Wall clock time and date at job start Sat Apr 11 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00289 * 2 1 4 4 H 1.48497 * 109.47242 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47010 * 120.00248 * 3 2 1 6 6 H 1.48497 * 109.47254 * 239.99797 * 3 2 1 7 7 C 1.38819 * 119.99382 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99745 * 220.51182 * 7 2 1 9 9 N 1.36936 * 119.99939 * 40.52208 * 7 2 1 10 10 C 1.46500 * 120.00321 * 30.48477 * 9 7 2 11 11 C 1.52998 * 109.46639 * 86.19129 * 10 9 7 12 12 O 1.42901 * 109.47127 * 65.00109 * 11 10 9 13 13 C 1.46499 * 119.99603 * 210.49175 * 9 7 2 14 14 H 1.09001 * 109.49926 * 180.02562 * 13 9 7 15 15 C 1.53039 * 109.50040 * 59.99361 * 13 9 7 16 16 C 1.53040 * 109.53855 * 178.68212 * 15 13 9 17 17 C 1.53190 * 109.31258 * 61.36916 * 16 15 13 18 18 N 1.46931 * 108.77507 * 305.36530 * 17 16 15 19 19 C 1.34771 * 120.62825 * 233.60926 * 18 17 16 20 20 O 1.21278 * 120.00067 * 180.02562 * 19 18 17 21 21 C 1.50702 * 120.00303 * 359.97438 * 19 18 17 22 22 C 1.52999 * 109.47340 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47387 * 179.97438 * 22 21 19 24 24 H 1.09001 * 110.75277 * 54.30003 * 23 22 21 25 25 C 1.55305 * 110.84837 * 177.77111 * 23 22 21 26 26 C 1.55208 * 100.82619 * 152.18122 * 25 23 22 27 27 O 1.43644 * 105.25911 * 323.81758 * 26 25 23 28 28 C 1.43237 * 109.97390 * 24.28384 * 27 26 25 29 29 C 1.46923 * 118.73864 * 53.60893 * 18 17 16 30 30 H 0.96998 * 120.00593 * 185.53030 * 1 2 3 31 31 H 1.08995 * 109.46783 * 206.19082 * 10 9 7 32 32 H 1.09004 * 109.46906 * 326.19278 * 10 9 7 33 33 H 1.09004 * 109.46949 * 184.99916 * 11 10 9 34 34 H 1.08999 * 109.47294 * 304.99912 * 11 10 9 35 35 H 0.96699 * 113.99927 * 179.97438 * 12 11 10 36 36 H 1.09001 * 109.46437 * 298.70539 * 15 13 9 37 37 H 1.09001 * 109.45754 * 58.67889 * 15 13 9 38 38 H 1.09007 * 109.49539 * 181.31825 * 16 15 13 39 39 H 1.08995 * 109.50070 * 301.38270 * 16 15 13 40 40 H 1.09001 * 109.58778 * 65.15227 * 17 16 15 41 41 H 1.08996 * 109.59135 * 185.43248 * 17 16 15 42 42 H 1.09004 * 109.47115 * 299.99772 * 21 19 18 43 43 H 1.09000 * 109.47034 * 60.00124 * 21 19 18 44 44 H 1.08993 * 109.47275 * 300.00210 * 22 21 19 45 45 H 1.09000 * 109.47098 * 59.99988 * 22 21 19 46 46 H 1.08997 * 111.12082 * 270.24146 * 25 23 22 47 47 H 1.08999 * 111.12692 * 34.40587 * 25 23 22 48 48 H 1.08997 * 110.37315 * 204.80157 * 26 25 23 49 49 H 1.09003 * 110.21387 * 82.75170 * 26 25 23 50 50 H 1.08998 * 109.83169 * 238.77324 * 28 27 26 51 51 H 1.09003 * 109.90905 * 117.84662 * 28 27 26 52 52 H 1.09002 * 109.58616 * 186.60852 * 29 18 17 53 53 H 1.08997 * 109.58766 * 66.17824 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6963 -1.2124 7 6 2.0102 -1.2023 0.0005 8 1 2.8959 -1.3142 0.6082 9 7 1.5717 -2.2463 -0.7695 10 6 0.8661 -1.9838 -2.0263 11 6 1.8837 -1.8045 -3.1546 12 8 2.5843 -3.0323 -3.3636 13 6 1.8081 -3.6257 -0.3365 14 1 1.3916 -4.3143 -1.0717 15 6 1.1356 -3.8581 1.0184 16 6 1.3542 -5.3082 1.4563 17 6 2.8556 -5.5700 1.6105 18 7 3.5298 -5.2104 0.3555 19 6 4.3301 -6.0949 -0.2718 20 8 4.8813 -5.7859 -1.3069 21 6 4.5411 -7.4674 0.3135 22 6 5.4855 -8.2663 -0.5869 23 6 5.7002 -9.6595 0.0077 24 1 4.7458 -10.1565 0.1816 25 6 6.6111 -10.5183 -0.9113 26 6 7.2572 -11.4727 0.1282 27 8 7.4473 -10.6745 1.3073 28 6 6.5236 -9.5798 1.3112 29 6 3.3148 -3.8684 -0.2025 30 1 -0.4851 -0.8361 0.0810 31 1 0.2113 -2.8239 -2.2576 32 1 0.2710 -1.0760 -1.9261 33 1 1.3647 -1.5219 -4.0705 34 1 2.5934 -1.0230 -2.8831 35 1 3.2470 -2.9922 -4.0667 36 1 1.5689 -3.1859 1.7591 37 1 0.0668 -3.6624 0.9317 38 1 0.8551 -5.4793 2.4101 39 1 0.9424 -5.9813 0.7043 40 1 3.2508 -4.9624 2.4247 41 1 3.0222 -6.6250 1.8280 42 1 4.9788 -7.3752 1.3075 43 1 3.5834 -7.9832 0.3846 44 1 5.0483 -8.3585 -1.5810 45 1 6.4431 -7.7504 -0.6576 46 1 6.0217 -11.0706 -1.6432 47 1 7.3664 -9.9036 -1.4010 48 1 8.2157 -11.8402 -0.2383 49 1 6.5887 -12.3072 0.3400 50 1 7.0684 -8.6364 1.3473 51 1 5.8604 -9.6568 2.1728 52 1 3.7844 -3.8012 -1.1839 53 1 3.7473 -3.1220 0.4637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479652113.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:01 Heat of formation + Delta-G solvation = -144.142591 kcal Electronic energy + Delta-G solvation = -31417.585884 eV Core-core repulsion = 27288.373133 eV Total energy + Delta-G solvation = -4129.212750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28869 -40.32141 -39.14820 -37.83387 -36.47431 -35.52605 -33.91159 -32.91744 -32.04028 -31.26077 -29.67146 -28.73394 -26.66365 -25.91879 -24.91948 -23.68248 -23.12825 -22.38045 -21.61401 -21.19565 -19.79329 -18.90009 -18.25767 -18.15658 -17.72575 -17.01381 -16.75204 -16.61209 -16.41529 -15.87518 -15.64971 -15.63658 -15.33127 -15.05896 -14.83022 -14.72380 -14.43827 -14.21388 -14.01147 -13.99513 -13.83227 -13.67724 -13.41161 -12.99484 -12.71392 -12.58791 -12.54542 -12.41525 -12.29237 -12.12776 -11.98718 -11.93110 -11.82371 -11.68816 -11.61419 -11.55135 -11.49622 -11.36749 -10.82297 -10.73570 -10.44858 -10.27659 -9.65957 -8.84360 -8.24372 -5.30409 1.57204 1.61536 1.68934 1.81993 2.05099 2.64852 2.98506 3.07536 3.43202 3.49823 3.53896 3.59955 3.82170 3.97672 4.02004 4.05314 4.12146 4.21539 4.26243 4.29299 4.33345 4.38157 4.42331 4.45420 4.49547 4.55613 4.61497 4.66017 4.69756 4.80072 4.83541 4.87075 4.90825 4.93939 4.96311 4.99935 5.03807 5.08813 5.09317 5.14830 5.18509 5.22366 5.38786 5.43804 5.53245 5.56463 6.01590 6.08120 6.39196 6.55137 6.93503 7.09499 7.24738 7.81806 8.30392 8.91621 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.002497 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.512102 B =11211.151147 C =11615.786448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.052 4.052 3 Si 1.084 2.916 4 H -0.291 1.291 5 H -0.281 1.281 6 H -0.287 1.287 7 C -0.354 4.354 8 H 0.037 0.963 9 N -0.590 5.590 10 C 0.143 3.857 11 C 0.070 3.930 12 O -0.577 6.577 13 C 0.180 3.820 14 H 0.040 0.960 15 C -0.117 4.117 16 C -0.123 4.123 17 C 0.105 3.895 18 N -0.610 5.610 19 C 0.501 3.499 20 O -0.592 6.592 21 C -0.130 4.130 22 C -0.086 4.086 23 C -0.113 4.113 24 H 0.106 0.894 25 C -0.152 4.152 26 C 0.046 3.954 27 O -0.414 6.414 28 C 0.048 3.952 29 C 0.124 3.876 30 H 0.256 0.744 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.027 0.973 35 H 0.381 0.619 36 H 0.043 0.957 37 H 0.036 0.964 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.084 0.916 52 H 0.062 0.938 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.601 -21.416 1.520 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.252 4.252 3 Si 0.910 3.090 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.484 4.484 8 H 0.054 0.946 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.010 4.010 12 O -0.383 6.383 13 C 0.073 3.927 14 H 0.058 0.942 15 C -0.157 4.157 16 C -0.161 4.161 17 C -0.016 4.016 18 N -0.342 5.342 19 C 0.291 3.709 20 O -0.473 6.473 21 C -0.169 4.169 22 C -0.124 4.124 23 C -0.132 4.132 24 H 0.125 0.875 25 C -0.190 4.190 26 C -0.030 4.030 27 O -0.334 6.334 28 C -0.028 4.028 29 C 0.000 4.000 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.228 0.772 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.144 0.856 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.102 0.898 52 H 0.081 0.919 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.459 -19.830 1.586 21.246 hybrid contribution 0.250 -0.506 -0.739 0.930 sum 7.709 -20.336 0.847 21.765 Atomic orbital electron populations 1.70921 1.07981 1.29181 1.46254 1.26595 0.95750 1.03931 0.98963 0.83277 0.74688 0.73893 0.77119 1.21745 1.20666 1.21356 1.19569 1.07215 0.94042 1.27528 0.94576 1.43938 1.67369 1.00908 1.18861 1.20928 0.93036 0.99504 0.84846 1.22692 0.94997 0.85631 0.97679 1.86512 1.56446 1.35004 1.60362 1.20544 0.92642 0.85535 0.94022 0.94154 1.21826 0.99151 0.96886 0.97799 1.21900 0.96269 0.95099 1.02875 1.22016 0.91872 1.03214 0.84543 1.48360 1.46752 1.13725 1.25396 1.21579 0.77504 0.87960 0.83835 1.90661 1.50565 1.80093 1.25965 1.21798 1.03524 0.90175 1.01420 1.21202 0.99053 0.93549 0.98614 1.22732 1.00318 0.95661 0.94481 0.87541 1.23379 0.99266 0.97945 0.98411 1.23564 1.01543 0.93891 0.83993 1.88366 1.59509 1.41429 1.44085 1.23377 0.91440 0.89697 0.98273 1.21660 0.98011 0.82239 0.98131 0.93465 0.94436 0.92138 0.93001 0.95468 0.77195 0.93797 0.94482 0.88367 0.91418 0.91148 0.85633 0.86597 0.85975 0.91902 0.92795 0.88213 0.91088 0.89241 0.90899 0.91840 0.89779 0.91942 0.94196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.24 12.25 21.65 0.27 -51.98 16 2 C -0.05 -2.81 4.50 84.86 0.38 -2.43 16 3 Si 1.08 49.96 30.05 68.60 2.06 52.02 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.35 -19.05 8.04 84.04 0.68 -18.37 16 8 H 0.04 2.04 6.85 -2.91 -0.02 2.02 16 9 N -0.59 -28.80 2.24 -677.60 -1.52 -30.32 16 10 C 0.14 6.71 5.56 86.38 0.48 7.19 16 11 C 0.07 2.86 7.37 71.98 0.53 3.39 16 12 O -0.58 -22.72 12.94 -148.98 -1.93 -24.65 16 13 C 0.18 7.64 2.60 45.07 0.12 7.75 16 14 H 0.04 1.78 7.75 -2.39 -0.02 1.76 16 15 C -0.12 -4.38 5.11 30.62 0.16 -4.22 16 16 C -0.12 -3.05 6.08 30.67 0.19 -2.87 16 17 C 0.11 2.32 6.34 86.36 0.55 2.87 16 18 N -0.61 -18.93 2.97 -818.90 -2.43 -21.37 16 19 C 0.50 15.04 7.70 87.66 0.67 15.71 16 20 O -0.59 -23.47 15.39 -3.02 -0.05 -23.52 16 21 C -0.13 -2.24 3.92 29.85 0.12 -2.12 16 22 C -0.09 -1.55 3.90 30.59 0.12 -1.43 16 23 C -0.11 -1.45 2.99 -9.53 -0.03 -1.48 16 24 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 25 C -0.15 -1.89 6.64 32.14 0.21 -1.68 16 26 C 0.05 0.60 7.78 72.74 0.57 1.17 16 27 O -0.41 -7.88 11.36 -148.98 -1.69 -9.57 16 28 C 0.05 0.71 6.70 72.45 0.49 1.20 16 29 C 0.12 5.12 5.76 86.37 0.50 5.61 16 30 H 0.26 15.13 8.13 -92.71 -0.75 14.37 16 31 H 0.04 1.69 7.84 -2.39 -0.02 1.67 16 32 H 0.06 3.13 5.75 -2.39 -0.01 3.11 16 33 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.38 11.42 9.12 -74.06 -0.68 10.74 16 36 H 0.04 1.83 7.70 -2.39 -0.02 1.81 16 37 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.13 1.61 5.95 -2.39 -0.01 1.59 16 42 H 0.12 1.46 7.40 -2.38 -0.02 1.45 16 43 H 0.12 1.44 7.69 -2.39 -0.02 1.43 16 44 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 45 H 0.05 1.19 7.96 -2.39 -0.02 1.17 16 46 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 1.03 8.04 -2.39 -0.02 1.01 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.06 1.03 7.72 -2.39 -0.02 1.01 16 51 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.06 2.95 6.52 -2.39 -0.02 2.93 16 53 H 0.04 1.80 6.78 -2.39 -0.02 1.79 16 Total: -1.00 -73.12 408.37 0.66 -72.46 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.23 Total: 26.64 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.72 Total: 10.29 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -3.69 Total: -103.67 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -3.67 Total: -57.74 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.06 Total: 52.02 kcal Total: -73.12 0.66 -72.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479652113.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.687 kcal (2) G-P(sol) polarization free energy of solvation -73.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds