Wall clock time and date at job start Sat Apr 11 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00261 * 2 1 4 4 H 1.48501 * 109.46756 * 269.99607 * 3 2 1 5 5 H 1.48503 * 109.47180 * 29.99766 * 3 2 1 6 6 H 1.48503 * 109.47081 * 149.99627 * 3 2 1 7 7 C 1.37880 * 119.99460 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00446 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99594 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46846 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47014 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.46884 * 305.00231 * 11 10 9 13 13 N 1.46902 * 109.47139 * 65.00130 * 11 10 9 14 14 C 1.50701 * 109.46931 * 184.99841 * 11 10 9 15 15 O 1.21283 * 120.00415 * 259.99638 * 14 11 10 16 16 N 1.34777 * 119.99899 * 80.00080 * 14 11 10 17 17 C 1.47160 * 120.98155 * 6.27137 * 16 14 11 18 18 C 1.53290 * 108.38297 * 129.44343 * 17 16 14 19 19 O 1.42964 * 109.22424 * 52.30079 * 18 17 16 20 20 C 1.42960 * 114.16966 * 297.41634 * 19 18 17 21 21 C 1.47149 * 120.98432 * 186.24823 * 16 14 11 22 22 H 1.08999 * 109.68358 * 110.79514 * 21 16 14 23 23 C 1.53004 * 109.68120 * 350.27873 * 21 16 14 24 24 C 1.53005 * 109.46673 * 77.97025 * 23 21 16 25 25 C 1.53181 * 109.53940 * 187.38621 * 24 23 21 26 26 C 1.53089 * 109.16227 * 183.15186 * 25 24 23 27 27 O 1.42903 * 109.41356 * 57.61126 * 26 25 24 28 28 C 1.42902 * 114.09767 * 298.84178 * 27 26 25 29 29 C 1.53088 * 109.41553 * 61.15667 * 28 27 26 30 30 H 0.97006 * 119.99404 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46951 * 60.00372 * 9 7 2 32 32 H 1.08993 * 109.47239 * 300.00325 * 9 7 2 33 33 H 1.08998 * 109.47184 * 60.00340 * 10 9 7 34 34 H 1.09002 * 109.47524 * 299.99926 * 10 9 7 35 35 H 1.00901 * 111.00071 * 60.00138 * 13 11 10 36 36 H 1.00895 * 110.99703 * 183.95243 * 13 11 10 37 37 H 1.08996 * 109.68141 * 249.16484 * 17 16 14 38 38 H 1.09001 * 109.68038 * 9.72197 * 17 16 14 39 39 H 1.08997 * 109.51313 * 172.22693 * 18 17 16 40 40 H 1.09007 * 109.51630 * 292.37922 * 18 17 16 41 41 H 1.09000 * 109.50989 * 302.66076 * 20 19 18 42 42 H 1.08993 * 109.51454 * 182.50493 * 20 19 18 43 43 H 1.08998 * 109.46977 * 317.97499 * 23 21 16 44 44 H 1.08995 * 109.47056 * 197.96766 * 23 21 16 45 45 H 1.09002 * 109.54354 * 307.56419 * 24 23 21 46 46 H 1.09001 * 109.52021 * 63.25490 * 25 24 23 47 47 H 1.08994 * 109.57918 * 303.08975 * 25 24 23 48 48 H 1.09007 * 109.48293 * 297.63462 * 26 25 24 49 49 H 1.08998 * 109.48334 * 177.59536 * 26 25 24 50 50 H 1.09010 * 109.47873 * 181.14058 * 28 27 26 51 51 H 1.09001 * 109.48419 * 301.17339 * 28 27 26 52 52 H 1.08998 * 109.52499 * 182.47911 * 29 28 27 53 53 H 1.09001 * 109.57056 * 62.33100 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0022 12 1 5.9154 -2.0470 -0.8390 13 7 6.0401 -2.0519 1.2581 14 6 6.0537 -4.0522 -0.1217 15 8 6.4271 -4.6517 0.8643 16 7 6.0882 -4.6518 -1.3282 17 6 5.7714 -3.9037 -2.5553 18 6 6.8967 -4.1391 -3.5692 19 8 7.1084 -5.5450 -3.7195 20 6 7.5368 -6.2034 -2.5251 21 6 6.4442 -6.0737 -1.4576 22 1 5.5666 -6.6460 -1.7583 23 6 6.9672 -6.5978 -0.1187 24 6 5.7887 -6.8631 0.8204 25 6 6.3144 -7.2104 2.2167 26 6 5.1325 -7.5508 3.1283 27 8 4.3914 -8.6329 2.5610 28 6 3.8356 -8.3489 1.2755 29 6 4.9653 -8.0405 0.2895 30 1 -0.4849 0.8401 -0.0004 31 1 3.8744 -0.6802 0.8912 32 1 3.8752 -0.6805 -0.8887 33 1 3.6584 -3.1503 -0.8893 34 1 3.6577 -3.1507 0.8907 35 1 5.7160 -2.5812 2.0537 36 1 7.0466 -1.9815 1.2565 37 1 4.8263 -4.2574 -2.9671 38 1 5.6984 -2.8401 -2.3282 39 1 6.6168 -3.7082 -4.5304 40 1 7.8131 -3.6692 -3.2118 41 1 8.4554 -5.7409 -2.1639 42 1 7.7173 -7.2576 -2.7351 43 1 7.6284 -5.8558 0.3287 44 1 7.5179 -7.5243 -0.2813 45 1 5.1609 -5.9739 0.8779 46 1 6.8552 -6.3567 2.6250 47 1 6.9834 -8.0684 2.1521 48 1 4.4856 -6.6789 3.2257 49 1 5.5034 -7.8402 4.1115 50 1 3.2721 -9.2134 0.9240 51 1 3.1718 -7.4874 1.3487 52 1 4.5415 -7.7806 -0.6805 53 1 5.6068 -8.9155 0.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343126050.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:53 Heat of formation + Delta-G solvation = -133.451822 kcal Electronic energy + Delta-G solvation = -32639.108283 eV Core-core repulsion = 28510.359120 eV Total energy + Delta-G solvation = -4128.749164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17015 -40.15999 -39.50214 -37.33769 -36.12284 -35.53576 -34.71308 -32.86249 -32.29317 -32.01035 -29.76803 -28.37529 -27.81607 -25.51452 -24.93943 -24.50247 -23.14558 -22.81375 -21.75851 -20.98745 -20.11458 -18.89053 -18.30480 -17.61945 -17.45566 -17.06863 -16.97433 -16.76820 -16.36250 -16.23736 -16.14775 -15.77739 -15.64389 -15.48751 -15.31784 -14.78381 -14.71756 -14.59106 -14.37446 -13.96882 -13.74335 -13.51824 -13.49922 -13.07966 -12.85297 -12.81471 -12.76530 -12.45917 -12.30215 -12.20231 -11.88849 -11.83226 -11.79669 -11.63138 -11.53717 -11.37199 -11.27501 -11.20602 -10.88299 -10.72489 -10.51494 -10.38524 -9.50763 -9.39628 -8.25628 -6.29077 1.38914 1.42925 1.51365 1.56368 1.86706 2.40824 2.82328 2.91226 3.11202 3.42933 3.53600 3.63711 3.80535 3.84981 3.92725 3.94774 4.00248 4.09591 4.11203 4.16758 4.23410 4.24597 4.32108 4.35220 4.50861 4.53148 4.57632 4.62545 4.69243 4.74939 4.79050 4.80305 4.82845 4.86306 4.93267 4.96485 5.09550 5.11506 5.13567 5.18056 5.27168 5.47697 5.55905 5.64102 5.66524 5.72894 6.08057 6.08971 6.20300 6.30976 6.33863 6.52767 6.79646 7.12957 7.35705 8.91391 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009754 B = 0.003836 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.796493 B = 7297.979704 C = 8889.942227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.531 4.531 8 H 0.025 0.975 9 C 0.005 3.995 10 C -0.073 4.073 11 C 0.081 3.919 12 H 0.112 0.888 13 N -0.818 5.818 14 C 0.481 3.519 15 O -0.535 6.535 16 N -0.607 5.607 17 C 0.063 3.937 18 C 0.051 3.949 19 O -0.393 6.393 20 C 0.056 3.944 21 C 0.108 3.892 22 H 0.075 0.925 23 C -0.097 4.097 24 C -0.069 4.069 25 C -0.129 4.129 26 C 0.057 3.943 27 O -0.401 6.401 28 C 0.056 3.944 29 C -0.153 4.153 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.021 0.979 33 H 0.058 0.942 34 H 0.036 0.964 35 H 0.346 0.654 36 H 0.348 0.652 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.034 0.966 49 H 0.104 0.896 50 H 0.106 0.894 51 H 0.033 0.967 52 H 0.072 0.928 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.265 -14.066 -4.613 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.192 4.192 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.168 1.168 7 C -0.569 4.569 8 H 0.044 0.956 9 C -0.033 4.033 10 C -0.112 4.112 11 C -0.034 4.034 12 H 0.130 0.870 13 N -0.347 5.347 14 C 0.269 3.731 15 O -0.414 6.414 16 N -0.341 5.341 17 C -0.059 4.059 18 C -0.027 4.027 19 O -0.311 6.311 20 C -0.021 4.021 21 C 0.005 3.995 22 H 0.093 0.907 23 C -0.134 4.134 24 C -0.088 4.088 25 C -0.167 4.167 26 C -0.019 4.019 27 O -0.320 6.320 28 C -0.020 4.020 29 C -0.190 4.190 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.094 0.906 38 H 0.124 0.876 39 H 0.145 0.855 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.139 0.861 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.053 0.947 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.052 0.948 52 H 0.090 0.910 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.858 -13.888 -4.370 24.623 hybrid contribution -0.190 0.275 0.336 0.474 sum 19.668 -13.613 -4.034 24.257 Atomic orbital electron populations 1.70090 1.08452 1.28031 1.53085 1.26004 0.95512 1.03552 0.94165 0.85646 0.79589 0.78042 0.79306 1.18779 1.21635 1.16756 1.21541 0.92542 0.92722 1.50055 0.95647 1.19347 0.92795 0.93937 0.97193 1.21173 0.91144 0.98467 1.00412 1.21684 0.96296 0.89857 0.95562 0.87027 1.59007 1.16446 1.56175 1.03107 1.22121 0.77971 0.90281 0.82732 1.90697 1.47854 1.64695 1.38135 1.48211 1.68369 1.10928 1.06626 1.22700 0.99776 0.98517 0.84928 1.23106 0.97053 0.81860 1.00639 1.87958 1.88157 1.21577 1.33450 1.23105 0.95063 0.99599 0.84340 1.22182 0.98720 0.81203 0.97409 0.90699 1.21851 0.98302 1.00861 0.92364 1.21242 0.96740 0.96203 0.94570 1.21983 0.97712 1.01392 0.95605 1.22664 0.92606 0.89274 0.97369 1.87859 1.70571 1.39722 1.33860 1.22653 0.94998 1.01204 0.83151 1.22371 0.98256 0.99459 0.98946 0.92678 0.95327 0.96054 0.92363 0.94533 0.84074 0.83824 0.90555 0.87600 0.85528 0.91852 0.92360 0.86130 0.89615 0.91195 0.92203 0.91163 0.91306 0.94732 0.87816 0.87633 0.94842 0.90979 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.26 13.96 21.45 0.30 -59.96 16 2 C 0.00 0.23 5.47 84.66 0.46 0.69 16 3 Si 0.95 44.06 27.47 68.60 1.88 45.94 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.24 -10.61 6.54 99.48 0.65 -9.96 16 7 C -0.53 -30.33 9.66 25.60 0.25 -30.08 16 8 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 9 C 0.00 0.21 3.93 29.85 0.12 0.33 16 10 C -0.07 -2.70 4.75 30.60 0.15 -2.55 16 11 C 0.08 2.24 2.36 44.17 0.10 2.34 16 12 H 0.11 2.71 6.26 -2.39 -0.01 2.69 16 13 N -0.82 -22.36 8.44 -171.79 -1.45 -23.81 16 14 C 0.48 12.15 6.12 87.66 0.54 12.69 16 15 O -0.53 -14.45 8.86 -3.04 -0.03 -14.48 16 16 N -0.61 -12.99 3.02 -793.51 -2.40 -15.38 16 17 C 0.06 1.18 6.04 86.35 0.52 1.70 16 18 C 0.05 0.75 6.98 72.08 0.50 1.26 16 19 O -0.39 -7.19 10.74 -148.98 -1.60 -8.79 16 20 C 0.06 0.88 6.22 72.08 0.45 1.33 16 21 C 0.11 2.05 3.05 44.97 0.14 2.19 16 22 H 0.08 1.52 6.22 -2.39 -0.01 1.51 16 23 C -0.10 -1.88 3.69 30.60 0.11 -1.77 16 24 C -0.07 -1.58 1.21 -10.67 -0.01 -1.60 16 25 C -0.13 -2.89 5.28 30.68 0.16 -2.73 16 26 C 0.06 1.37 6.84 72.01 0.49 1.86 16 27 O -0.40 -10.54 10.77 -148.98 -1.60 -12.14 16 28 C 0.06 1.32 6.84 72.01 0.49 1.81 16 29 C -0.15 -3.16 5.18 30.68 0.16 -3.00 16 30 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 31 H 0.03 1.32 6.81 -2.39 -0.02 1.30 16 32 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 33 H 0.06 2.11 7.69 -2.39 -0.02 2.09 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.35 9.95 8.58 -89.69 -0.77 9.18 16 36 H 0.35 7.83 9.06 -89.70 -0.81 7.02 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 1.88 5.56 -2.39 -0.01 1.87 16 39 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 1.97 5.86 -5.13 -0.03 1.94 16 44 H 0.07 1.12 8.03 -2.39 -0.02 1.10 16 45 H 0.06 1.77 5.51 -2.39 -0.01 1.76 16 46 H 0.07 1.68 7.54 -2.39 -0.02 1.66 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 48 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.10 2.09 8.14 -2.39 -0.02 2.08 16 50 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 51 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.07 1.44 6.53 -2.39 -0.02 1.42 16 53 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -69.60 392.85 -1.00 -70.60 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.74 Total: 33.56 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 4.63 Total: -15.54 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -3.55 Total: -99.16 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -3.23 Total: -35.41 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.94 kcal Total: -69.60 -1.00 -70.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343126050.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.848 kcal (2) G-P(sol) polarization free energy of solvation -69.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds