Wall clock time and date at job start Sat Apr 11 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99883 * 2 1 4 4 H 1.48503 * 109.46965 * 269.99705 * 3 2 1 5 5 H 1.48505 * 109.47069 * 29.99658 * 3 2 1 6 6 H 1.48498 * 109.47185 * 149.99602 * 3 2 1 7 7 C 1.37872 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00366 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99728 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.47042 * 300.00392 * 9 7 2 11 11 O 1.42900 * 109.47102 * 60.00266 * 9 7 2 12 12 C 1.52998 * 109.47184 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46973 * 173.74699 * 12 9 7 14 14 C 1.46847 * 111.00189 * 310.26638 * 13 12 9 15 15 C 1.53040 * 109.52173 * 185.84062 * 14 13 12 16 16 C 1.53119 * 109.27805 * 300.81858 * 15 14 13 17 17 C 1.53123 * 109.15874 * 57.65698 * 16 15 14 18 18 C 1.46849 * 110.99968 * 74.48148 * 13 12 9 19 19 H 1.09000 * 109.45975 * 294.17161 * 18 13 12 20 20 C 1.52995 * 109.46465 * 54.15027 * 18 13 12 21 21 O 1.45199 * 109.47091 * 63.00968 * 20 18 13 22 22 C 1.34642 * 116.99799 * 179.97438 * 21 20 18 23 23 O 1.21506 * 120.00204 * 0.02562 * 22 21 20 24 24 N 1.34776 * 119.99539 * 179.97438 * 22 21 20 25 25 C 1.46929 * 120.63358 * 359.72736 * 24 22 21 26 26 C 1.53626 * 108.54116 * 126.36755 * 25 24 22 27 27 C 1.53038 * 109.24588 * 54.85414 * 26 25 24 28 28 C 1.53037 * 109.53989 * 298.51429 * 27 26 25 29 29 C 1.46923 * 120.62655 * 180.02562 * 24 22 21 30 30 H 0.97000 * 119.99955 * 0.02562 * 1 2 3 31 31 H 0.96703 * 113.99876 * 59.99598 * 11 9 7 32 32 H 1.08997 * 109.47186 * 293.75137 * 12 9 7 33 33 H 1.09000 * 109.46808 * 53.74838 * 12 9 7 34 34 H 1.08993 * 109.46005 * 305.85651 * 14 13 12 35 35 H 1.09001 * 109.46056 * 65.82198 * 14 13 12 36 36 H 1.08999 * 109.49882 * 180.88107 * 15 14 13 37 37 H 1.08997 * 109.53374 * 60.78183 * 15 14 13 38 38 H 1.08996 * 109.52137 * 297.75283 * 16 15 14 39 39 H 1.08997 * 109.52139 * 177.56103 * 16 15 14 40 40 H 1.09000 * 109.50272 * 182.39940 * 17 16 15 41 41 H 1.08999 * 109.53576 * 62.30351 * 17 16 15 42 42 H 1.09004 * 109.47162 * 183.01163 * 20 18 13 43 43 H 1.09001 * 109.47139 * 303.00756 * 20 18 13 44 44 H 1.08998 * 109.58237 * 246.19724 * 25 24 22 45 45 H 1.09001 * 109.58474 * 6.62636 * 25 24 22 46 46 H 1.09005 * 109.63150 * 294.86440 * 26 25 24 47 47 H 1.09003 * 109.43030 * 174.72892 * 26 25 24 48 48 H 1.08994 * 109.46213 * 178.48886 * 27 26 25 49 49 H 1.09004 * 109.44327 * 58.52566 * 27 26 25 50 50 H 1.09004 * 109.49542 * 301.41155 * 28 27 26 51 51 H 1.08999 * 109.49817 * 181.31792 * 28 27 26 52 52 H 1.09005 * 109.59143 * 353.37445 * 29 24 22 53 53 H 1.09004 * 109.59045 * 113.65949 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6803 -0.8888 11 8 3.9874 -0.5202 1.1680 12 6 4.0216 -2.6365 0.0010 13 7 5.4828 -2.6392 -0.1493 14 6 5.8977 -1.7924 -1.2750 15 6 7.4060 -1.9333 -1.4923 16 6 8.1418 -1.5149 -0.2163 17 6 7.6563 -2.3797 0.9503 18 6 6.1408 -2.2259 1.0968 19 1 5.9001 -1.1836 1.3062 20 6 5.6485 -3.1041 2.2488 21 8 6.0312 -4.4832 2.0039 22 6 5.6715 -5.3912 2.9307 23 8 5.0543 -5.0409 3.9169 24 7 5.9952 -6.6888 2.7639 25 6 6.7351 -7.1288 1.5731 26 6 7.9776 -7.9079 2.0303 27 6 7.5462 -9.0461 2.9580 28 6 6.8600 -8.4650 4.1963 29 6 5.6092 -7.6913 3.7662 30 1 -0.4850 0.8401 -0.0004 31 1 3.7017 -0.9236 1.9991 32 1 3.7521 -3.1173 0.9414 33 1 3.5700 -3.1814 -0.8281 34 1 5.3703 -2.1031 -2.1768 35 1 5.6580 -0.7522 -1.0545 36 1 7.7161 -1.2927 -2.3178 37 1 7.6451 -2.9705 -1.7268 38 1 7.9343 -0.4662 -0.0035 39 1 9.2142 -1.6547 -0.3518 40 1 8.1453 -2.0581 1.8698 41 1 7.8989 -3.4243 0.7553 42 1 6.0959 -2.7632 3.1825 43 1 4.5629 -3.0354 2.3198 44 1 6.0996 -7.7729 0.9655 45 1 7.0409 -6.2594 0.9911 46 1 8.6530 -7.2395 2.5644 47 1 8.4871 -8.3212 1.1598 48 1 8.4226 -9.6178 3.2631 49 1 6.8515 -9.7002 2.4310 50 1 7.5459 -7.7914 4.7099 51 1 6.5739 -9.2749 4.8674 52 1 5.1718 -7.1934 4.6316 53 1 4.8820 -8.3789 3.3341 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434470113.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:45 Heat of formation + Delta-G solvation = -151.135125 kcal Electronic energy + Delta-G solvation = -32418.521463 eV Core-core repulsion = 28289.005494 eV Total energy + Delta-G solvation = -4129.515969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75459 -40.66832 -38.99396 -37.67844 -37.14275 -34.49970 -34.22246 -33.98246 -32.77943 -31.97055 -30.24921 -27.99610 -26.90621 -26.18877 -24.43089 -24.24294 -22.86955 -22.38941 -22.00764 -20.82547 -20.10176 -19.42774 -19.07460 -17.95806 -17.70571 -16.93698 -16.72982 -16.53844 -16.17370 -15.87181 -15.53656 -15.49881 -15.31202 -15.13527 -15.00889 -14.74951 -14.69541 -14.47533 -14.09864 -13.94991 -13.66484 -13.49455 -13.43667 -13.27401 -12.99371 -12.71185 -12.62099 -12.34921 -12.25030 -12.14539 -12.05066 -11.89876 -11.76184 -11.66925 -11.48114 -11.45083 -11.36368 -11.23233 -11.18395 -10.96838 -10.84923 -10.50906 -9.76113 -8.83075 -8.38352 -6.53158 1.15746 1.34965 1.40758 1.68958 1.74530 2.38818 2.87721 2.98118 3.03716 3.74831 3.79392 3.86304 3.90841 3.96492 4.00035 4.04133 4.13829 4.14376 4.32126 4.35690 4.36110 4.42864 4.48294 4.50717 4.57737 4.62810 4.66761 4.82534 4.85918 4.91471 4.92447 4.95306 5.01940 5.04950 5.10332 5.11245 5.15460 5.16168 5.23957 5.30460 5.32380 5.38427 5.43376 5.44750 5.47101 5.54628 5.59729 6.01526 6.19394 6.28225 6.30388 6.60385 7.04559 7.23709 7.27301 8.75997 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.003371 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.779512 B = 8303.897532 C = 9487.136865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.027 3.973 3 Si 0.940 3.060 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.032 0.968 9 C 0.174 3.826 10 H 0.059 0.941 11 O -0.576 6.576 12 C 0.045 3.955 13 N -0.517 5.517 14 C 0.047 3.953 15 C -0.107 4.107 16 C -0.116 4.116 17 C -0.102 4.102 18 C 0.078 3.922 19 H 0.084 0.916 20 C 0.096 3.904 21 O -0.343 6.343 22 C 0.637 3.363 23 O -0.617 6.617 24 N -0.591 5.591 25 C 0.108 3.892 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.128 4.128 29 C 0.119 3.881 30 H 0.266 0.734 31 H 0.363 0.637 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.056 0.944 51 H 0.097 0.903 52 H 0.073 0.927 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.959 -15.601 3.041 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.173 4.173 3 Si 0.764 3.236 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.123 1.123 7 C -0.603 4.603 8 H 0.050 0.950 9 C 0.115 3.885 10 H 0.077 0.923 11 O -0.383 6.383 12 C -0.084 4.084 13 N -0.241 5.241 14 C -0.081 4.081 15 C -0.144 4.144 16 C -0.154 4.154 17 C -0.139 4.139 18 C -0.030 4.030 19 H 0.101 0.899 20 C 0.022 3.978 21 O -0.256 6.256 22 C 0.392 3.608 23 O -0.510 6.510 24 N -0.332 5.332 25 C -0.014 4.014 26 C -0.167 4.167 27 C -0.155 4.155 28 C -0.166 4.166 29 C -0.002 4.002 30 H 0.075 0.925 31 H 0.211 0.789 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.077 0.923 47 H 0.114 0.886 48 H 0.099 0.901 49 H 0.093 0.907 50 H 0.075 0.925 51 H 0.115 0.885 52 H 0.091 0.909 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 23.086 -15.444 2.753 27.912 hybrid contribution -1.710 1.426 0.605 2.308 sum 21.376 -14.018 3.358 25.782 Atomic orbital electron populations 1.70101 1.08619 1.28360 1.50929 1.25911 0.95255 1.03717 0.92393 0.85975 0.82039 0.77267 0.78317 1.21166 1.22686 1.12325 1.21836 0.92613 0.93109 1.52731 0.94975 1.20257 0.91159 0.91184 0.85858 0.92303 1.86575 1.76642 1.58471 1.16649 1.22607 0.87679 0.96538 1.01525 1.62337 1.05215 1.52313 1.04195 1.22182 0.97492 0.94732 0.93694 1.21542 0.92429 1.02413 0.98047 1.21559 1.00459 0.98932 0.94429 1.21527 0.92169 1.01241 0.99013 1.22030 0.95891 0.96943 0.88181 0.89865 1.23191 0.99681 0.76181 0.98790 1.86312 1.73905 1.18871 1.46470 1.18479 0.78058 0.83187 0.81102 1.90944 1.46728 1.80559 1.32763 1.47088 1.58117 1.02875 1.25108 1.22016 0.93478 1.00360 0.85542 1.21978 0.96178 0.97568 1.00929 1.21542 1.01236 0.97364 0.95405 1.21916 0.95926 0.99859 0.98867 1.21814 0.98165 0.89170 0.91046 0.92516 0.78908 0.91905 0.91765 0.91462 0.95699 0.90441 0.90899 0.92814 0.89846 0.90939 0.90924 0.90666 0.92736 0.90218 0.89534 0.92309 0.88575 0.90076 0.90694 0.92533 0.88500 0.90891 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.94 45.29 26.99 68.60 1.85 47.15 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.20 -9.08 5.31 99.48 0.53 -8.55 16 7 C -0.56 -31.94 9.34 25.60 0.24 -31.70 16 8 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 9 C 0.17 7.81 1.83 29.85 0.05 7.87 16 10 H 0.06 2.71 5.48 -2.39 -0.01 2.69 16 11 O -0.58 -24.10 7.30 -148.98 -1.09 -25.18 16 12 C 0.04 1.76 4.98 86.30 0.43 2.19 16 13 N -0.52 -16.59 4.62 -871.14 -4.02 -20.62 16 14 C 0.05 1.40 4.55 86.33 0.39 1.79 16 15 C -0.11 -2.37 6.09 30.65 0.19 -2.18 16 16 C -0.12 -2.40 6.00 30.68 0.18 -2.22 16 17 C -0.10 -2.34 5.21 30.65 0.16 -2.18 16 18 C 0.08 2.27 1.71 44.93 0.08 2.34 16 19 H 0.08 2.70 5.75 -2.39 -0.01 2.68 16 20 C 0.10 2.99 4.69 71.98 0.34 3.33 16 21 O -0.34 -10.43 7.97 -55.51 -0.44 -10.88 16 22 C 0.64 20.19 8.43 129.79 1.09 21.29 16 23 O -0.62 -23.83 15.54 19.82 0.31 -23.52 16 24 N -0.59 -13.98 2.97 -948.31 -2.81 -16.79 16 25 C 0.11 1.87 6.48 86.51 0.56 2.43 16 26 C -0.13 -1.52 6.10 30.82 0.19 -1.33 16 27 C -0.12 -1.16 5.88 30.62 0.18 -0.98 16 28 C -0.13 -1.64 6.08 30.68 0.19 -1.45 16 29 C 0.12 2.28 6.43 86.38 0.56 2.84 16 30 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 31 H 0.36 14.24 8.67 -74.06 -0.64 13.60 16 32 H 0.06 2.58 5.39 -2.39 -0.01 2.57 16 33 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 35 H 0.02 0.84 6.44 -2.39 -0.02 0.82 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.07 1.70 7.58 -2.39 -0.02 1.68 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 1.96 5.49 -2.39 -0.01 1.95 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.09 1.71 6.93 -2.39 -0.02 1.69 16 46 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 48 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 50 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.07 1.73 7.00 -2.38 -0.02 1.72 16 53 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -72.32 393.41 -0.54 -72.86 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.08 Total: 32.02 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 5.29 Total: 4.07 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -6.54 Total: -96.51 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -1.22 Total: -59.58 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.85 Total: 47.15 kcal Total: -72.32 -0.54 -72.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434470113.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.272 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds