Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99912 * 2 1 4 4 H 1.48505 * 109.46984 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47008 * 299.99903 * 3 2 1 6 6 H 1.48496 * 109.47337 * 59.99969 * 3 2 1 7 7 C 1.38812 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00206 * 157.21683 * 7 2 1 9 9 N 1.36937 * 119.99873 * 337.22557 * 7 2 1 10 10 C 1.46500 * 120.00219 * 326.29368 * 9 7 2 11 11 C 1.53004 * 109.47111 * 264.41960 * 10 9 7 12 12 O 1.42899 * 109.47132 * 64.99650 * 11 10 9 13 13 C 1.46509 * 120.00199 * 146.29738 * 9 7 2 14 14 C 1.53073 * 109.43896 * 299.79222 * 13 9 7 15 15 C 1.53193 * 109.29599 * 181.23476 * 14 13 9 16 16 N 1.46925 * 108.89125 * 305.57966 * 15 14 13 17 17 C 1.34771 * 120.63253 * 233.55540 * 16 15 14 18 18 O 1.21287 * 119.99637 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00419 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47320 * 180.02562 * 19 17 16 21 21 C 1.53178 * 109.54464 * 294.82135 * 20 19 17 22 22 C 1.53103 * 109.15962 * 183.23942 * 21 20 19 23 23 O 1.42907 * 109.48153 * 57.47692 * 22 21 20 24 24 C 1.42898 * 114.10032 * 298.88493 * 23 22 21 25 25 C 1.53094 * 109.41246 * 61.16199 * 24 23 22 26 26 C 1.46930 * 118.73958 * 53.53222 * 16 15 14 27 27 C 1.53039 * 109.45765 * 59.99611 * 13 9 7 28 28 H 0.96999 * 119.99610 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46776 * 24.41464 * 10 9 7 30 30 H 1.08998 * 109.47384 * 144.41417 * 10 9 7 31 31 H 1.08999 * 109.46998 * 184.99724 * 11 10 9 32 32 H 1.09001 * 109.46864 * 304.99767 * 11 10 9 33 33 H 0.96704 * 113.99778 * 179.97438 * 12 11 10 34 34 H 1.08993 * 109.45813 * 179.97438 * 13 9 7 35 35 H 1.09006 * 109.38734 * 61.35831 * 14 13 9 36 36 H 1.08998 * 109.62399 * 301.25472 * 14 13 9 37 37 H 1.08994 * 109.58713 * 185.72417 * 15 14 13 38 38 H 1.08994 * 109.58501 * 65.43658 * 15 14 13 39 39 H 1.08995 * 109.47724 * 300.00333 * 19 17 16 40 40 H 1.09008 * 109.47182 * 60.00562 * 19 17 16 41 41 H 1.08994 * 109.54426 * 55.00290 * 20 19 17 42 42 H 1.08999 * 109.52593 * 303.06234 * 21 20 19 43 43 H 1.09005 * 109.51865 * 63.24598 * 21 20 19 44 44 H 1.09004 * 109.40421 * 297.49975 * 22 21 20 45 45 H 1.08997 * 109.48525 * 177.50558 * 22 21 20 46 46 H 1.08992 * 109.48225 * 301.17879 * 24 23 22 47 47 H 1.09003 * 109.48820 * 181.14617 * 24 23 22 48 48 H 1.09000 * 109.52132 * 182.47725 * 25 24 23 49 49 H 1.09006 * 109.57518 * 62.32574 * 25 24 23 50 50 H 1.09008 * 109.58281 * 66.18299 * 26 16 15 51 51 H 1.08997 * 109.58653 * 186.45664 * 26 16 15 52 52 H 1.08998 * 109.49752 * 58.68098 * 27 13 9 53 53 H 1.09000 * 109.52624 * 298.59744 * 27 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0271 -1.2388 -0.3616 9 7 1.4057 -2.3416 0.4601 10 6 0.4399 -2.2662 1.5591 11 6 1.1491 -2.5612 2.8824 12 8 2.1062 -1.5343 3.1491 13 6 1.7248 -3.6362 -0.1471 14 6 1.3636 -3.6041 -1.6343 15 6 1.6697 -4.9689 -2.2591 16 7 3.0706 -5.3152 -1.9828 17 6 3.9060 -5.6497 -2.9861 18 8 3.5036 -5.6664 -4.1301 19 6 5.3403 -6.0018 -2.6866 20 6 6.0657 -6.3392 -3.9909 21 6 5.4607 -7.6076 -4.6003 22 6 6.2447 -7.9827 -5.8608 23 8 7.6231 -8.1621 -5.5290 24 6 8.2528 -6.9935 -4.9999 25 6 7.5509 -6.5800 -3.7037 26 6 3.5436 -5.2894 -0.5920 27 6 3.2200 -3.9201 0.0136 28 1 -0.4849 0.8401 0.0004 29 1 0.0067 -1.2667 1.5941 30 1 -0.3506 -2.9995 1.3991 31 1 0.4159 -2.5928 3.6883 32 1 1.6573 -3.5232 2.8157 33 1 2.5945 -1.6565 3.9749 34 1 1.1510 -4.4202 0.3469 35 1 1.9533 -2.8350 -2.1333 36 1 0.3028 -3.3813 -1.7487 37 1 1.5107 -4.9216 -3.3364 38 1 1.0143 -5.7244 -1.8258 39 1 5.8302 -5.1541 -2.2077 40 1 5.3713 -6.8637 -2.0199 41 1 5.9594 -5.5113 -4.6918 42 1 5.5211 -8.4228 -3.8793 43 1 4.4176 -7.4256 -4.8592 44 1 6.1490 -7.1850 -6.5975 45 1 5.8467 -8.9093 -6.2743 46 1 8.1834 -6.1831 -5.7253 47 1 9.3014 -7.2075 -4.7931 48 1 8.0014 -5.6638 -3.3218 49 1 7.6548 -7.3731 -2.9631 50 1 3.0409 -6.0698 -0.0205 51 1 4.6205 -5.4562 -0.5691 52 1 3.4784 -3.9203 1.0725 53 1 3.7944 -3.1498 -0.5009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479750593.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -141.238120 kcal Electronic energy + Delta-G solvation = -31519.768155 eV Core-core repulsion = 27390.681352 eV Total energy + Delta-G solvation = -4129.086803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.40646 -40.12218 -39.01446 -37.64072 -36.22255 -35.57225 -33.80472 -32.37445 -31.97689 -31.81938 -29.95157 -29.23697 -26.55935 -25.10766 -24.52854 -24.42967 -23.60099 -22.26380 -21.49623 -20.95288 -19.87194 -18.43106 -18.16941 -17.79978 -17.03251 -16.92621 -16.90602 -16.66741 -16.52594 -16.06140 -15.62631 -15.58625 -15.34513 -15.07671 -14.88396 -14.68591 -14.38754 -14.13101 -13.86534 -13.70013 -13.56557 -13.28993 -13.10126 -13.03759 -12.96811 -12.76703 -12.71921 -12.55915 -12.33457 -12.21275 -12.07826 -11.92378 -11.80278 -11.62246 -11.54341 -11.47106 -11.18791 -11.10500 -10.70870 -10.59412 -10.38458 -10.35923 -9.56747 -8.49044 -7.74867 -5.26118 1.42750 1.46932 1.54205 1.68361 2.09713 2.56420 2.99365 3.35635 3.50768 3.59160 3.71135 3.83651 3.85616 3.96331 4.06435 4.14146 4.20892 4.26970 4.32588 4.37966 4.46320 4.47506 4.51240 4.59405 4.60316 4.64008 4.71627 4.74922 4.79570 4.82126 4.85367 4.89800 4.92879 4.94129 4.96327 5.02667 5.11774 5.13910 5.18585 5.23975 5.30137 5.43874 5.49410 5.60878 5.69429 5.76298 5.87575 6.28353 6.52080 6.53835 7.23410 7.24352 7.29763 7.99986 8.45694 9.23299 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016376 B = 0.002607 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.370242 B =10736.898238 C =11072.284628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.040 4.040 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.296 1.296 7 C -0.215 4.215 8 H 0.047 0.953 9 N -0.584 5.584 10 C 0.133 3.867 11 C 0.070 3.930 12 O -0.576 6.576 13 C 0.172 3.828 14 C -0.122 4.122 15 C 0.123 3.877 16 N -0.608 5.608 17 C 0.507 3.493 18 O -0.585 6.585 19 C -0.127 4.127 20 C -0.074 4.074 21 C -0.150 4.150 22 C 0.062 3.938 23 O -0.402 6.402 24 C 0.054 3.946 25 C -0.144 4.144 26 C 0.114 3.886 27 C -0.129 4.129 28 H 0.244 0.756 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.375 0.625 34 H 0.067 0.933 35 H 0.030 0.970 36 H 0.047 0.953 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.101 0.899 46 H 0.047 0.953 47 H 0.111 0.889 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.091 0.909 51 H 0.110 0.890 52 H 0.075 0.925 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.756 -17.882 -0.018 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.235 4.235 3 Si 0.773 3.227 4 H -0.198 1.198 5 H -0.228 1.228 6 H -0.223 1.223 7 C -0.346 4.346 8 H 0.064 0.936 9 N -0.304 5.304 10 C 0.007 3.993 11 C -0.009 4.009 12 O -0.381 6.381 13 C 0.066 3.934 14 C -0.162 4.162 15 C -0.001 4.001 16 N -0.341 5.341 17 C 0.297 3.703 18 O -0.466 6.466 19 C -0.166 4.166 20 C -0.093 4.093 21 C -0.187 4.187 22 C -0.015 4.015 23 O -0.321 6.321 24 C -0.022 4.022 25 C -0.182 4.182 26 C -0.008 4.008 27 C -0.169 4.169 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.221 0.779 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.074 0.926 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.066 0.934 47 H 0.129 0.871 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.109 0.891 51 H 0.128 0.872 52 H 0.094 0.906 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.301 -17.706 -1.197 21.593 hybrid contribution -0.278 1.767 0.414 1.836 sum 12.024 -15.939 -0.783 19.981 Atomic orbital electron populations 1.70098 1.06407 1.25076 1.55379 1.25451 0.95442 1.00652 1.02001 0.85597 0.79069 0.81928 0.76118 1.19775 1.22813 1.22277 1.18856 0.93684 0.86866 1.35235 0.93586 1.43953 1.48921 1.02250 1.35266 1.21026 0.90698 1.02071 0.85509 1.22851 0.90775 0.89662 0.97640 1.86775 1.55988 1.50108 1.45272 1.20538 0.94459 0.87573 0.90864 1.22130 0.99960 0.95560 0.98562 1.21467 0.82141 0.95847 1.00615 1.48290 1.10812 1.66751 1.08229 1.21330 0.89092 0.75732 0.84154 1.90620 1.78668 1.55024 1.22244 1.21792 0.89972 1.04877 0.99995 1.20924 0.94989 0.97660 0.95711 1.22269 1.00562 0.97516 0.98389 1.22596 0.81208 1.01910 0.95785 1.87882 1.24156 1.36491 1.83579 1.22742 0.97678 0.87625 0.94191 1.22225 0.93804 1.03353 0.98794 1.21967 1.01726 0.97150 0.79963 1.22176 0.97563 0.96255 1.00867 0.94671 0.91607 0.93803 0.93906 0.93726 0.77896 0.91515 0.95097 0.93458 0.91418 0.89935 0.87278 0.86204 0.92613 0.90915 0.91110 0.93828 0.88109 0.93450 0.87105 0.89279 0.89875 0.89081 0.87180 0.90600 0.94265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.51 11.36 21.65 0.25 -54.26 16 2 C -0.04 -2.26 4.90 84.86 0.42 -1.84 16 3 Si 0.94 46.82 29.61 68.60 2.03 48.85 16 4 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 6 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 7 C -0.22 -11.49 8.06 84.03 0.68 -10.82 16 8 H 0.05 2.53 6.87 -2.91 -0.02 2.51 16 9 N -0.58 -26.84 2.35 -677.81 -1.59 -28.43 16 10 C 0.13 5.92 5.57 86.38 0.48 6.40 16 11 C 0.07 2.47 7.39 71.98 0.53 3.01 16 12 O -0.58 -22.21 13.40 -148.98 -2.00 -24.20 16 13 C 0.17 6.27 2.59 45.03 0.12 6.38 16 14 C -0.12 -4.68 5.32 30.68 0.16 -4.51 16 15 C 0.12 3.76 6.43 86.36 0.56 4.32 16 16 N -0.61 -16.19 2.97 -818.92 -2.44 -18.62 16 17 C 0.51 13.73 7.44 87.66 0.65 14.38 16 18 O -0.58 -20.26 13.40 -3.05 -0.04 -20.31 16 19 C -0.13 -2.28 3.53 29.85 0.11 -2.18 16 20 C -0.07 -1.41 1.92 -10.67 -0.02 -1.43 16 21 C -0.15 -3.04 5.13 30.69 0.16 -2.89 16 22 C 0.06 1.20 6.84 72.02 0.49 1.69 16 23 O -0.40 -8.19 10.77 -148.98 -1.60 -9.79 16 24 C 0.05 0.84 6.84 72.01 0.49 1.33 16 25 C -0.14 -2.02 5.43 30.69 0.17 -1.85 16 26 C 0.11 2.38 6.34 86.36 0.55 2.93 16 27 C -0.13 -3.86 5.31 30.67 0.16 -3.70 16 28 H 0.24 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.07 3.56 5.35 -2.39 -0.01 3.54 16 30 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.37 9.86 9.12 -74.05 -0.68 9.18 16 34 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 35 H 0.03 1.40 7.70 -2.38 -0.02 1.38 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.31 7.00 -2.39 -0.02 2.29 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.11 1.69 7.69 -2.39 -0.02 1.68 16 40 H 0.12 1.51 7.94 -2.38 -0.02 1.49 16 41 H 0.06 1.33 7.96 -2.39 -0.02 1.31 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.80 6.05 -2.38 -0.01 1.79 16 44 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 51 H 0.11 1.62 5.93 -2.39 -0.01 1.61 16 52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 53 H 0.04 1.41 7.03 -2.39 -0.02 1.39 16 Total: -1.00 -73.12 402.92 0.52 -72.60 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.21 Total: 22.94 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.70 Total: 11.23 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -3.78 Total: -101.31 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -3.64 Total: -54.30 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -73.12 0.52 -72.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479750593.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.640 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds