Wall clock time and date at job start Sat Apr 11 2020 06:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99959 * 2 1 4 4 C 1.53001 * 109.47173 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47122 * 179.97438 * 4 3 2 6 6 C 1.36735 * 127.13628 * 90.02183 * 5 4 3 7 7 C 1.50703 * 126.34835 * 0.02562 * 6 5 4 8 8 C 1.53000 * 109.46912 * 269.70868 * 7 6 5 9 9 C 1.52997 * 109.47060 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47466 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46756 * 59.99920 * 14 12 10 16 16 H 1.48490 * 109.47381 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47117 * 300.00527 * 14 12 10 18 18 N 1.30301 * 107.30581 * 179.75624 * 6 5 4 19 19 N 1.28527 * 110.05285 * 0.24500 * 18 6 5 20 20 C 1.31222 * 109.85896 * 359.97438 * 19 18 6 21 21 N 1.38580 * 126.47051 * 180.02562 * 20 19 18 22 22 C 1.47840 * 110.99846 * 120.87014 * 21 20 19 23 23 C 1.54911 * 104.79693 * 213.63473 * 22 21 20 24 24 C 1.55141 * 101.65195 * 37.06970 * 23 22 21 25 25 H 1.09002 * 110.85771 * 82.79577 * 24 23 22 26 26 C 1.52995 * 110.70680 * 205.96358 * 24 23 22 27 27 F 1.39897 * 109.47429 * 293.59961 * 26 24 23 28 28 C 1.47437 * 111.00242 * 0.02571 * 21 20 19 29 29 H 1.09003 * 109.47471 * 300.00146 * 1 2 3 30 30 H 1.08997 * 109.47383 * 60.00514 * 1 2 3 31 31 H 1.09010 * 109.47169 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47180 * 59.99441 * 3 2 1 33 33 H 1.09000 * 109.46647 * 299.99969 * 3 2 1 34 34 H 1.09003 * 109.47361 * 59.99752 * 4 3 2 35 35 H 1.08998 * 109.46739 * 299.99702 * 4 3 2 36 36 H 1.09001 * 109.46980 * 149.70996 * 7 6 5 37 37 H 1.08992 * 109.47158 * 29.71101 * 7 6 5 38 38 H 1.09002 * 109.47398 * 300.00078 * 8 7 6 39 39 H 1.09001 * 109.47194 * 60.00258 * 8 7 6 40 40 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 41 41 H 1.08998 * 109.47533 * 59.99948 * 9 8 7 42 42 H 0.97002 * 119.99731 * 180.02562 * 13 12 10 43 43 H 1.09003 * 110.37369 * 332.46371 * 22 21 20 44 44 H 1.09001 * 110.37616 * 94.80515 * 22 21 20 45 45 H 1.08997 * 110.98736 * 278.97788 * 23 22 21 46 46 H 1.09004 * 111.02118 * 155.17308 * 23 22 21 47 47 H 1.09007 * 109.46793 * 53.59807 * 26 24 23 48 48 H 1.09003 * 109.47326 * 173.59307 * 26 24 23 49 49 H 1.08998 * 109.89207 * 242.66714 * 28 21 20 50 50 H 1.09005 * 109.89317 * 3.68869 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.4670 3.2777 1.0897 7 6 4.2932 2.8868 2.5348 8 6 2.9192 3.3471 3.0259 9 6 2.7425 2.9497 4.4928 10 6 1.3890 3.4026 4.9764 11 1 0.7214 3.9216 4.3046 12 6 1.0025 3.1535 6.2762 13 7 1.8153 2.5210 7.0942 14 14 -0.6750 3.7154 6.8760 15 1 -1.7342 3.0727 6.0572 16 1 -0.8470 3.3285 8.2992 17 1 -0.7776 5.1913 6.7477 18 7 4.9704 4.3951 0.6472 19 7 4.9707 4.3998 -0.6381 20 6 4.4640 3.2762 -1.0881 21 7 4.3021 2.9196 -2.4174 22 6 5.0413 1.6771 -2.7265 23 6 5.5123 1.8512 -4.1920 24 6 5.8534 3.3640 -4.2339 25 1 6.8536 3.5474 -3.8413 26 6 5.7253 3.9082 -5.6581 27 9 6.7058 3.3272 -6.4693 28 6 4.7831 3.9873 -3.3133 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0278 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8463 -0.8900 34 1 3.8575 0.6436 -0.8891 35 1 3.8566 0.6440 0.8909 36 1 5.0707 3.3593 3.1350 37 1 4.3688 1.8036 2.6298 38 1 2.8436 4.4304 2.9309 39 1 2.1417 2.8746 2.4257 40 1 2.8180 1.8664 4.5873 41 1 3.5200 3.4218 5.0934 42 1 1.5433 2.3454 8.0085 43 1 5.8990 1.5707 -2.0623 44 1 4.3834 0.8125 -2.6395 45 1 4.7107 1.6121 -4.8907 46 1 6.3963 1.2459 -4.3930 47 1 4.7379 3.6665 -6.0519 48 1 5.8571 4.9901 -5.6469 49 1 3.9563 4.3698 -3.9117 50 1 5.2203 4.7950 -2.7262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342260630.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:40 Heat of formation + Delta-G solvation = -20.954441 kcal Electronic energy + Delta-G solvation = -30340.770394 eV Core-core repulsion = 26125.731929 eV Total energy + Delta-G solvation = -4215.038465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -47.99541 -43.03034 -39.51097 -38.16877 -35.49835 -34.83472 -33.43675 -32.26365 -30.48878 -30.02841 -29.21465 -26.91080 -26.47917 -25.99193 -23.98111 -23.65586 -22.60438 -21.49126 -20.83392 -20.53215 -19.95584 -17.86803 -16.91931 -16.67871 -16.52439 -16.31578 -16.20444 -16.05256 -15.82445 -15.61348 -14.96714 -14.76112 -14.52070 -14.24419 -13.97841 -13.91246 -13.57580 -13.44236 -13.23715 -12.55917 -12.45337 -12.35767 -12.12296 -11.95533 -11.79249 -11.63853 -11.51556 -11.47396 -11.33903 -11.10038 -10.97385 -10.88359 -10.84792 -10.61959 -10.51063 -10.18439 -9.98728 -9.78750 -9.67240 -9.43747 -9.16540 -8.37876 -8.23764 -6.03248 -4.05683 1.73709 2.06137 2.90634 3.30831 3.32804 3.35718 3.38123 3.71522 3.81918 3.94187 4.11561 4.35566 4.42502 4.55272 4.57091 4.60117 4.69301 4.74270 4.86235 4.94196 5.00311 5.04346 5.07386 5.16677 5.19788 5.23932 5.32609 5.32965 5.35579 5.38105 5.46679 5.49557 5.57172 5.59919 5.73798 5.81211 5.90661 5.98099 6.04605 6.28008 6.52547 6.59044 6.71770 6.86948 6.99563 7.09622 7.61526 7.74800 7.95567 8.37726 8.85371 9.00358 9.58407 11.07936 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.016706 B = 0.002440 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.599855 B =11474.635461 C =12413.851770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.388 6.388 3 C 0.046 3.954 4 C 0.112 3.888 5 N -0.476 5.476 6 C 0.206 3.794 7 C -0.037 4.037 8 C -0.103 4.103 9 C 0.023 3.977 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.891 3.109 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.285 5.285 19 N -0.322 5.322 20 C 0.341 3.659 21 N -0.441 5.441 22 C 0.039 3.961 23 C -0.119 4.119 24 C -0.144 4.144 25 H 0.093 0.907 26 C 0.074 3.926 27 F -0.217 7.217 28 C 0.054 3.946 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 -4.816 -24.905 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.306 6.306 3 C -0.032 4.032 4 C -0.012 4.012 5 N -0.172 5.172 6 C -0.061 4.061 7 C -0.077 4.077 8 C -0.141 4.141 9 C -0.014 4.014 10 C -0.559 4.559 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.719 3.281 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 N -0.123 5.123 19 N -0.167 5.167 20 C -0.016 4.016 21 N -0.164 5.164 22 C -0.088 4.088 23 C -0.157 4.157 24 C -0.163 4.163 25 H 0.111 0.889 26 C 0.019 3.981 27 F -0.198 7.198 28 C -0.073 4.073 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.112 0.888 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.479 -3.775 -24.826 25.702 hybrid contribution -1.113 -0.726 0.494 1.417 sum 4.366 -4.501 -24.332 25.127 Atomic orbital electron populations 1.22790 0.79894 1.03008 1.00611 1.87746 1.20637 1.26596 1.95628 1.22804 0.92263 0.85814 1.02324 1.21633 0.93105 0.80472 1.05968 1.46026 1.48919 1.16347 1.05946 1.25333 0.99862 0.88863 0.92071 1.20394 1.02100 1.01618 0.83585 1.21701 0.91566 1.00715 1.00142 1.19090 0.97130 0.96768 0.88378 1.21154 1.01219 1.37178 0.96380 0.92865 1.25004 0.97207 0.95221 0.96904 1.69947 1.36041 1.41277 1.06067 0.86671 0.84471 0.79236 0.77714 1.20336 1.21245 1.20189 1.74029 1.18971 1.17283 1.02020 1.74419 1.20521 1.17694 1.04019 1.22617 1.00797 0.90839 0.87343 1.60320 1.53342 1.05656 0.97124 1.23277 0.96793 0.91728 0.97011 1.22766 1.02157 0.95217 0.95576 1.23035 1.01178 0.96446 0.95686 0.88852 1.21937 0.90214 0.98068 0.87892 1.92772 1.65491 1.86761 1.74766 1.22845 0.97204 0.93516 0.93765 0.93127 0.94069 0.89275 0.91260 0.92390 0.88140 0.87426 0.88297 0.90324 0.92389 0.93653 0.96461 0.96122 0.92902 0.92299 0.88822 0.89704 0.89594 0.90228 0.90216 0.89049 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -4.79 10.70 -35.23 -0.38 -5.17 16 3 C 0.05 0.56 6.26 37.16 0.23 0.79 16 4 C 0.11 1.27 6.27 -4.04 -0.03 1.24 16 5 N -0.48 -6.61 2.81 -114.08 -0.32 -6.93 16 6 C 0.21 3.39 7.32 -154.01 -1.13 2.26 16 7 C -0.04 -0.61 5.59 -27.88 -0.16 -0.77 16 8 C -0.10 -2.04 5.14 -26.73 -0.14 -2.18 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 14 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 N -0.29 -5.26 12.18 32.99 0.40 -4.86 16 19 N -0.32 -5.43 10.47 30.32 0.32 -5.12 16 20 C 0.34 4.78 6.98 -318.87 -2.23 2.55 16 21 N -0.44 -4.68 5.22 -171.31 -0.89 -5.58 16 22 C 0.04 0.31 5.50 -2.30 -0.01 0.30 16 23 C -0.12 -0.76 6.44 -24.59 -0.16 -0.92 16 24 C -0.14 -0.99 3.30 -88.80 -0.29 -1.29 16 25 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 26 C 0.07 0.43 6.81 37.16 0.25 0.68 16 27 F -0.22 -1.83 17.26 2.25 0.04 -1.79 16 28 C 0.05 0.48 6.42 -2.84 -0.02 0.46 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 32 H 0.07 0.99 6.27 -51.93 -0.33 0.67 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.93 5.42 -51.93 -0.28 0.65 16 35 H 0.11 1.18 7.25 -51.93 -0.38 0.80 16 36 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 37 H 0.08 1.16 7.26 -51.93 -0.38 0.78 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.04 0.88 6.27 -51.93 -0.33 0.55 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 43 H 0.06 0.54 7.79 -51.93 -0.40 0.13 16 44 H 0.09 0.67 6.68 -51.93 -0.35 0.32 16 45 H 0.08 0.47 8.02 -51.93 -0.42 0.06 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.09 0.68 7.82 -51.93 -0.41 0.27 16 50 H 0.10 1.11 6.32 -51.93 -0.33 0.78 16 LS Contribution 402.17 15.07 6.06 6.06 Total: -1.00 -33.09 402.17 -10.36 -43.46 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.20 Total: -2.66 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -3.11 Total: -8.19 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.24 Total: -48.12 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.38 Total: -5.17 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.09 -10.36 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342260630.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.502 kcal (2) G-P(sol) polarization free energy of solvation -33.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds