Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48496 * 109.47254 * 179.72344 * 3 2 1 5 5 H 1.48497 * 109.46775 * 299.72278 * 3 2 1 6 6 H 1.48496 * 109.46943 * 59.72019 * 3 2 1 7 7 C 1.38816 * 119.99605 * 179.72140 * 2 1 3 8 8 H 1.08011 * 119.99450 * 205.85059 * 7 2 1 9 9 N 1.36937 * 120.00353 * 25.85418 * 7 2 1 10 10 C 1.46927 * 120.62908 * 27.52648 * 9 7 2 11 11 C 1.53624 * 108.54286 * 126.36713 * 10 9 7 12 12 C 1.53036 * 109.24299 * 54.85719 * 11 10 9 13 13 C 1.52999 * 109.46215 * 178.48992 * 12 11 10 14 14 C 1.52999 * 109.46968 * 295.06736 * 13 12 11 15 15 N 1.46499 * 109.47258 * 180.02562 * 14 13 12 16 16 C 1.34777 * 120.00101 * 179.97438 * 15 14 13 17 17 O 1.21282 * 119.99955 * 0.02562 * 16 15 14 18 18 C 1.50695 * 119.99922 * 179.97438 * 16 15 14 19 19 O 1.42898 * 109.47338 * 179.97438 * 18 16 15 20 20 C 1.42903 * 114.00117 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.46932 * 180.02562 * 20 19 18 22 22 H 1.08994 * 110.33585 * 305.70789 * 21 20 19 23 23 C 1.54478 * 110.37064 * 183.45264 * 21 20 19 24 24 C 1.54516 * 104.06016 * 217.18960 * 23 21 20 25 25 C 1.54478 * 104.06316 * 0.02562 * 24 23 21 26 26 O 1.44432 * 110.37068 * 67.95236 * 21 20 19 27 27 C 1.53044 * 109.53619 * 298.50863 * 12 11 10 28 28 C 1.46924 * 120.63190 * 207.80063 * 9 7 2 29 29 H 0.97002 * 119.99443 * 184.33119 * 1 2 3 30 30 H 1.09003 * 109.58185 * 246.20025 * 10 9 7 31 31 H 1.09001 * 109.58565 * 6.62155 * 10 9 7 32 32 H 1.08999 * 109.63571 * 294.86325 * 11 10 9 33 33 H 1.09001 * 109.45321 * 174.73853 * 11 10 9 34 34 H 1.08999 * 109.45305 * 58.51573 * 12 11 10 35 35 H 1.08999 * 109.46639 * 55.06446 * 13 12 11 36 36 H 1.09002 * 109.47040 * 175.06502 * 13 12 11 37 37 H 1.09003 * 109.46809 * 299.99978 * 14 13 12 38 38 H 1.09001 * 109.47507 * 59.99456 * 14 13 12 39 39 H 0.97004 * 119.99803 * 359.97438 * 15 14 13 40 40 H 1.09003 * 109.47622 * 300.00198 * 18 16 15 41 41 H 1.09006 * 109.47359 * 60.00265 * 18 16 15 42 42 H 1.08993 * 109.47420 * 299.99963 * 20 19 18 43 43 H 1.08996 * 109.46774 * 60.00711 * 20 19 18 44 44 H 1.08998 * 110.51284 * 335.83561 * 23 21 20 45 45 H 1.08992 * 110.51050 * 98.54909 * 23 21 20 46 46 H 1.09007 * 110.50418 * 118.64676 * 24 23 21 47 47 H 1.08993 * 110.51359 * 241.21883 * 24 23 21 48 48 H 1.09000 * 110.37410 * 142.80962 * 25 24 23 49 49 H 1.08999 * 110.36681 * 265.03277 * 25 24 23 50 50 H 1.09001 * 109.49789 * 301.41555 * 27 12 11 51 51 H 1.08998 * 109.52341 * 181.33303 * 27 12 11 52 52 H 1.09005 * 109.58361 * 353.37464 * 28 9 7 53 53 H 1.08997 * 109.58834 * 113.65474 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0068 5 1 1.8965 2.3934 -1.2159 6 1 1.8863 2.3993 1.2090 7 6 2.0102 -1.2022 0.0058 8 1 3.0093 -1.2470 0.4140 9 7 1.4283 -2.3313 -0.5058 10 6 0.4086 -2.2362 -1.5593 11 6 0.8366 -3.1270 -2.7354 12 6 1.0839 -4.5492 -2.2271 13 6 1.4741 -5.4495 -3.4009 14 6 0.2955 -5.5635 -4.3699 15 7 0.6689 -6.4260 -5.4937 16 6 -0.2184 -6.6725 -6.4778 17 8 -1.3257 -6.1798 -6.4333 18 6 0.1659 -7.5593 -7.6340 19 8 -0.9352 -7.6669 -8.5384 20 6 -0.6741 -8.4903 -9.6768 21 6 -1.9149 -8.5324 -10.5711 22 1 -2.7858 -8.8467 -9.9960 23 6 -1.6855 -9.4862 -11.7644 24 6 -2.4003 -8.7899 -12.9442 25 6 -2.9764 -7.4976 -12.3242 26 8 -2.1477 -7.2385 -11.1691 27 6 2.2159 -4.5350 -1.1972 28 6 1.8075 -3.6604 -0.0076 29 1 -0.4849 -0.8377 0.0634 30 1 -0.5513 -2.5760 -1.1703 31 1 0.3242 -1.2023 -1.8939 32 1 1.7521 -2.7345 -3.1779 33 1 0.0466 -3.1413 -3.4863 34 1 0.1751 -4.9317 -1.7624 35 1 2.3306 -5.0191 -3.9197 36 1 1.7351 -6.4399 -3.0281 37 1 -0.5611 -5.9938 -3.8510 38 1 0.0344 -4.5730 -4.7427 39 1 1.5547 -6.8198 -5.5294 40 1 1.0223 -7.1289 -8.1532 41 1 0.4274 -8.5497 -7.2611 42 1 0.1643 -8.0785 -10.2385 43 1 -0.4295 -9.4998 -9.3465 44 1 -0.6204 -9.5902 -11.9709 45 1 -2.1342 -10.4596 -11.5669 46 1 -1.6884 -8.5499 -13.7340 47 1 -3.2007 -9.4203 -13.3315 48 1 -2.9082 -6.6731 -13.0339 49 1 -4.0119 -7.6513 -12.0206 50 1 3.1184 -4.1292 -1.6542 51 1 2.4077 -5.5511 -0.8528 52 1 2.6466 -3.5665 0.6819 53 1 0.9603 -4.1130 0.5075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482052475.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -149.884531 kcal Electronic energy + Delta-G solvation = -29111.155251 eV Core-core repulsion = 24981.693511 eV Total energy + Delta-G solvation = -4129.461740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94044 -40.40179 -39.69160 -38.36420 -36.82761 -35.26431 -33.18167 -33.09821 -31.89629 -31.57531 -30.46386 -28.61794 -26.62698 -25.95810 -24.58701 -23.67672 -22.94276 -22.21243 -22.05104 -21.54981 -20.67703 -19.37617 -18.37787 -18.02405 -17.59882 -17.10799 -16.78336 -16.60129 -16.51057 -16.13662 -16.11479 -15.80089 -15.39909 -15.17020 -15.10780 -15.03990 -14.61984 -14.50587 -14.27427 -13.90814 -13.67862 -13.36664 -13.15046 -12.87010 -12.74118 -12.71969 -12.65826 -12.49758 -12.21670 -12.21149 -12.16391 -12.01852 -11.87763 -11.79648 -11.57426 -11.49625 -11.14276 -11.11130 -10.85470 -10.77491 -10.73377 -10.45727 -10.13470 -8.92142 -8.28035 -5.39791 1.54822 1.56410 1.64997 1.78578 1.80806 2.64872 2.87384 2.96126 3.21031 3.55645 3.64516 3.73022 3.76849 3.86312 3.88708 3.98826 4.05078 4.14649 4.15623 4.22532 4.26918 4.29985 4.35547 4.41903 4.43513 4.49733 4.57076 4.58324 4.61010 4.66541 4.74291 4.79615 4.87428 4.93784 4.94240 4.98755 5.02668 5.07558 5.14768 5.16096 5.25297 5.26044 5.26644 5.35954 5.39634 5.60851 5.84009 5.87167 6.07298 6.37396 6.55782 7.06608 7.23260 7.78826 8.24101 8.98393 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021570 B = 0.001527 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.806977 B =18334.046048 C =19184.278910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.080 4.080 3 Si 1.120 2.880 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.356 4.356 8 H 0.052 0.948 9 N -0.619 5.619 10 C 0.154 3.846 11 C -0.120 4.120 12 C -0.072 4.072 13 C -0.104 4.104 14 C 0.121 3.879 15 N -0.710 5.710 16 C 0.502 3.498 17 O -0.583 6.583 18 C 0.048 3.952 19 O -0.400 6.400 20 C 0.063 3.937 21 C 0.064 3.936 22 H 0.064 0.936 23 C -0.140 4.140 24 C -0.150 4.150 25 C 0.030 3.970 26 O -0.401 6.401 27 C -0.111 4.111 28 C 0.137 3.863 29 H 0.253 0.747 30 H -0.002 1.002 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.421 0.579 40 H 0.108 0.892 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.059 0.941 50 H 0.057 0.943 51 H 0.089 0.911 52 H 0.049 0.951 53 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.845 -26.861 -25.305 37.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.275 4.275 3 Si 0.944 3.056 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.485 4.485 8 H 0.069 0.931 9 N -0.344 5.344 10 C 0.028 3.972 11 C -0.159 4.159 12 C -0.091 4.091 13 C -0.142 4.142 14 C -0.003 4.003 15 N -0.364 5.364 16 C 0.289 3.711 17 O -0.462 6.462 18 C -0.031 4.031 19 O -0.319 6.319 20 C -0.012 4.012 21 C 0.006 3.994 22 H 0.082 0.918 23 C -0.177 4.177 24 C -0.187 4.187 25 C -0.047 4.047 26 O -0.321 6.321 27 C -0.150 4.150 28 C 0.012 3.988 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.259 0.741 40 H 0.126 0.874 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.117 0.883 46 H 0.102 0.898 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.107 0.893 52 H 0.067 0.933 53 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 2.835 -24.580 -25.205 35.320 hybrid contribution -0.049 -1.401 0.476 1.481 sum 2.786 -25.982 -24.729 35.976 Atomic orbital electron populations 1.70859 1.07693 1.29252 1.50950 1.27242 0.96543 1.05012 0.98747 0.82807 0.74323 0.71850 0.76615 1.19548 1.21527 1.21758 1.20288 0.97834 0.89829 1.40579 0.93056 1.44406 1.47149 1.02190 1.40649 1.20887 0.89707 0.97846 0.88722 1.22084 1.00648 0.96167 0.97015 1.20907 0.98585 0.93883 0.95706 1.21686 0.96894 1.01090 0.94533 1.21330 0.98317 0.93742 0.86878 1.45736 1.17597 1.50789 1.22328 1.21072 0.84476 0.81477 0.84103 1.90741 1.23962 1.52800 1.78660 1.22350 0.90576 1.00715 0.89424 1.88036 1.37678 1.71229 1.34992 1.22868 0.96995 0.95670 0.85715 1.23220 0.97526 0.84031 0.94602 0.91767 1.22918 1.03161 0.99022 0.92618 1.22942 1.01317 0.96078 0.98409 1.23634 0.94504 0.99075 0.87440 1.89244 1.71046 1.28903 1.42867 1.21877 0.97680 0.99755 0.95709 1.21114 0.96940 0.85428 0.95301 0.93749 0.98414 0.94384 0.92706 0.92057 0.92183 0.90158 0.88507 0.92736 0.93333 0.74112 0.87406 0.86339 0.91311 0.88439 0.89005 0.88270 0.89758 0.88738 0.88563 0.92270 0.92388 0.89274 0.93268 0.97183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.06 12.46 21.65 0.27 -59.79 16 2 C -0.08 -4.69 4.66 84.86 0.40 -4.29 16 3 Si 1.12 52.66 29.99 68.60 2.06 54.72 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 6 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 7 C -0.36 -20.54 9.49 84.03 0.80 -19.74 16 8 H 0.05 2.95 7.95 -2.90 -0.02 2.93 16 9 N -0.62 -32.05 2.85 -698.24 -1.99 -34.04 16 10 C 0.15 7.65 4.72 86.51 0.41 8.06 16 11 C -0.12 -4.51 5.16 30.82 0.16 -4.35 16 12 C -0.07 -2.12 2.15 -10.77 -0.02 -2.14 16 13 C -0.10 -2.10 4.80 30.59 0.15 -1.96 16 14 C 0.12 2.87 5.43 86.38 0.47 3.33 16 15 N -0.71 -12.85 5.56 -463.06 -2.57 -15.42 16 16 C 0.50 12.16 7.91 87.66 0.69 12.86 16 17 O -0.58 -21.79 16.50 16.00 0.26 -21.52 16 18 C 0.05 0.73 6.42 71.23 0.46 1.18 16 19 O -0.40 -9.11 9.88 -127.67 -1.26 -10.37 16 20 C 0.06 0.86 5.54 71.98 0.40 1.26 16 21 C 0.06 1.00 3.57 31.10 0.11 1.11 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 23 C -0.14 -1.06 6.63 31.61 0.21 -0.85 16 24 C -0.15 -1.18 7.09 31.61 0.22 -0.95 16 25 C 0.03 0.42 7.63 72.48 0.55 0.97 16 26 O -0.40 -8.95 11.35 -148.60 -1.69 -10.63 16 27 C -0.11 -3.42 5.36 30.67 0.16 -3.26 16 28 C 0.14 5.73 6.51 86.36 0.56 6.30 16 29 H 0.25 16.45 6.69 -92.71 -0.62 15.82 16 30 H 0.00 -0.11 7.87 -2.39 -0.02 -0.13 16 31 H 0.04 2.16 6.31 -2.39 -0.02 2.14 16 32 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 2.18 6.50 -2.39 -0.02 2.16 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.41 6.53 -2.39 -0.02 1.40 16 39 H 0.42 3.84 8.47 -92.71 -0.79 3.05 16 40 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.09 0.46 7.87 -2.39 -0.02 0.44 16 45 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 47 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 52 H 0.05 2.05 7.93 -2.38 -0.02 2.04 16 53 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -87.05 415.65 1.05 -86.00 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.24 Total: 13.53 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.73 Total: -2.47 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -4.29 Total: -109.25 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -2.68 Total: -42.53 kcal Atomic # 14 Polarization: 52.66 SS G_CDS: 2.06 Total: 54.72 kcal Total: -87.05 1.05 -86.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482052475.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.887 kcal (2) G-P(sol) polarization free energy of solvation -87.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds