Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00149 * 2 1 4 4 H 1.48494 * 109.47133 * 240.00545 * 3 2 1 5 5 H 1.48502 * 109.46683 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46927 * 120.00085 * 3 2 1 7 7 C 1.37877 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46645 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46645 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.47350 * 54.99854 * 12 11 10 14 14 N 1.46896 * 109.47197 * 294.99467 * 12 11 10 15 15 C 1.50705 * 109.46887 * 174.99580 * 12 11 10 16 16 O 1.21282 * 119.99856 * 100.00184 * 15 12 11 17 17 N 1.34777 * 119.99908 * 279.99598 * 15 12 11 18 18 C 1.47149 * 120.98230 * 5.38320 * 17 15 12 19 19 C 1.53301 * 108.38253 * 230.51261 * 18 17 15 20 20 O 1.42968 * 109.21976 * 307.69568 * 19 18 17 21 21 C 1.42966 * 114.16546 * 62.58087 * 20 19 18 22 22 C 1.47155 * 120.97749 * 185.35679 * 17 15 12 23 23 H 1.09006 * 109.67845 * 249.24621 * 22 17 15 24 24 C 1.52991 * 109.68364 * 9.76550 * 22 17 15 25 25 C 1.53000 * 109.47253 * 178.47595 * 24 22 17 26 26 H 1.09006 * 110.54913 * 56.29731 * 25 24 22 27 27 C 1.55217 * 110.64725 * 179.24282 * 25 24 22 28 28 C 1.54818 * 101.98953 * 155.43498 * 27 25 24 29 29 C 1.54100 * 104.30276 * 339.26465 * 28 27 25 30 30 O 1.43750 * 107.29353 * 357.90326 * 29 28 27 31 31 H 0.96999 * 119.99717 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47142 * 59.99734 * 9 7 2 33 33 H 1.09004 * 109.46737 * 299.99985 * 9 7 2 34 34 H 1.08995 * 109.46978 * 60.00067 * 10 9 7 35 35 H 1.08998 * 109.46891 * 299.99445 * 10 9 7 36 36 H 1.08998 * 109.47527 * 59.99679 * 11 10 9 37 37 H 1.08998 * 109.46841 * 299.99253 * 11 10 9 38 38 H 1.00903 * 111.00149 * 300.00361 * 14 12 11 39 39 H 1.00900 * 110.99972 * 63.95571 * 14 12 11 40 40 H 1.09000 * 109.68570 * 350.22920 * 18 17 15 41 41 H 1.08992 * 109.68619 * 110.75197 * 18 17 15 42 42 H 1.08999 * 109.51464 * 67.61754 * 19 18 17 43 43 H 1.08998 * 109.51117 * 187.77476 * 19 18 17 44 44 H 1.08995 * 109.50883 * 177.49346 * 21 20 19 45 45 H 1.09004 * 109.50874 * 57.34332 * 21 20 19 46 46 H 1.08997 * 109.47474 * 58.47842 * 24 22 17 47 47 H 1.08999 * 109.47280 * 298.47603 * 24 22 17 48 48 H 1.09005 * 110.89208 * 37.30546 * 27 25 24 49 49 H 1.09004 * 111.02834 * 273.62821 * 27 25 24 50 50 H 1.08993 * 110.48875 * 220.51904 * 28 27 25 51 51 H 1.09001 * 110.48818 * 98.00495 * 28 27 25 52 52 H 1.09000 * 109.87660 * 117.32389 * 29 28 27 53 53 H 1.09001 * 109.88198 * 238.47742 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0005 13 1 3.1580 -6.0432 0.8417 14 7 3.2384 -6.1418 -1.2552 15 6 1.7250 -7.4516 0.1228 16 8 1.5133 -8.1253 -0.8633 17 7 1.2899 -7.8671 1.3289 18 6 1.4305 -7.0143 2.5198 19 6 2.0812 -7.8427 3.6335 20 8 1.3480 -9.0580 3.8057 21 6 1.3479 -9.9092 2.6571 22 6 0.6598 -9.1867 1.4934 23 1 -0.4005 -9.0623 1.7134 24 6 0.8276 -10.0015 0.2095 25 6 0.2043 -11.3859 0.3989 26 1 -0.8424 -11.2977 0.6904 27 6 0.3426 -12.2303 -0.8961 28 6 0.2786 -13.6760 -0.3459 29 6 0.6490 -13.5333 1.1432 30 8 0.9427 -12.1461 1.3794 31 1 -0.4850 0.8401 0.0004 32 1 0.6240 -2.5567 -0.8902 33 1 0.6247 -2.5570 0.8897 34 1 2.8719 -3.6043 0.8894 35 1 2.8719 -3.6044 -0.8906 36 1 0.8538 -5.0446 -0.8913 37 1 0.8534 -5.0450 0.8886 38 1 2.6267 -6.2396 -2.0517 39 1 3.8002 -5.3071 -1.3311 40 1 2.0604 -6.1564 2.2848 41 1 0.4481 -6.6707 2.8433 42 1 3.1108 -8.0742 3.3609 43 1 2.0689 -7.2751 4.5640 44 1 0.8082 -10.8283 2.8852 45 1 2.3750 -10.1482 2.3810 46 1 1.8884 -10.1087 -0.0169 47 1 0.3303 -9.4888 -0.6139 48 1 1.2995 -12.0415 -1.3829 49 1 -0.4846 -12.0372 -1.5792 50 1 0.9998 -14.3118 -0.8592 51 1 -0.7281 -14.0802 -0.4515 52 1 -0.1898 -13.8457 1.7652 53 1 1.5257 -14.1411 1.3670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345392408.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -147.935271 kcal Electronic energy + Delta-G solvation = -31280.502287 eV Core-core repulsion = 27151.125073 eV Total energy + Delta-G solvation = -4129.377213 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.94198 -40.30283 -39.41828 -37.58816 -35.92936 -35.39573 -34.36928 -33.06844 -32.97600 -30.85313 -29.66320 -28.80479 -27.00239 -26.73691 -24.54428 -24.19913 -22.62218 -22.38063 -22.04879 -21.71327 -20.09988 -18.59330 -18.44920 -17.81524 -17.50363 -17.00141 -16.85174 -16.53910 -16.47459 -16.32789 -16.14046 -15.78825 -15.74950 -15.33767 -15.12380 -14.80460 -14.50111 -14.32070 -14.21897 -13.85019 -13.75447 -13.58367 -13.38112 -13.14876 -12.87688 -12.75816 -12.58107 -12.51135 -12.43090 -12.30998 -12.27509 -12.10881 -11.90943 -11.58680 -11.55348 -11.50398 -11.40090 -11.22869 -11.19144 -10.60245 -10.55264 -10.18797 -9.63806 -9.55889 -8.20037 -6.31219 1.40685 1.43053 1.50668 1.52136 1.74317 2.40850 2.72731 3.00781 3.13391 3.33688 3.62606 3.64545 3.68630 3.79227 3.91610 3.93156 4.01143 4.03834 4.05553 4.09512 4.17347 4.25057 4.29627 4.37012 4.44212 4.52929 4.53597 4.58499 4.70167 4.74585 4.76964 4.85356 4.87808 4.92759 4.96857 4.99463 5.06386 5.11895 5.17029 5.22071 5.22998 5.24384 5.50833 5.51954 5.72667 5.85065 5.97914 6.01264 6.13810 6.23727 6.29748 6.47552 6.86580 7.10703 7.38483 8.91268 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.002216 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.856598 B =12634.440692 C =13298.109436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.093 4.093 11 C -0.135 4.135 12 C 0.083 3.917 13 H 0.116 0.884 14 N -0.830 5.830 15 C 0.525 3.475 16 O -0.550 6.550 17 N -0.613 5.613 18 C 0.064 3.936 19 C 0.046 3.954 20 O -0.395 6.395 21 C 0.067 3.933 22 C 0.114 3.886 23 H 0.079 0.921 24 C -0.093 4.093 25 C 0.070 3.930 26 H 0.079 0.921 27 C -0.147 4.147 28 C -0.151 4.151 29 C 0.038 3.962 30 O -0.391 6.391 31 H 0.263 0.737 32 H -0.017 1.017 33 H -0.008 1.008 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.346 0.654 39 H 0.357 0.643 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.099 0.901 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.068 0.932 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 -26.623 4.825 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.131 4.131 11 C -0.175 4.175 12 C -0.032 4.032 13 H 0.134 0.866 14 N -0.362 5.362 15 C 0.314 3.686 16 O -0.429 6.429 17 N -0.348 5.348 18 C -0.059 4.059 19 C -0.032 4.032 20 O -0.314 6.314 21 C -0.010 4.010 22 C 0.011 3.989 23 H 0.097 0.903 24 C -0.131 4.131 25 C 0.013 3.987 26 H 0.097 0.903 27 C -0.185 4.185 28 C -0.188 4.188 29 C -0.038 4.038 30 O -0.311 6.311 31 H 0.071 0.929 32 H 0.002 0.998 33 H 0.011 0.989 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.172 0.828 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.117 0.883 48 H 0.084 0.916 49 H 0.106 0.894 50 H 0.101 0.899 51 H 0.106 0.894 52 H 0.087 0.913 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.394 -27.496 4.914 28.034 hybrid contribution -0.570 2.021 -0.771 2.237 sum 1.825 -25.475 4.144 25.874 Atomic orbital electron populations 1.70095 1.07844 1.27756 1.51781 1.25996 0.95734 1.03428 0.94880 0.85528 0.78258 0.78190 0.79252 1.19260 1.21205 1.18931 1.21692 0.93652 0.92267 1.50285 0.91826 1.18988 0.94438 0.93243 0.94562 1.21426 0.97909 0.92428 1.01341 1.22258 0.98339 0.94525 1.02342 1.21411 0.95112 0.90421 0.96251 0.86607 1.58708 1.28068 1.46311 1.03150 1.20796 0.78182 0.87190 0.82403 1.90614 1.57557 1.56677 1.38009 1.48254 1.60303 1.17924 1.08292 1.22750 1.03506 0.94421 0.85185 1.23142 0.94612 0.85568 0.99831 1.87960 1.74403 1.31752 1.37237 1.23163 1.00373 0.93128 0.84374 1.22049 0.97413 0.82324 0.97135 0.90285 1.22025 1.01933 0.92523 0.96580 1.23414 0.95705 0.91564 0.88056 0.90325 1.23116 1.03057 0.94844 0.97451 1.22923 1.03575 0.96760 0.95575 1.23309 1.01593 0.82982 0.95919 1.88875 1.69757 1.17759 1.54687 0.92880 0.99828 0.98936 0.91673 0.92611 0.93301 0.91194 0.84055 0.82773 0.87292 0.89800 0.92283 0.85255 0.85702 0.93656 0.92675 0.88256 0.91606 0.89440 0.89885 0.89378 0.91341 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.54 -29.73 9.11 25.60 0.23 -29.49 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.41 4.92 30.60 0.15 -3.26 16 11 C -0.13 -4.15 4.56 30.60 0.14 -4.01 16 12 C 0.08 2.18 2.35 44.17 0.10 2.29 16 13 H 0.12 2.65 6.78 -2.39 -0.02 2.63 16 14 N -0.83 -22.05 8.94 -171.80 -1.54 -23.58 16 15 C 0.53 14.75 6.79 87.66 0.59 15.35 16 16 O -0.55 -17.86 12.01 -3.04 -0.04 -17.89 16 17 N -0.61 -14.73 3.02 -793.53 -2.40 -17.13 16 18 C 0.06 1.26 5.68 86.36 0.49 1.75 16 19 C 0.05 0.81 6.99 72.08 0.50 1.31 16 20 O -0.39 -8.74 10.74 -148.98 -1.60 -10.34 16 21 C 0.07 1.43 5.08 72.08 0.37 1.80 16 22 C 0.11 2.58 3.21 44.96 0.14 2.73 16 23 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 24 C -0.09 -2.16 3.11 30.59 0.09 -2.07 16 25 C 0.07 1.27 3.21 31.35 0.10 1.37 16 26 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 27 C -0.15 -2.30 6.61 31.98 0.21 -2.09 16 28 C -0.15 -1.72 7.01 31.59 0.22 -1.50 16 29 C 0.04 0.50 7.70 72.35 0.56 1.05 16 30 O -0.39 -7.28 7.95 -148.98 -1.18 -8.47 16 31 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 32 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 1.96 6.87 -2.39 -0.02 1.94 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 2.10 6.87 -2.39 -0.02 2.08 16 38 H 0.35 9.68 8.58 -89.69 -0.77 8.91 16 39 H 0.36 8.73 7.55 -89.69 -0.68 8.05 16 40 H 0.11 1.99 5.15 -2.39 -0.01 1.97 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.13 2.58 5.96 -2.39 -0.01 2.56 16 45 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.05 1.53 7.49 -2.39 -0.02 1.51 16 47 H 0.10 2.69 6.05 -2.39 -0.01 2.68 16 48 H 0.07 1.21 8.06 -2.38 -0.02 1.19 16 49 H 0.09 1.21 8.14 -2.38 -0.02 1.20 16 50 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 53 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -68.05 401.08 -0.46 -68.51 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -0.54 Total: 32.61 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 4.52 Total: -13.06 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -3.65 Total: -96.77 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -2.82 Total: -36.70 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -68.05 -0.46 -68.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345392408.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.429 kcal (2) G-P(sol) polarization free energy of solvation -68.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds