12.1303 0.8956 53 1 1.0445 -12.1947 2.2586 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341471752.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:14 Heat of formation + Delta-G solvation = -145.179124 kcal Electronic energy + Delta-G solvation = -31252.859395 eV Core-core repulsion = 27123.601697 eV Total energy + Delta-G solvation = -4129.257698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.00082 -40.36294 -39.45655 -37.61685 -36.07817 -35.53328 -35.02631 -33.00607 -32.37647 -30.33006 -29.68262 -28.78060 -27.56702 -26.75199 -24.46046 -24.26040 -23.21861 -22.53945 -21.72132 -21.49333 -20.11229 -18.63670 -18.46364 -17.89553 -17.30519 -17.12494 -16.87879 -16.54552 -16.51068 -16.29662 -16.16602 -15.79273 -15.74854 -15.43620 -15.22850 -14.81074 -14.60210 -14.36904 -14.28972 -14.10147 -13.77422 -13.59776 -13.36589 -13.18524 -12.92694 -12.79069 -12.59250 -12.47948 -12.38306 -12.38058 -12.30195 -12.14402 -11.75619 -11.64968 -11.51448 -11.47729 -11.41190 -11.23774 -11.17469 -10.66807 -10.57436 -10.17049 -9.63222 -9.56613 -8.21131 -6.32123 1.39488 1.40492 1.51909 1.53282 1.73380 2.40049 2.71833 3.05226 3.12633 3.30541 3.55986 3.59388 3.64485 3.77108 3.84640 3.92580 3.93334 4.01101 4.04485 4.07725 4.18034 4.19963 4.26539 4.35599 4.37358 4.47239 4.52810 4.55061 4.59190 4.73011 4.74893 4.80158 4.83724 4.87833 4.88591 4.96852 4.99746 5.03761 5.16475 5.20662 5.22449 5.29177 5.51501 5.54313 5.71891 5.84474 5.86329 6.00721 6.07652 6.22996 6.29042 6.46623 6.86244 7.11525 7.37818 8.90596 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020467 B = 0.002211 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.757461 B =12659.389976 C =13349.957306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.093 4.093 11 C -0.135 4.135 12 C 0.083 3.917 13 H 0.118 0.882 14 N -0.830 5.830 15 C 0.526 3.474 16 O -0.549 6.549 17 N -0.613 5.613 18 C 0.063 3.937 19 C 0.046 3.954 20 O -0.390 6.390 21 C 0.047 3.953 22 C 0.110 3.890 23 H 0.081 0.919 24 C -0.088 4.088 25 C -0.124 4.124 26 H 0.093 0.907 27 C -0.148 4.148 28 C 0.043 3.957 29 O -0.401 6.401 30 C 0.041 3.959 31 H 0.262 0.738 32 H -0.017 1.017 33 H -0.008 1.008 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.345 0.655 39 H 0.356 0.644 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.063 0.937 44 H 0.126 0.874 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.085 0.915 48 H 0.072 0.928 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.061 0.939 52 H 0.060 0.940 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.537 -24.217 5.343 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.175 4.175 12 C -0.033 4.033 13 H 0.135 0.865 14 N -0.362 5.362 15 C 0.314 3.686 16 O -0.427 6.427 17 N -0.347 5.347 18 C -0.060 4.060 19 C -0.031 4.031 20 O -0.309 6.309 21 C -0.030 4.030 22 C 0.007 3.993 23 H 0.099 0.901 24 C -0.125 4.125 25 C -0.143 4.143 26 H 0.112 0.888 27 C -0.186 4.186 28 C -0.033 4.033 29 O -0.320 6.320 30 C -0.035 4.035 31 H 0.071 0.929 32 H 0.001 0.999 33 H 0.011 0.989 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.172 0.828 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.147 0.853 43 H 0.082 0.918 44 H 0.144 0.856 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.103 0.897 48 H 0.091 0.909 49 H 0.104 0.896 50 H 0.112 0.888 51 H 0.079 0.921 52 H 0.078 0.922 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.556 -25.363 5.393 26.172 hybrid contribution -0.522 2.393 -0.859 2.595 sum 3.034 -22.970 4.534 23.609 Atomic orbital electron populations 1.70103 1.07852 1.27633 1.51935 1.25992 0.95725 1.03437 0.94914 0.85428 0.79262 0.78922 0.77615 1.18289 1.20787 1.20475 1.21746 0.93661 0.92244 1.50020 0.91811 1.18998 0.94457 0.93296 0.94549 1.21424 0.97891 0.92433 1.01350 1.22257 0.98362 0.94600 1.02273 1.21421 0.95112 0.90469 0.96251 0.86486 1.58715 1.28050 1.46285 1.03171 1.20768 0.78191 0.87142 0.82455 1.90644 1.57392 1.56607 1.38086 1.48216 1.60355 1.17959 1.08203 1.22755 1.03473 0.94515 0.85235 1.23152 0.94707 0.85435 0.99771 1.87976 1.74545 1.31712 1.36627 1.23544 1.00842 0.93701 0.84940 1.22120 0.97614 0.82490 0.97049 0.90134 1.21881 1.01458 0.92903 0.96298 1.22874 1.00157 0.94735 0.96543 0.88832 1.22939 1.03305 0.94802 0.97567 1.23265 1.00918 0.97158 0.81995 1.88884 1.88014 1.30582 1.24563 1.24199 0.97547 0.81103 1.00644 0.92885 0.99887 0.98911 0.91628 0.92640 0.93453 0.91199 0.84114 0.82805 0.89960 0.87381 0.85306 0.91837 0.85648 0.92258 0.92401 0.89716 0.90949 0.89620 0.88756 0.92113 0.92151 0.87158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.33 4.92 30.60 0.15 -3.18 16 11 C -0.14 -4.03 4.56 30.59 0.14 -3.89 16 12 C 0.08 2.05 2.35 44.17 0.10 2.15 16 13 H 0.12 2.48 6.78 -2.39 -0.02 2.46 16 14 N -0.83 -21.09 8.94 -171.82 -1.54 -22.62 16 15 C 0.53 13.72 6.79 87.66 0.59 14.32 16 16 O -0.55 -16.90 12.00 -3.05 -0.04 -16.94 16 17 N -0.61 -13.06 3.02 -793.53 -2.40 -15.45 16 18 C 0.06 1.09 5.68 86.36 0.49 1.58 16 19 C 0.05 0.67 6.99 72.08 0.50 1.17 16 20 O -0.39 -6.93 10.74 -148.98 -1.60 -8.53 16 21 C 0.05 0.73 4.84 72.08 0.35 1.08 16 22 C 0.11 2.09 3.18 44.97 0.14 2.23 16 23 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 24 C -0.09 -1.76 2.80 30.59 0.09 -1.67 16 25 C -0.12 -1.97 2.82 -9.49 -0.03 -1.99 16 26 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 27 C -0.15 -2.31 6.58 31.58 0.21 -2.10 16 28 C 0.04 0.66 7.69 72.35 0.56 1.22 16 29 O -0.40 -7.80 11.54 -148.98 -1.72 -9.52 16 30 C 0.04 0.63 5.79 72.66 0.42 1.05 16 31 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 32 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.91 6.87 -2.39 -0.02 1.89 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 2.03 6.87 -2.38 -0.02 2.01 16 38 H 0.35 9.35 8.58 -89.69 -0.77 8.58 16 39 H 0.36 8.38 7.55 -89.70 -0.68 7.71 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.11 1.76 5.16 -2.39 -0.01 1.75 16 42 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.13 1.53 5.09 -2.39 -0.01 1.52 16 45 H 0.06 0.91 8.05 -2.39 -0.02 0.90 16 46 H 0.06 1.34 7.14 -2.38 -0.02 1.32 16 47 H 0.08 2.18 6.04 -2.39 -0.01 2.16 16 48 H 0.07 1.25 7.86 -2.39 -0.02 1.23 16 49 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 50 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.06 0.95 7.82 -2.38 -0.02 0.93 16 53 H 0.11 1.36 5.44 -2.39 -0.01 1.34 16 Total: -1.00 -68.66 397.84 -0.94 -69.60 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.53 Total: 29.56 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 4.56 Total: -15.51 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -3.65 Total: -93.80 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -3.36 Total: -34.98 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -68.66 -0.94 -69.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341471752.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.583 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds