Wall clock time and date at job start Sat Apr 11 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00246 * 2 1 4 4 H 1.48490 * 109.47326 * 239.99939 * 3 2 1 5 5 H 1.48496 * 109.46887 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46870 * 119.99677 * 3 2 1 7 7 C 1.38817 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99653 * 201.58612 * 7 2 1 9 9 N 1.36933 * 119.99823 * 21.58452 * 7 2 1 10 10 C 1.46506 * 120.00075 * 34.19361 * 9 7 2 11 11 C 1.53001 * 109.47068 * 95.55015 * 10 9 7 12 12 O 1.42903 * 109.47292 * 295.00184 * 11 10 9 13 13 C 1.46494 * 120.00260 * 214.19017 * 9 7 2 14 14 H 1.08997 * 109.50303 * 179.97438 * 13 9 7 15 15 C 1.53050 * 109.49758 * 300.00591 * 13 9 7 16 16 C 1.53042 * 109.53543 * 181.31674 * 15 13 9 17 17 C 1.53200 * 109.31061 * 298.62937 * 16 15 13 18 18 N 1.46927 * 108.77333 * 54.63840 * 17 16 15 19 19 C 1.34779 * 120.62758 * 126.40968 * 18 17 16 20 20 O 1.21274 * 119.99975 * 179.97438 * 19 18 17 21 21 C 1.50701 * 120.00028 * 0.02562 * 19 18 17 22 22 C 1.52998 * 109.47171 * 179.97438 * 21 19 18 23 23 C 1.52996 * 109.47340 * 179.97438 * 22 21 19 24 24 H 1.08997 * 110.43612 * 303.91306 * 23 22 21 25 25 C 1.54812 * 110.48965 * 181.22006 * 23 22 21 26 26 C 1.54997 * 102.09096 * 220.44312 * 25 23 22 27 27 O 1.44372 * 103.48976 * 37.02778 * 26 25 23 28 28 C 1.43745 * 106.97778 * 319.93404 * 27 26 25 29 29 C 1.46920 * 118.74137 * 306.38937 * 18 17 16 30 30 H 0.97006 * 120.00260 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.46933 * 335.55502 * 10 9 7 32 32 H 1.08999 * 109.47116 * 215.55082 * 10 9 7 33 33 H 1.08998 * 109.47237 * 175.00192 * 11 10 9 34 34 H 1.09000 * 109.47123 * 54.99887 * 11 10 9 35 35 H 0.96695 * 114.00147 * 180.02562 * 12 11 10 36 36 H 1.08997 * 109.45648 * 301.33403 * 15 13 9 37 37 H 1.08993 * 109.45753 * 61.29019 * 15 13 9 38 38 H 1.08998 * 109.50099 * 58.58521 * 16 15 13 39 39 H 1.09000 * 109.49155 * 178.65164 * 16 15 13 40 40 H 1.09000 * 109.58377 * 174.42629 * 17 16 15 41 41 H 1.08996 * 109.58437 * 294.71062 * 17 16 15 42 42 H 1.09004 * 109.46962 * 299.99699 * 21 19 18 43 43 H 1.08999 * 109.47224 * 59.99597 * 21 19 18 44 44 H 1.09004 * 109.47307 * 299.99947 * 22 21 19 45 45 H 1.08999 * 109.47000 * 59.99920 * 22 21 19 46 46 H 1.08996 * 110.90661 * 338.64729 * 25 23 22 47 47 H 1.09007 * 110.90486 * 102.24797 * 25 23 22 48 48 H 1.08995 * 110.61998 * 278.51768 * 26 25 23 49 49 H 1.09007 * 110.74528 * 155.59116 * 26 25 23 50 50 H 1.08999 * 109.87579 * 267.09369 * 28 27 26 51 51 H 1.08996 * 109.87724 * 145.94072 * 28 27 26 52 52 H 1.08997 * 109.58567 * 293.82654 * 29 18 17 53 53 H 1.09000 * 109.58633 * 173.39346 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0334 -1.2351 0.3436 9 7 1.3975 -2.3463 -0.4373 10 6 0.4199 -2.2836 -1.5267 11 6 1.1139 -2.5986 -2.8534 12 8 2.0706 -1.5778 -3.1447 13 6 1.7195 -3.6329 0.1847 14 1 1.1379 -4.4227 -0.2908 15 6 3.2121 -3.9243 0.0122 16 6 3.5432 -5.2835 0.6329 17 6 3.2278 -5.2464 2.1316 18 7 1.8317 -4.8252 2.3108 19 6 0.9784 -5.5696 3.0418 20 8 -0.1716 -5.2110 3.1826 21 6 1.4535 -6.8469 3.6851 22 6 0.2973 -7.4928 4.4512 23 6 0.7795 -8.7899 5.1038 24 1 1.1999 -9.4598 4.3538 25 6 -0.3814 -9.4796 5.8610 26 6 0.3221 -9.9787 7.1488 27 8 1.2595 -8.9231 7.4511 28 6 1.8190 -8.4878 6.2006 29 6 1.3835 -3.5772 1.6783 30 1 -0.4851 0.8401 0.0004 31 1 -0.0114 -1.2835 -1.5708 32 1 -0.3704 -3.0126 -1.3480 33 1 0.3720 -2.6394 -3.6509 34 1 1.6206 -3.5608 -2.7789 35 1 2.5495 -1.7127 -3.9739 36 1 3.4587 -3.9402 -1.0494 37 1 3.7934 -3.1472 0.5083 38 1 2.9439 -6.0579 0.1541 39 1 4.6015 -5.5011 0.4886 40 1 3.3678 -6.2392 2.5591 41 1 3.8918 -4.5382 2.6272 42 1 1.8070 -7.5321 2.9146 43 1 2.2674 -6.6251 4.3754 44 1 -0.0559 -6.8074 5.2217 45 1 -0.5168 -7.7145 3.7612 46 1 -1.1689 -8.7650 6.0999 47 1 -0.7784 -10.3160 5.2856 48 1 0.8464 -10.9157 6.9612 49 1 -0.3964 -10.0979 7.9598 50 1 2.7411 -9.0325 5.9975 51 1 2.0190 -7.4169 6.2368 52 1 1.8954 -2.7310 2.1366 53 1 0.3066 -3.4687 1.8067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479652110.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:51 Heat of formation + Delta-G solvation = -141.325642 kcal Electronic energy + Delta-G solvation = -31208.819189 eV Core-core repulsion = 27079.728591 eV Total energy + Delta-G solvation = -4129.090598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.27438 -40.31188 -39.04575 -37.70178 -36.26213 -35.47225 -33.85126 -32.82455 -32.01920 -31.13619 -29.58831 -28.91193 -26.59457 -26.02787 -24.89528 -23.76316 -23.15517 -22.17988 -21.49967 -21.05209 -19.73450 -18.41463 -18.23121 -18.01804 -17.58986 -16.97255 -16.82276 -16.62931 -16.39428 -16.00764 -15.78607 -15.56045 -15.15962 -15.06418 -14.74752 -14.56820 -14.33066 -14.15732 -14.04698 -13.81262 -13.51936 -13.42406 -13.10266 -13.07167 -12.86573 -12.74697 -12.57374 -12.46207 -12.28144 -12.20471 -11.95828 -11.85082 -11.76190 -11.64942 -11.59481 -11.56917 -11.45751 -11.27969 -10.75195 -10.63466 -10.54873 -10.41957 -9.58255 -8.52398 -7.76348 -5.30994 1.44625 1.49535 1.55253 1.70177 2.07848 2.56652 3.08522 3.35009 3.50905 3.56361 3.59521 3.79346 3.87837 3.99603 4.07354 4.10633 4.18467 4.25178 4.27856 4.33739 4.35160 4.46124 4.48436 4.52758 4.57494 4.67876 4.69164 4.71759 4.82653 4.87405 4.88342 4.93391 4.94356 4.97768 4.99432 5.01849 5.04783 5.12062 5.14052 5.23334 5.24912 5.37253 5.47986 5.58060 5.61914 5.73481 5.81955 6.00292 6.50802 6.57701 7.18338 7.24576 7.27369 7.93306 8.42136 9.22499 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.002439 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.343975 B =11478.348539 C =11854.119835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.042 4.042 3 Si 0.951 3.049 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.277 1.277 7 C -0.225 4.225 8 H 0.056 0.944 9 N -0.582 5.582 10 C 0.134 3.866 11 C 0.074 3.926 12 O -0.573 6.573 13 C 0.167 3.833 14 H 0.048 0.952 15 C -0.116 4.116 16 C -0.122 4.122 17 C 0.102 3.898 18 N -0.609 5.609 19 C 0.497 3.503 20 O -0.601 6.601 21 C -0.128 4.128 22 C -0.090 4.090 23 C -0.113 4.113 24 H 0.111 0.889 25 C -0.153 4.153 26 C 0.042 3.958 27 O -0.411 6.411 28 C 0.043 3.957 29 C 0.123 3.877 30 H 0.245 0.755 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.375 0.625 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.125 0.875 41 H 0.071 0.929 42 H 0.128 0.872 43 H 0.117 0.883 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.045 0.955 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.075 -23.507 4.840 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.237 4.237 3 Si 0.781 3.219 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.203 1.203 7 C -0.355 4.355 8 H 0.073 0.927 9 N -0.302 5.302 10 C 0.008 3.992 11 C -0.006 4.006 12 O -0.378 6.378 13 C 0.060 3.940 14 H 0.066 0.934 15 C -0.155 4.155 16 C -0.160 4.160 17 C -0.019 4.019 18 N -0.341 5.341 19 C 0.288 3.712 20 O -0.483 6.483 21 C -0.167 4.167 22 C -0.128 4.128 23 C -0.132 4.132 24 H 0.129 0.871 25 C -0.191 4.191 26 C -0.034 4.034 27 O -0.331 6.331 28 C -0.034 4.034 29 C -0.002 4.002 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.222 0.778 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.135 0.865 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.095 0.905 49 H 0.114 0.886 50 H 0.098 0.902 51 H 0.097 0.903 52 H 0.064 0.936 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.208 -22.857 5.698 24.634 hybrid contribution -0.210 1.542 -0.867 1.781 sum 6.998 -21.314 4.832 22.948 Atomic orbital electron populations 1.70101 1.06755 1.25452 1.54949 1.25623 0.95490 1.01160 1.01460 0.85591 0.77904 0.80431 0.77987 1.20906 1.22668 1.20331 1.18895 0.93509 0.86292 1.36816 0.92668 1.43903 1.48000 1.02601 1.35720 1.21020 0.90433 1.02004 0.85787 1.22782 0.90774 0.89631 0.97429 1.86773 1.56394 1.49700 1.44937 1.20780 0.95539 0.87563 0.90143 0.93382 1.21813 0.95951 0.97354 1.00412 1.21901 1.03237 0.96268 0.94630 1.22084 0.79877 1.02531 0.97441 1.48434 1.12501 1.23087 1.50091 1.21688 0.84847 0.86620 0.78064 1.90681 1.21071 1.73623 1.62917 1.21811 1.00595 0.92735 1.01533 1.21300 0.97128 0.95603 0.98815 1.22575 0.95845 0.96660 0.98106 0.87063 1.23228 0.97973 1.01159 0.96730 1.23713 0.91344 0.90813 0.97533 1.88845 1.59845 1.54466 1.29941 1.23475 0.96504 1.00677 0.82700 1.21755 0.98327 0.85054 0.95109 0.94540 0.91104 0.94838 0.93740 0.94265 0.77846 0.92688 0.93437 0.91125 0.87842 0.85739 0.91074 0.85392 0.86526 0.93606 0.92208 0.91780 0.88263 0.90485 0.88648 0.90231 0.90264 0.93635 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 11.32 21.65 0.25 -56.33 16 2 C -0.04 -2.40 4.93 84.86 0.42 -1.98 16 3 Si 0.95 47.11 29.61 68.60 2.03 49.14 16 4 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.22 -12.23 7.94 84.04 0.67 -11.56 16 8 H 0.06 3.00 6.86 -2.91 -0.02 2.98 16 9 N -0.58 -28.58 2.35 -677.56 -1.59 -30.17 16 10 C 0.13 6.46 5.57 86.38 0.48 6.94 16 11 C 0.07 2.82 7.39 71.98 0.53 3.35 16 12 O -0.57 -23.34 13.40 -148.98 -2.00 -25.33 16 13 C 0.17 6.77 2.78 45.08 0.13 6.90 16 14 H 0.05 1.92 7.87 -2.39 -0.02 1.90 16 15 C -0.12 -3.73 5.11 30.62 0.16 -3.57 16 16 C -0.12 -2.52 6.08 30.68 0.19 -2.34 16 17 C 0.10 2.05 6.34 86.36 0.55 2.60 16 18 N -0.61 -18.95 2.97 -818.90 -2.43 -21.38 16 19 C 0.50 15.57 7.70 87.66 0.67 16.24 16 20 O -0.60 -25.75 15.39 -3.01 -0.05 -25.79 16 21 C -0.13 -2.26 3.87 29.85 0.12 -2.14 16 22 C -0.09 -1.77 3.73 30.59 0.11 -1.65 16 23 C -0.11 -1.48 3.08 -9.80 -0.03 -1.51 16 24 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 25 C -0.15 -2.03 6.71 31.90 0.21 -1.82 16 26 C 0.04 0.56 7.72 72.67 0.56 1.12 16 27 O -0.41 -8.17 11.52 -148.98 -1.72 -9.88 16 28 C 0.04 0.62 6.93 72.36 0.50 1.12 16 29 C 0.12 5.22 5.76 86.37 0.50 5.72 16 30 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 31 H 0.07 4.04 5.34 -2.38 -0.01 4.03 16 32 H 0.03 1.57 8.04 -2.39 -0.02 1.55 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.38 10.62 9.12 -74.06 -0.68 9.94 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.05 1.70 7.03 -2.39 -0.02 1.68 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.12 1.38 5.93 -2.39 -0.01 1.36 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.13 1.40 7.69 -2.38 -0.02 1.38 16 43 H 0.12 1.51 6.67 -2.39 -0.02 1.50 16 44 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 45 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 46 H 0.06 1.06 7.87 -2.39 -0.02 1.05 16 47 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 50 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.08 1.24 6.70 -2.39 -0.02 1.22 16 52 H 0.05 2.16 7.50 -2.39 -0.02 2.14 16 53 H 0.04 1.97 7.01 -2.39 -0.02 1.96 16 Total: -1.00 -80.35 407.22 0.47 -79.88 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.22 Total: 22.43 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 5.76 Total: 17.44 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -3.78 Total: -107.88 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -3.76 Total: -61.01 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -80.35 0.47 -79.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479652110.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.450 kcal (2) G-P(sol) polarization free energy of solvation -80.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds