Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99970 * 2 1 4 4 H 1.48500 * 109.47157 * 89.99474 * 3 2 1 5 5 H 1.48494 * 109.47288 * 209.99695 * 3 2 1 6 6 H 1.48502 * 109.47015 * 329.99782 * 3 2 1 7 7 C 1.37877 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99723 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00606 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47326 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47115 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47010 * 180.02562 * 11 10 9 13 13 H 1.08995 * 109.47203 * 55.00487 * 12 11 10 14 14 N 1.46894 * 109.47058 * 294.99858 * 12 11 10 15 15 C 1.50709 * 109.47027 * 175.00177 * 12 11 10 16 16 O 1.21277 * 120.00066 * 100.00009 * 15 12 11 17 17 N 1.34777 * 119.99646 * 279.99920 * 15 12 11 18 18 C 1.47146 * 120.98422 * 354.73896 * 17 15 12 19 19 C 1.53719 * 108.16378 * 129.43372 * 18 17 15 20 20 O 1.42964 * 109.14500 * 52.53551 * 19 18 17 21 21 C 1.42957 * 114.16681 * 297.29258 * 20 19 18 22 22 C 1.47149 * 120.98022 * 175.02026 * 17 15 12 23 23 H 1.08999 * 109.68509 * 110.78520 * 22 17 15 24 24 C 1.53000 * 109.68220 * 350.23945 * 22 17 15 25 25 C 1.53001 * 109.47314 * 182.80062 * 24 22 17 26 26 H 1.08997 * 110.45883 * 53.39024 * 25 24 22 27 27 C 1.54507 * 110.51343 * 176.00040 * 25 24 22 28 28 C 1.54474 * 104.06965 * 118.64367 * 27 25 24 29 29 O 1.44434 * 104.79939 * 23.97405 * 28 27 25 30 30 C 1.44645 * 105.36903 * 319.57131 * 29 28 27 31 31 H 0.96999 * 120.00095 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47377 * 299.99768 * 9 7 2 33 33 H 1.09007 * 109.46835 * 59.99638 * 9 7 2 34 34 H 1.09000 * 109.47863 * 300.00132 * 10 9 7 35 35 H 1.09007 * 109.46957 * 60.00327 * 10 9 7 36 36 H 1.09006 * 109.47425 * 300.00053 * 11 10 9 37 37 H 1.08995 * 109.47136 * 60.00622 * 11 10 9 38 38 H 1.00900 * 111.00751 * 300.00119 * 14 12 11 39 39 H 1.00903 * 111.00141 * 63.95461 * 14 12 11 40 40 H 1.08995 * 109.68357 * 249.20932 * 18 17 15 41 41 H 1.09004 * 109.68629 * 9.76438 * 18 17 15 42 42 H 1.09007 * 109.65368 * 292.57195 * 19 18 17 43 43 H 1.08993 * 109.48705 * 172.40103 * 19 18 17 44 44 H 1.09007 * 109.51451 * 302.65401 * 21 20 19 45 45 H 1.09001 * 109.55377 * 182.53297 * 21 20 19 46 46 H 1.09007 * 109.47189 * 302.79496 * 24 22 17 47 47 H 1.08996 * 109.47580 * 62.79397 * 24 22 17 48 48 H 1.09004 * 110.51149 * 237.29285 * 27 25 24 49 49 H 1.09006 * 110.51104 * 359.97438 * 27 25 24 50 50 H 1.08991 * 110.37724 * 142.80521 * 28 27 25 51 51 H 1.09006 * 110.36943 * 265.04080 * 28 27 25 52 52 H 1.09004 * 110.33914 * 281.58860 * 30 29 28 53 53 H 1.09000 * 110.50368 * 159.18856 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5467 1.4402 -0.6999 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 1 3.1586 -6.0427 0.8436 14 7 3.2377 -6.1425 -1.2533 15 6 1.7252 -7.4516 0.1263 16 8 1.5130 -8.1258 -0.8593 17 7 1.2909 -7.8664 1.3328 18 6 1.6342 -7.1259 2.5571 19 6 0.3375 -6.8704 3.3422 20 8 -0.3531 -8.1091 3.5226 21 6 -0.7708 -8.7292 2.3041 22 6 0.4644 -9.0766 1.4654 23 1 1.0371 -9.8597 1.9622 24 6 0.0280 -9.5569 0.0798 25 6 -0.8878 -10.7737 0.2268 26 1 -1.7129 -10.5501 0.9030 27 6 -1.4234 -11.2181 -1.1526 28 6 -0.8837 -12.6558 -1.3197 29 8 -0.6549 -13.1229 0.0278 30 6 -0.0884 -11.9946 0.7336 31 1 -0.4850 -0.8400 0.0004 32 1 0.6241 -2.5568 0.8903 33 1 0.6247 -2.5571 -0.8897 34 1 2.8720 -3.6044 -0.8894 35 1 2.8719 -3.6043 0.8906 36 1 0.8539 -5.0446 0.8914 37 1 0.8535 -5.0451 -0.8886 38 1 2.6256 -6.2407 -2.0494 39 1 3.7994 -5.3077 -1.3300 40 1 2.3226 -7.7158 3.1621 41 1 2.0983 -6.1755 2.2935 42 1 -0.2960 -6.1776 2.7882 43 1 0.5798 -6.4435 4.3153 44 1 -1.4084 -8.0432 1.7464 45 1 -1.3256 -9.6399 2.5297 46 1 -0.5097 -8.7570 -0.4294 47 1 0.9070 -9.8320 -0.5030 48 1 -2.5134 -11.2163 -1.1578 49 1 -1.0361 -10.5706 -1.9394 50 1 -1.6225 -13.2830 -1.8184 51 1 0.0491 -12.6478 -1.8837 52 1 0.9678 -11.8853 0.4876 53 1 -0.2180 -12.1131 1.8094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341471753.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -155.297510 kcal Electronic energy + Delta-G solvation = -31458.601191 eV Core-core repulsion = 27328.904727 eV Total energy + Delta-G solvation = -4129.696464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.03041 -40.34769 -39.51090 -37.75065 -36.13643 -35.75796 -35.12334 -32.94279 -32.31013 -30.37132 -29.57066 -28.77065 -27.11612 -26.62718 -24.75774 -24.27549 -23.59842 -22.72124 -22.01618 -21.24444 -20.05101 -18.92792 -18.56857 -17.83894 -17.36730 -17.11123 -16.87487 -16.65942 -16.46116 -16.26631 -16.00181 -15.79659 -15.67647 -15.47495 -15.26134 -15.06233 -14.91001 -14.54107 -14.28175 -13.96699 -13.87365 -13.68140 -13.45411 -13.31542 -12.84795 -12.77447 -12.63818 -12.50075 -12.45417 -12.33140 -12.17233 -11.98030 -11.81033 -11.77661 -11.67368 -11.63973 -11.50544 -11.27532 -10.80244 -10.73104 -10.56500 -10.20395 -9.73238 -9.57880 -8.70139 -6.41426 1.46314 1.51965 1.60589 1.69746 1.77869 2.55301 2.73152 3.00227 3.14372 3.25699 3.49249 3.56507 3.64388 3.73649 3.82102 3.84742 3.91502 3.96515 3.96733 4.03180 4.12733 4.18485 4.22818 4.26641 4.37932 4.39492 4.41814 4.55570 4.57133 4.60238 4.72645 4.76254 4.78139 4.80521 4.82210 4.86120 4.96071 4.97524 4.99151 5.01490 5.14396 5.25375 5.38594 5.47445 5.50501 5.79245 5.94386 5.97926 6.01182 6.17542 6.24243 6.39538 6.56119 7.06496 7.41068 8.70427 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.002364 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.571695 B =11840.422872 C =12359.043731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.042 4.042 3 Si 1.118 2.882 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.286 1.286 7 C -0.616 4.616 8 H 0.054 0.946 9 C 0.009 3.991 10 C -0.087 4.087 11 C -0.132 4.132 12 C 0.081 3.919 13 H 0.118 0.882 14 N -0.830 5.830 15 C 0.526 3.474 16 O -0.549 6.549 17 N -0.614 5.614 18 C 0.066 3.934 19 C 0.043 3.957 20 O -0.387 6.387 21 C 0.051 3.949 22 C 0.113 3.887 23 H 0.090 0.910 24 C -0.088 4.088 25 C -0.126 4.126 26 H 0.094 0.906 27 C -0.149 4.149 28 C 0.042 3.958 29 O -0.399 6.399 30 C 0.048 3.952 31 H 0.254 0.746 32 H -0.010 1.010 33 H -0.020 1.020 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.346 0.654 39 H 0.356 0.644 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.047 0.953 43 H 0.130 0.870 44 H 0.047 0.953 45 H 0.126 0.874 46 H 0.051 0.949 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.073 0.927 50 H 0.104 0.896 51 H 0.058 0.942 52 H 0.056 0.944 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -22.937 5.027 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.939 3.061 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.212 1.212 7 C -0.654 4.654 8 H 0.073 0.927 9 C -0.028 4.028 10 C -0.125 4.125 11 C -0.172 4.172 12 C -0.034 4.034 13 H 0.135 0.865 14 N -0.362 5.362 15 C 0.314 3.686 16 O -0.426 6.426 17 N -0.348 5.348 18 C -0.056 4.056 19 C -0.034 4.034 20 O -0.305 6.305 21 C -0.027 4.027 22 C 0.010 3.990 23 H 0.108 0.892 24 C -0.125 4.125 25 C -0.145 4.145 26 H 0.113 0.887 27 C -0.187 4.187 28 C -0.035 4.035 29 O -0.318 6.318 30 C -0.029 4.029 31 H 0.064 0.936 32 H 0.008 0.992 33 H -0.002 1.002 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.159 0.841 39 H 0.171 0.829 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.065 0.935 43 H 0.148 0.852 44 H 0.066 0.934 45 H 0.144 0.856 46 H 0.070 0.930 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.092 0.908 50 H 0.122 0.878 51 H 0.076 0.924 52 H 0.075 0.925 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.996 -22.626 5.042 23.202 hybrid contribution -0.653 -0.174 -0.783 1.034 sum 0.343 -22.800 4.259 23.197 Atomic orbital electron populations 1.70903 1.08075 1.29823 1.49030 1.27437 0.96597 1.07026 0.92843 0.82919 0.74219 0.71027 0.77892 1.19601 1.19224 1.21182 1.22534 0.94830 0.93342 1.54692 0.92743 1.19163 0.95123 0.94710 0.93822 1.21314 0.97660 0.92103 1.01413 1.22231 0.98351 0.94533 1.02125 1.21434 0.95153 0.90483 0.96312 0.86464 1.58708 1.28045 1.46272 1.03169 1.20719 0.78378 0.86937 0.82536 1.90655 1.57405 1.56222 1.38354 1.48237 1.52270 1.27610 1.06706 1.22812 0.98615 0.98628 0.85523 1.23204 0.91891 0.85802 1.02513 1.87960 1.75614 1.37032 1.29902 1.23211 0.94664 0.99230 0.85555 1.22090 0.92393 0.86719 0.97778 0.89197 1.21942 0.99850 0.96236 0.94501 1.22741 0.98722 0.95247 0.97768 0.88744 1.22965 1.02026 0.96591 0.97090 1.23518 1.00673 0.94850 0.84427 1.89111 1.83568 1.35733 1.23394 1.23659 0.96688 0.84284 0.98222 0.93610 0.99203 1.00191 0.92655 0.91670 0.91336 0.93410 0.84104 0.82863 0.88365 0.87698 0.93458 0.85234 0.93421 0.85595 0.92979 0.89868 0.89745 0.90817 0.87798 0.92369 0.92534 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.65 21.45 0.29 -57.54 16 2 C -0.04 -2.39 5.46 84.65 0.46 -1.92 16 3 Si 1.12 49.14 29.90 68.60 2.05 51.19 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.62 -33.94 9.11 25.60 0.23 -33.70 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.01 0.44 4.28 29.84 0.13 0.56 16 10 C -0.09 -3.13 4.92 30.59 0.15 -2.98 16 11 C -0.13 -3.91 4.59 30.60 0.14 -3.77 16 12 C 0.08 2.02 2.35 44.17 0.10 2.12 16 13 H 0.12 2.50 6.63 -2.39 -0.02 2.49 16 14 N -0.83 -21.26 8.94 -171.80 -1.54 -22.80 16 15 C 0.53 13.63 6.77 87.66 0.59 14.22 16 16 O -0.55 -16.81 11.99 -3.02 -0.04 -16.85 16 17 N -0.61 -12.84 3.01 -792.73 -2.39 -15.23 16 18 C 0.07 1.10 6.14 86.50 0.53 1.63 16 19 C 0.04 0.73 7.00 72.22 0.51 1.24 16 20 O -0.39 -7.40 10.74 -148.98 -1.60 -9.00 16 21 C 0.05 0.86 5.65 72.08 0.41 1.27 16 22 C 0.11 2.09 3.06 44.96 0.14 2.23 16 23 H 0.09 1.51 7.67 -2.39 -0.02 1.49 16 24 C -0.09 -1.78 2.43 30.59 0.07 -1.70 16 25 C -0.13 -2.01 2.87 -9.78 -0.03 -2.04 16 26 H 0.09 1.28 6.32 -2.39 -0.02 1.26 16 27 C -0.15 -2.39 6.73 31.61 0.21 -2.18 16 28 C 0.04 0.68 7.64 72.48 0.55 1.24 16 29 O -0.40 -8.08 11.65 -148.98 -1.74 -9.82 16 30 C 0.05 0.78 6.52 72.48 0.47 1.26 16 31 H 0.25 15.83 7.22 -92.71 -0.67 15.16 16 32 H -0.01 -0.54 8.01 -2.39 -0.02 -0.56 16 33 H -0.02 -1.09 8.01 -2.38 -0.02 -1.11 16 34 H 0.05 1.94 6.87 -2.39 -0.02 1.92 16 35 H 0.06 2.19 8.14 -2.38 -0.02 2.18 16 36 H 0.07 1.96 7.34 -2.38 -0.02 1.94 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.35 9.38 8.58 -89.69 -0.77 8.61 16 39 H 0.36 8.51 7.55 -89.69 -0.68 7.83 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.10 1.68 5.10 -2.39 -0.01 1.67 16 42 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 45 H 0.13 1.59 6.75 -2.39 -0.02 1.57 16 46 H 0.05 1.29 7.39 -2.38 -0.02 1.27 16 47 H 0.08 2.10 6.02 -2.39 -0.01 2.09 16 48 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 49 H 0.07 1.31 7.73 -2.38 -0.02 1.29 16 50 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.06 0.98 7.76 -2.39 -0.02 0.96 16 53 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -70.22 400.86 -0.71 -70.93 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: -0.43 Total: 31.63 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.68 Total: -22.52 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -3.63 Total: -95.56 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -3.37 Total: -35.66 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.05 Total: 51.19 kcal Total: -70.22 -0.71 -70.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341471753.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.372 kcal (2) G-P(sol) polarization free energy of solvation -70.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds