Wall clock time and date at job start Sat Apr 11 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 120.00016 * 2 1 4 4 H 1.48497 * 109.46991 * 270.00162 * 3 2 1 5 5 H 1.48504 * 109.46791 * 29.99869 * 3 2 1 6 6 H 1.48494 * 109.47012 * 149.99724 * 3 2 1 7 7 C 1.37874 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00142 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00240 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46974 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.46878 * 305.00320 * 11 10 9 13 13 N 1.46899 * 109.46710 * 64.99971 * 11 10 9 14 14 C 1.50696 * 109.47191 * 185.00145 * 11 10 9 15 15 O 1.21276 * 119.99981 * 260.00373 * 14 11 10 16 16 N 1.34779 * 120.00277 * 79.99891 * 14 11 10 17 17 C 1.47156 * 120.97697 * 5.06372 * 16 14 11 18 18 C 1.53303 * 108.37983 * 230.55455 * 17 16 14 19 19 O 1.42960 * 109.21977 * 307.69620 * 18 17 16 20 20 C 1.42968 * 114.16842 * 62.58485 * 19 18 17 21 21 C 1.47145 * 120.98264 * 185.08134 * 16 14 11 22 22 H 1.09004 * 109.68257 * 249.20215 * 21 16 14 23 23 C 1.52997 * 109.68505 * 9.71808 * 21 16 14 24 24 C 1.52999 * 109.46989 * 177.70002 * 23 21 16 25 25 C 1.53175 * 109.54072 * 65.22456 * 24 23 21 26 26 C 1.53283 * 109.06233 * 176.85236 * 25 24 23 27 27 O 1.42907 * 109.45648 * 302.43819 * 26 25 24 28 28 C 1.42903 * 114.09871 * 61.16471 * 27 26 25 29 29 C 1.53097 * 109.41167 * 298.83767 * 28 27 26 30 30 H 0.96999 * 119.99647 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47131 * 60.00053 * 9 7 2 32 32 H 1.08999 * 109.46437 * 300.00163 * 9 7 2 33 33 H 1.09006 * 109.47067 * 59.99962 * 10 9 7 34 34 H 1.08991 * 109.47509 * 300.00074 * 10 9 7 35 35 H 1.00900 * 111.00212 * 296.04342 * 13 11 10 36 36 H 1.00901 * 110.99835 * 59.99947 * 13 11 10 37 37 H 1.08998 * 109.68168 * 350.27021 * 17 16 14 38 38 H 1.08996 * 109.68113 * 110.83435 * 17 16 14 39 39 H 1.08996 * 109.51268 * 67.62004 * 18 17 16 40 40 H 1.09001 * 109.50985 * 187.72532 * 18 17 16 41 41 H 1.08998 * 109.51407 * 177.49099 * 20 19 18 42 42 H 1.08994 * 109.50816 * 57.33733 * 20 19 18 43 43 H 1.09007 * 109.46425 * 57.70659 * 23 21 16 44 44 H 1.08996 * 109.47507 * 297.70947 * 23 21 16 45 45 H 1.08996 * 109.54925 * 305.03866 * 24 23 21 46 46 H 1.09007 * 109.52165 * 296.83510 * 25 24 23 47 47 H 1.08998 * 109.52784 * 57.02601 * 25 24 23 48 48 H 1.09007 * 109.45913 * 182.44474 * 26 25 24 49 49 H 1.08993 * 109.47093 * 62.44500 * 26 25 24 50 50 H 1.08994 * 109.48081 * 178.85866 * 28 27 26 51 51 H 1.08992 * 109.48834 * 58.82571 * 28 27 26 52 52 H 1.08997 * 109.52383 * 297.70905 * 29 28 27 53 53 H 1.08991 * 109.57300 * 177.54622 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7885 -5.0068 0.8432 13 7 0.7282 -5.1188 -1.2538 14 6 2.4550 -6.1298 0.1250 15 8 2.7866 -6.7536 -0.8607 16 7 2.9583 -6.4585 1.3313 17 6 2.4889 -5.7904 2.5555 18 6 3.7127 -5.3046 3.3407 19 8 4.6198 -6.3949 3.5204 20 6 5.1441 -6.9270 2.3014 21 6 3.9937 -7.4958 1.4630 22 1 3.5751 -8.3714 1.9593 23 6 4.5104 -7.8870 0.0771 24 6 5.6263 -8.9236 0.2228 25 6 5.0521 -10.2147 0.8142 26 6 6.1611 -11.2707 0.8821 27 8 6.6976 -11.4822 -0.4254 28 6 7.2893 -10.3195 -1.0085 29 6 6.2272 -9.2264 -1.1534 30 1 -0.4849 0.8401 -0.0004 31 1 0.6248 -2.5572 -0.8897 32 1 0.6241 -2.5566 0.8903 33 1 2.8720 -3.6043 0.8906 34 1 2.8720 -3.6043 -0.8893 35 1 0.0234 -4.4009 -1.3300 36 1 1.3478 -5.1033 -2.0500 37 1 1.8608 -4.9396 2.2916 38 1 1.9191 -6.4940 3.1623 39 1 4.2075 -4.5068 2.7868 40 1 3.3956 -4.9297 4.3139 41 1 5.8569 -7.7201 2.5272 42 1 5.6440 -6.1351 1.7438 43 1 4.8994 -7.0030 -0.4284 44 1 3.6947 -8.3109 -0.5086 45 1 6.4022 -8.5341 0.8817 46 1 4.6714 -10.0183 1.8166 47 1 4.2427 -10.5772 0.1807 48 1 5.7493 -12.2058 1.2618 49 1 6.9517 -10.9249 1.5480 50 1 7.6901 -10.5693 -1.9908 51 1 8.0947 -9.9610 -0.3676 52 1 5.4413 -9.5690 -1.8266 53 1 6.6851 -8.3237 -1.5575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343126051.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:57 Heat of formation + Delta-G solvation = -152.935110 kcal Electronic energy + Delta-G solvation = -31807.638451 eV Core-core repulsion = 27678.044428 eV Total energy + Delta-G solvation = -4129.594023 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.96572 -40.28430 -39.44586 -37.43291 -36.39534 -35.64088 -34.83917 -32.71131 -31.94834 -31.72090 -29.78547 -28.26970 -27.63945 -26.00215 -24.98302 -24.46648 -23.33291 -22.81995 -22.01986 -20.90264 -20.01918 -18.76150 -18.21174 -17.67286 -17.24804 -16.96718 -16.86737 -16.67909 -16.56035 -16.30891 -16.06013 -15.71093 -15.53143 -15.42596 -15.28604 -14.92690 -14.75975 -14.55665 -14.33907 -13.92116 -13.73225 -13.57784 -13.41076 -13.12268 -13.00530 -12.84076 -12.73683 -12.52762 -12.47278 -12.28236 -12.20860 -12.03453 -11.89953 -11.83943 -11.54069 -11.35350 -11.31135 -11.21027 -11.12422 -10.57815 -10.46679 -10.08468 -9.65332 -9.50181 -8.22870 -6.33183 1.38405 1.39305 1.49284 1.54581 1.77029 2.38393 2.78203 3.00438 3.11004 3.34469 3.59081 3.70772 3.74039 3.79245 3.87754 3.97385 4.01296 4.06382 4.09006 4.13577 4.17003 4.21816 4.31040 4.36040 4.45458 4.53026 4.58100 4.60450 4.63539 4.75517 4.77561 4.79373 4.81077 4.83829 4.89556 4.92247 5.04688 5.07802 5.13569 5.18680 5.28960 5.43619 5.44578 5.61101 5.62466 5.78496 6.01598 6.05246 6.18958 6.29759 6.30485 6.44115 6.81922 7.13991 7.36123 8.87756 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.002603 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.107781 B =10753.262839 C =11094.595165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.956 3.044 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.033 3.967 10 C -0.117 4.117 11 C 0.078 3.922 12 H 0.105 0.895 13 N -0.829 5.829 14 C 0.529 3.471 15 O -0.550 6.550 16 N -0.613 5.613 17 C 0.066 3.934 18 C 0.046 3.954 19 O -0.386 6.386 20 C 0.053 3.947 21 C 0.114 3.886 22 H 0.089 0.911 23 C -0.091 4.091 24 C -0.092 4.092 25 C -0.148 4.148 26 C 0.058 3.942 27 O -0.407 6.407 28 C 0.061 3.939 29 C -0.147 4.147 30 H 0.264 0.736 31 H 0.001 0.999 32 H 0.004 0.996 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.352 0.648 36 H 0.344 0.656 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.055 0.945 48 H 0.102 0.898 49 H 0.065 0.935 50 H 0.099 0.901 51 H 0.064 0.936 52 H 0.054 0.946 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.264 -19.168 6.847 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.781 3.219 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.004 4.004 10 C -0.157 4.157 11 C -0.038 4.038 12 H 0.123 0.877 13 N -0.360 5.360 14 C 0.317 3.683 15 O -0.428 6.428 16 N -0.348 5.348 17 C -0.057 4.057 18 C -0.031 4.031 19 O -0.304 6.304 20 C -0.025 4.025 21 C 0.012 3.988 22 H 0.107 0.893 23 C -0.129 4.129 24 C -0.111 4.111 25 C -0.186 4.186 26 C -0.018 4.018 27 O -0.326 6.326 28 C -0.015 4.015 29 C -0.185 4.185 30 H 0.073 0.927 31 H 0.019 0.981 32 H 0.022 0.978 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.167 0.833 36 H 0.157 0.843 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.074 0.926 48 H 0.120 0.880 49 H 0.083 0.917 50 H 0.117 0.883 51 H 0.082 0.918 52 H 0.073 0.927 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.094 -20.351 6.698 24.602 hybrid contribution 0.152 2.644 -0.687 2.736 sum 12.246 -17.707 6.011 22.352 Atomic orbital electron populations 1.70055 1.07447 1.27765 1.51285 1.25832 0.95692 1.02858 0.94756 0.85580 0.78833 0.79144 0.78312 1.20251 1.20647 1.18917 1.21578 0.93245 0.92378 1.50891 0.92830 1.18942 0.93909 0.91858 0.95734 1.22107 0.98733 0.93721 1.01104 1.21471 0.94933 0.91632 0.95716 0.87717 1.58766 1.18350 1.55633 1.03293 1.20682 0.80956 0.84017 0.82620 1.90641 1.60617 1.53149 1.38379 1.48223 1.40583 1.39471 1.06545 1.22706 0.98160 0.99183 0.85633 1.23091 0.89107 0.88473 1.02408 1.87944 1.62198 1.50360 1.29898 1.23202 0.94734 0.99037 0.85485 1.22111 0.88488 0.90318 0.97921 0.89304 1.21893 0.98357 0.98347 0.94325 1.21377 0.97516 0.95162 0.97052 1.22296 0.98860 0.95238 1.02177 1.22758 0.95356 0.99779 0.83952 1.87899 1.77243 1.34847 1.32657 1.22661 0.94184 0.85360 0.99313 1.22167 0.99316 0.99660 0.97370 0.92717 0.98079 0.97809 0.91883 0.93969 0.83293 0.84342 0.88333 0.88616 0.93299 0.85112 0.85391 0.93424 0.93552 0.90603 0.89643 0.89452 0.92586 0.87977 0.91707 0.88273 0.91804 0.92748 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.37 13.29 21.45 0.28 -53.09 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.54 -29.12 9.11 25.60 0.23 -28.89 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.03 1.56 4.74 29.85 0.14 1.70 16 10 C -0.12 -4.44 4.52 30.60 0.14 -4.30 16 11 C 0.08 2.56 2.35 44.17 0.10 2.67 16 12 H 0.11 3.26 6.64 -2.39 -0.02 3.24 16 13 N -0.83 -28.25 8.94 -171.81 -1.54 -29.79 16 14 C 0.53 16.79 6.78 87.66 0.59 17.39 16 15 O -0.55 -19.83 11.99 -3.02 -0.04 -19.86 16 16 N -0.61 -15.67 3.02 -793.53 -2.40 -18.06 16 17 C 0.07 1.40 6.11 86.36 0.53 1.93 16 18 C 0.05 0.92 6.99 72.08 0.50 1.43 16 19 O -0.39 -8.04 10.74 -148.98 -1.60 -9.64 16 20 C 0.05 0.99 5.65 72.08 0.41 1.40 16 21 C 0.11 2.46 2.93 44.97 0.13 2.59 16 22 H 0.09 1.76 6.75 -2.38 -0.02 1.74 16 23 C -0.09 -2.15 2.69 30.59 0.08 -2.07 16 24 C -0.09 -1.60 2.03 -10.67 -0.02 -1.62 16 25 C -0.15 -2.33 5.12 30.75 0.16 -2.17 16 26 C 0.06 0.83 6.85 72.08 0.49 1.32 16 27 O -0.41 -7.88 10.77 -148.98 -1.60 -9.49 16 28 C 0.06 0.97 6.84 72.01 0.49 1.46 16 29 C -0.15 -2.69 5.42 30.69 0.17 -2.53 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 2.27 7.33 -2.38 -0.02 2.25 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.35 12.18 7.55 -89.69 -0.68 11.51 16 36 H 0.34 11.93 8.58 -89.69 -0.77 11.16 16 37 H 0.10 2.26 5.09 -2.39 -0.01 2.25 16 38 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.13 1.73 6.78 -2.39 -0.02 1.72 16 42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 1.30 7.43 -2.38 -0.02 1.28 16 44 H 0.08 2.26 6.13 -2.39 -0.01 2.25 16 45 H 0.09 1.20 6.35 -2.39 -0.02 1.19 16 46 H 0.09 1.13 6.78 -2.38 -0.02 1.11 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 53 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -65.60 397.35 -0.78 -66.38 By element: Atomic # 1 Polarization: 38.29 SS G_CDS: -0.53 Total: 37.76 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.61 Total: -8.84 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -3.65 Total: -100.94 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -3.24 Total: -39.00 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -65.60 -0.78 -66.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343126051.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.560 kcal (2) G-P(sol) polarization free energy of solvation -65.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds