Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00059 * 2 1 4 4 C 1.53002 * 109.47048 * 66.05209 * 3 2 1 5 5 C 1.53001 * 109.47080 * 179.97438 * 4 3 2 6 6 F 1.39906 * 109.46936 * 179.97438 * 5 4 3 7 7 C 1.38589 * 110.99669 * 236.04732 * 2 1 3 8 8 N 1.31216 * 126.47024 * 110.75079 * 7 2 1 9 9 N 1.28529 * 109.85983 * 180.02562 * 8 7 2 10 10 C 1.30292 * 110.05484 * 359.97438 * 9 8 7 11 11 C 1.50699 * 126.34999 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.46934 * 82.73628 * 11 10 9 13 13 C 1.50707 * 109.46959 * 174.93994 * 12 11 10 14 14 H 1.07992 * 119.99708 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99796 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00500 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99783 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47253 * 269.99682 * 17 15 13 19 19 H 1.48504 * 109.47389 * 30.00087 * 17 15 13 20 20 H 1.48505 * 109.47384 * 149.99670 * 17 15 13 21 21 N 1.36454 * 126.47731 * 291.06490 * 7 2 1 22 22 C 1.46502 * 127.13196 * 0.02562 * 21 7 2 23 23 C 1.53004 * 109.47171 * 274.47105 * 22 21 7 24 24 H 1.08996 * 109.86564 * 52.90547 * 23 22 21 25 25 C 1.54098 * 109.88112 * 173.91390 * 23 22 21 26 26 C 1.54805 * 104.18613 * 121.45273 * 25 23 22 27 27 C 1.54996 * 102.09729 * 20.88336 * 26 25 23 28 28 O 1.43747 * 109.87551 * 291.90420 * 23 22 21 29 29 H 1.09003 * 109.47377 * 181.03916 * 1 2 3 30 30 H 1.09004 * 109.46812 * 301.02980 * 1 2 3 31 31 H 1.08995 * 109.47268 * 61.03421 * 1 2 3 32 32 H 1.09009 * 109.47162 * 186.04747 * 3 2 1 33 33 H 1.09000 * 109.47126 * 306.04950 * 3 2 1 34 34 H 1.08996 * 109.46838 * 300.00003 * 4 3 2 35 35 H 1.09000 * 109.47369 * 59.99890 * 4 3 2 36 36 H 1.08999 * 109.46639 * 299.99481 * 5 4 3 37 37 H 1.09000 * 109.47084 * 59.99747 * 5 4 3 38 38 H 1.08997 * 109.46953 * 322.74164 * 11 10 9 39 39 H 1.08998 * 109.47298 * 202.73851 * 11 10 9 40 40 H 1.08998 * 109.47352 * 54.93826 * 12 11 10 41 41 H 1.08995 * 109.47148 * 294.93909 * 12 11 10 42 42 H 0.97002 * 119.99923 * 359.97438 * 16 15 13 43 43 H 1.08993 * 109.47506 * 34.47301 * 22 21 7 44 44 H 1.08998 * 109.46884 * 154.47205 * 22 21 7 45 45 H 1.08999 * 110.48615 * 240.13153 * 25 23 22 46 46 H 1.08999 * 110.48454 * 2.64329 * 25 23 22 47 47 H 1.09009 * 110.90485 * 139.07993 * 26 25 23 48 48 H 1.09000 * 110.91033 * 262.64540 * 26 25 23 49 49 H 1.08992 * 110.62096 * 81.47154 * 27 26 25 50 50 H 1.08993 * 110.61967 * 204.32001 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6316 2.0573 1.3183 5 6 2.1804 3.4855 1.3186 6 9 1.8472 4.1129 2.5239 7 6 1.9656 -0.7226 -1.0733 8 7 2.5941 -0.2360 -2.1173 9 7 2.9134 -1.1892 -2.9181 10 6 2.5114 -2.3311 -2.4364 11 6 2.6940 -3.6839 -3.0748 12 6 4.0912 -4.2163 -2.7507 13 6 4.2301 -5.6195 -3.2829 14 1 3.4044 -6.0846 -3.8008 15 6 5.4111 -6.3092 -3.1085 16 7 6.4167 -5.7425 -2.4782 17 14 5.5829 -8.0486 -3.7675 18 1 5.1528 -9.0168 -2.7270 19 1 4.7314 -8.2073 -4.9737 20 1 7.0012 -8.3044 -4.1257 21 7 1.8881 -2.0739 -1.2469 22 6 1.2678 -3.0473 -0.3446 23 6 2.2765 -3.4633 0.7280 24 1 2.6837 -2.5782 1.2168 25 6 1.5905 -4.3683 1.7697 26 6 2.4069 -5.6828 1.7266 27 6 3.7462 -5.2131 1.1036 28 8 3.3396 -4.2242 0.1304 29 1 -0.3634 -1.0275 0.0186 30 1 -0.3633 0.5298 0.8807 31 1 -0.3633 0.4977 -0.8991 32 1 3.0798 1.3444 -0.1083 33 1 1.5610 1.9273 -0.8309 34 1 0.5473 2.0844 1.4266 35 1 2.0659 1.5014 2.1492 36 1 3.2647 3.4580 1.2106 37 1 1.7464 4.0417 0.4877 38 1 2.5811 -3.5940 -4.1552 39 1 1.9436 -4.3729 -2.6871 40 1 4.2366 -4.2214 -1.6704 41 1 4.8409 -3.5758 -3.2151 42 1 6.3276 -4.8391 -2.1363 43 1 0.3962 -2.5979 0.1311 44 1 0.9595 -3.9246 -0.9132 45 1 1.6444 -3.9179 2.7608 46 1 0.5528 -4.5519 1.4911 47 1 2.5622 -6.0773 2.7309 48 1 1.9199 -6.4226 1.0912 49 1 4.3851 -4.7617 1.8625 50 1 4.2568 -6.0453 0.6191 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345403369.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -22.899484 kcal Electronic energy + Delta-G solvation = -31361.704554 eV Core-core repulsion = 27146.581746 eV Total energy + Delta-G solvation = -4215.122809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.202 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.88494 -42.67136 -39.28143 -38.14135 -35.01721 -34.20216 -32.98435 -32.06892 -31.46244 -30.06800 -28.73396 -27.11546 -25.96384 -24.96516 -24.47239 -22.32218 -22.17660 -21.62502 -21.08632 -20.44867 -19.90568 -17.33934 -16.86107 -16.78481 -16.53759 -16.17869 -16.11545 -15.75544 -15.44258 -15.35125 -14.92860 -14.57250 -14.43990 -13.80832 -13.64360 -13.59487 -13.54720 -13.12915 -12.94452 -12.69923 -12.34587 -12.13444 -11.86364 -11.76580 -11.68851 -11.63266 -11.49112 -11.36040 -11.01948 -10.91796 -10.89805 -10.82031 -10.77806 -10.40289 -10.15933 -10.04823 -9.95355 -9.79390 -9.47784 -9.29177 -8.51310 -8.20589 -8.02307 -6.25954 -3.93372 2.07840 2.38626 3.24452 3.44424 3.49944 3.53112 3.65231 3.92308 4.36593 4.43171 4.49344 4.49955 4.55457 4.60171 4.66610 4.72519 4.81983 4.86815 4.91824 5.02207 5.07495 5.12185 5.20646 5.26199 5.34614 5.39032 5.44170 5.46924 5.51634 5.53177 5.59513 5.65126 5.67621 5.76879 5.87204 5.93023 6.10861 6.14911 6.15897 6.38042 6.46036 6.54568 6.71971 6.93056 7.10475 7.38232 7.61439 7.83090 8.28728 8.58197 8.98311 9.16828 9.77626 11.14777 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.014112 B = 0.003117 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.596153 B = 8981.919492 C = 9873.031027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.454 5.454 3 C 0.075 3.925 4 C -0.151 4.151 5 C 0.063 3.937 6 F -0.219 7.219 7 C 0.326 3.674 8 N -0.321 5.321 9 N -0.299 5.299 10 C 0.226 3.774 11 C -0.018 4.018 12 C 0.012 3.988 13 C -0.594 4.594 14 H 0.046 0.954 15 C 0.017 3.983 16 N -0.914 5.914 17 Si 1.067 2.933 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.285 1.285 21 N -0.470 5.470 22 C 0.114 3.886 23 C 0.058 3.942 24 H 0.073 0.927 25 C -0.145 4.145 26 C -0.153 4.153 27 C 0.048 3.952 28 O -0.338 6.338 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.007 0.993 42 H 0.271 0.729 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.054 0.946 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.998 9.317 12.573 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.177 5.177 3 C -0.053 4.053 4 C -0.189 4.189 5 C 0.008 3.992 6 F -0.200 7.200 7 C -0.030 4.030 8 N -0.165 5.165 9 N -0.138 5.138 10 C -0.041 4.041 11 C -0.058 4.058 12 C -0.026 4.026 13 C -0.633 4.633 14 H 0.064 0.936 15 C -0.187 4.187 16 N -0.550 5.550 17 Si 0.897 3.103 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.211 1.211 21 N -0.164 5.164 22 C -0.009 4.009 23 C -0.001 4.001 24 H 0.091 0.909 25 C -0.183 4.183 26 C -0.190 4.190 27 C -0.029 4.029 28 O -0.256 6.256 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.072 0.928 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.103 8.884 11.749 19.714 hybrid contribution -2.044 0.668 0.744 2.276 sum -15.147 9.552 12.493 21.835 Atomic orbital electron populations 1.22635 0.85058 1.02881 1.02260 1.58604 1.08509 1.14877 1.35746 1.21884 1.01909 0.85054 0.96408 1.22203 1.02522 0.95121 0.99082 1.21895 1.01652 0.92535 0.83130 1.92768 1.94437 1.83989 1.48838 1.22287 1.04309 0.82421 0.94016 1.74481 1.17811 1.24237 0.99988 1.74010 1.21113 0.95585 1.23044 1.25586 0.94762 0.99464 0.84295 1.20241 1.02458 0.84342 0.98772 1.19361 0.88734 0.95756 0.98710 1.21961 1.01659 0.99586 1.40060 0.93582 1.25690 0.92451 1.04854 0.95701 1.70705 1.32596 1.16472 1.35228 0.83571 0.75904 0.74897 0.75961 1.21727 1.21593 1.21126 1.46105 1.45052 1.05999 1.19242 1.22169 0.95153 0.92122 0.91485 1.23059 0.89049 0.95731 0.92270 0.90938 1.22893 1.00272 0.95929 0.99202 1.23127 0.96758 0.97344 1.01798 1.23563 0.95453 0.92242 0.91594 1.89278 1.51061 1.47772 1.37522 0.91131 0.89474 0.94021 0.89091 0.92478 0.90548 0.89697 0.90304 0.90575 0.90184 0.91457 0.93747 0.97430 0.91881 0.88348 0.87862 0.90479 0.90535 0.90448 0.90197 0.92807 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.18 60.06 0.55 0.72 16 2 N -0.45 -5.46 4.78 -182.37 -0.87 -6.33 16 3 C 0.07 0.78 4.37 -3.82 -0.02 0.77 16 4 C -0.15 -1.18 5.60 -26.73 -0.15 -1.32 16 5 C 0.06 0.47 7.55 37.16 0.28 0.75 16 6 F -0.22 -2.17 17.36 2.25 0.04 -2.13 16 7 C 0.33 5.35 6.96 -318.86 -2.22 3.13 16 8 N -0.32 -6.34 11.35 30.32 0.34 -5.99 16 9 N -0.30 -6.63 12.18 32.99 0.40 -6.23 16 10 C 0.23 4.62 7.32 -154.02 -1.13 3.49 16 11 C -0.02 -0.39 5.59 -27.88 -0.16 -0.55 16 12 C 0.01 0.32 4.27 -27.88 -0.12 0.20 16 13 C -0.59 -16.62 9.11 -34.44 -0.31 -16.93 16 14 H 0.05 1.26 7.74 -52.49 -0.41 0.85 16 15 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 16 N -0.91 -27.94 13.65 55.43 0.76 -27.18 16 17 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 N -0.47 -7.86 2.80 -114.08 -0.32 -8.18 16 22 C 0.11 1.48 5.41 -4.04 -0.02 1.46 16 23 C 0.06 0.79 3.66 -26.16 -0.10 0.69 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 C -0.14 -1.44 6.64 -25.21 -0.17 -1.61 16 26 C -0.15 -1.72 7.16 -24.73 -0.18 -1.89 16 27 C 0.05 0.74 7.72 38.21 0.29 1.03 16 28 O -0.34 -6.14 8.35 -35.23 -0.29 -6.43 16 29 H 0.07 0.59 5.69 -51.93 -0.30 0.29 16 30 H 0.09 0.56 6.42 -51.93 -0.33 0.23 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 1.11 7.96 -51.92 -0.41 0.69 16 33 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 34 H 0.08 0.52 6.53 -51.93 -0.34 0.18 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.07 1.33 7.00 -51.93 -0.36 0.96 16 40 H 0.04 1.19 4.91 -51.93 -0.26 0.93 16 41 H 0.01 0.22 8.01 -51.93 -0.42 -0.20 16 42 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 43 H 0.10 0.94 5.73 -51.93 -0.30 0.65 16 44 H 0.10 1.34 7.01 -51.93 -0.36 0.98 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.62 7.70 -51.93 -0.40 0.22 16 47 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 397.28 15.07 5.99 5.99 Total: -1.00 -34.93 397.28 -10.62 -45.55 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.05 Total: 0.55 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -3.53 Total: -9.68 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.31 Total: -53.91 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.29 Total: -6.43 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.93 -10.62 -45.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345403369.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.650 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds