Wall clock time and date at job start Sat Apr 11 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00034 * 2 1 4 4 H 1.48496 * 109.47254 * 179.72344 * 3 2 1 5 5 H 1.48497 * 109.46775 * 299.72278 * 3 2 1 6 6 H 1.48496 * 109.46943 * 59.72019 * 3 2 1 7 7 C 1.38816 * 119.99605 * 179.72140 * 2 1 3 8 8 H 1.08011 * 119.99450 * 205.85059 * 7 2 1 9 9 N 1.36937 * 120.00353 * 25.85418 * 7 2 1 10 10 C 1.46927 * 120.62908 * 27.52648 * 9 7 2 11 11 C 1.53624 * 108.54286 * 126.36713 * 10 9 7 12 12 C 1.53036 * 109.24299 * 54.85719 * 11 10 9 13 13 C 1.52998 * 109.45034 * 178.49560 * 12 11 10 14 14 C 1.52999 * 109.46984 * 295.06089 * 13 12 11 15 15 N 1.46505 * 109.46812 * 180.02562 * 14 13 12 16 16 C 1.34770 * 119.99825 * 180.02562 * 15 14 13 17 17 O 1.21288 * 119.99997 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00276 * 179.97438 * 16 15 14 19 19 O 1.42898 * 109.47522 * 179.97438 * 18 16 15 20 20 C 1.42895 * 114.00304 * 179.97438 * 19 18 16 21 21 C 1.52995 * 109.47513 * 180.02562 * 20 19 18 22 22 H 1.08999 * 109.87051 * 53.99066 * 21 20 19 23 23 C 1.54093 * 109.88326 * 175.00291 * 21 20 19 24 24 C 1.54808 * 104.19215 * 121.45649 * 23 21 20 25 25 C 1.54995 * 102.09198 * 20.87760 * 24 23 21 26 26 O 1.43748 * 109.87916 * 292.83380 * 21 20 19 27 27 C 1.53044 * 109.53619 * 298.50863 * 12 11 10 28 28 C 1.46924 * 120.63190 * 207.80063 * 9 7 2 29 29 H 0.97002 * 119.99443 * 184.33119 * 1 2 3 30 30 H 1.09003 * 109.58185 * 246.20025 * 10 9 7 31 31 H 1.09001 * 109.58565 * 6.62155 * 10 9 7 32 32 H 1.08999 * 109.63571 * 294.86325 * 11 10 9 33 33 H 1.08997 * 109.42603 * 174.72081 * 11 10 9 34 34 H 1.08999 * 109.46296 * 58.52444 * 12 11 10 35 35 H 1.09003 * 109.47233 * 55.05995 * 13 12 11 36 36 H 1.08999 * 109.47142 * 175.05505 * 13 12 11 37 37 H 1.08995 * 109.46740 * 299.99482 * 14 13 12 38 38 H 1.08990 * 109.47401 * 59.99739 * 14 13 12 39 39 H 0.96997 * 119.99965 * 359.97438 * 15 14 13 40 40 H 1.08994 * 109.47043 * 300.00072 * 18 16 15 41 41 H 1.09005 * 109.46721 * 60.00126 * 18 16 15 42 42 H 1.09001 * 109.47349 * 300.00793 * 20 19 18 43 43 H 1.09008 * 109.47023 * 60.00353 * 20 19 18 44 44 H 1.09006 * 110.49173 * 240.13166 * 23 21 20 45 45 H 1.09004 * 110.48712 * 2.77852 * 23 21 20 46 46 H 1.08995 * 110.91332 * 139.07949 * 24 23 21 47 47 H 1.09002 * 110.90287 * 262.64859 * 24 23 21 48 48 H 1.09007 * 110.61307 * 81.48229 * 25 24 23 49 49 H 1.08999 * 110.61929 * 204.47307 * 25 24 23 50 50 H 1.09001 * 109.49789 * 301.41555 * 27 12 11 51 51 H 1.08998 * 109.52341 * 181.33303 * 27 12 11 52 52 H 1.09005 * 109.58361 * 353.37464 * 28 9 7 53 53 H 1.08997 * 109.58834 * 113.65474 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0068 5 1 1.8965 2.3934 -1.2159 6 1 1.8863 2.3993 1.2090 7 6 2.0102 -1.2022 0.0058 8 1 3.0093 -1.2470 0.4140 9 7 1.4283 -2.3313 -0.5058 10 6 0.4086 -2.2362 -1.5593 11 6 0.8366 -3.1270 -2.7354 12 6 1.0839 -4.5492 -2.2271 13 6 1.4742 -5.4492 -3.4011 14 6 0.2956 -5.5632 -4.3701 15 7 0.6692 -6.4255 -5.4940 16 6 -0.2176 -6.6711 -6.4787 17 8 -1.3251 -6.1786 -6.4341 18 6 0.1668 -7.5577 -7.6351 19 8 -0.9339 -7.6643 -8.5401 20 6 -0.6728 -8.4873 -9.6786 21 6 -1.9130 -8.5284 -10.5736 22 1 -2.2254 -7.5138 -10.8206 23 6 -1.6019 -9.3099 -11.8647 24 6 -2.6308 -10.4666 -11.8655 25 6 -3.7281 -9.9257 -10.9138 26 8 -2.9782 -9.2209 -9.9012 27 6 2.2159 -4.5350 -1.1972 28 6 1.8075 -3.6604 -0.0076 29 1 -0.4849 -0.8377 0.0634 30 1 -0.5513 -2.5760 -1.1703 31 1 0.3242 -1.2023 -1.8939 32 1 1.7521 -2.7345 -3.1779 33 1 0.0462 -3.1412 -3.4858 34 1 0.1752 -4.9319 -1.7625 35 1 2.3307 -5.0187 -3.9199 36 1 1.7354 -6.4396 -3.0285 37 1 -0.5608 -5.9938 -3.8513 38 1 0.0345 -4.5728 -4.7427 39 1 1.5550 -6.8191 -5.5298 40 1 1.0235 -7.1274 -8.1536 41 1 0.4275 -8.5483 -7.2624 42 1 0.1663 -8.0758 -10.2397 43 1 -0.4288 -9.4972 -9.3487 44 1 -1.7422 -8.6740 -12.7389 45 1 -0.5857 -9.7032 -11.8371 46 1 -3.0303 -10.6312 -12.8661 47 1 -2.1883 -11.3809 -11.4701 48 1 -4.3932 -9.2435 -11.4434 49 1 -4.2919 -10.7472 -10.4719 50 1 3.1184 -4.1292 -1.6542 51 1 2.4077 -5.5511 -0.8528 52 1 2.6466 -3.5665 0.6819 53 1 0.9603 -4.1130 0.5075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482052476.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:18 Heat of formation + Delta-G solvation = -149.709084 kcal Electronic energy + Delta-G solvation = -29118.600607 eV Core-core repulsion = 24989.146475 eV Total energy + Delta-G solvation = -4129.454132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94666 -40.43641 -39.69150 -38.34730 -36.82748 -35.26456 -33.20913 -33.10986 -31.87091 -31.57446 -30.46297 -28.61451 -26.61287 -25.90309 -24.58590 -23.67670 -23.01054 -22.21429 -22.06641 -21.54460 -20.67678 -19.37525 -18.40706 -18.01701 -17.55847 -17.17644 -16.81949 -16.55667 -16.50984 -16.12997 -16.06390 -15.79167 -15.39672 -15.16966 -15.12310 -15.01888 -14.53309 -14.50379 -14.28781 -13.96229 -13.67743 -13.36710 -13.14688 -12.87050 -12.81999 -12.71830 -12.57390 -12.49639 -12.31218 -12.20812 -12.08145 -12.01874 -11.87521 -11.79631 -11.57607 -11.57433 -11.14201 -11.11132 -10.85241 -10.73074 -10.67797 -10.45673 -10.13631 -8.92150 -8.27974 -5.39757 1.54800 1.56583 1.65157 1.78992 1.81023 2.65043 2.86277 2.97971 3.21134 3.55658 3.61080 3.72244 3.76733 3.86304 3.90733 3.95603 4.05055 4.14351 4.17549 4.21615 4.26225 4.30302 4.35645 4.42428 4.43424 4.46516 4.58427 4.60929 4.62738 4.66426 4.74277 4.79441 4.89627 4.93742 4.95465 4.98629 5.02679 5.05975 5.14767 5.18511 5.25211 5.25928 5.26586 5.35920 5.39479 5.60767 5.84072 5.91618 6.11197 6.37394 6.55809 7.06612 7.23203 7.78893 8.24155 8.98433 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025705 B = 0.001484 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.004147 B =18869.123733 C =19289.007344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.079 4.079 3 Si 1.120 2.880 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.356 4.356 8 H 0.052 0.948 9 N -0.619 5.619 10 C 0.154 3.846 11 C -0.120 4.120 12 C -0.072 4.072 13 C -0.104 4.104 14 C 0.121 3.879 15 N -0.710 5.710 16 C 0.502 3.498 17 O -0.583 6.583 18 C 0.048 3.952 19 O -0.400 6.400 20 C 0.059 3.941 21 C 0.066 3.934 22 H 0.060 0.940 23 C -0.141 4.141 24 C -0.149 4.149 25 C 0.031 3.969 26 O -0.402 6.402 27 C -0.111 4.111 28 C 0.137 3.863 29 H 0.253 0.747 30 H -0.003 1.003 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.421 0.579 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.098 0.902 50 H 0.058 0.942 51 H 0.088 0.912 52 H 0.049 0.951 53 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 -26.168 -26.067 37.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.275 4.275 3 Si 0.944 3.056 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.485 4.485 8 H 0.069 0.931 9 N -0.344 5.344 10 C 0.028 3.972 11 C -0.159 4.159 12 C -0.091 4.091 13 C -0.142 4.142 14 C -0.003 4.003 15 N -0.364 5.364 16 C 0.289 3.711 17 O -0.462 6.462 18 C -0.031 4.031 19 O -0.319 6.319 20 C -0.017 4.017 21 C 0.008 3.992 22 H 0.078 0.922 23 C -0.179 4.179 24 C -0.186 4.186 25 C -0.046 4.046 26 O -0.322 6.322 27 C -0.150 4.150 28 C 0.012 3.988 29 H 0.062 0.938 30 H 0.015 0.985 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.259 0.741 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.116 0.884 50 H 0.077 0.923 51 H 0.107 0.893 52 H 0.067 0.933 53 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 3.476 -24.088 -25.816 35.479 hybrid contribution 0.012 -1.346 0.442 1.417 sum 3.488 -25.434 -25.374 36.095 Atomic orbital electron populations 1.70859 1.07699 1.29247 1.50955 1.27248 0.96536 1.05017 0.98733 0.82805 0.74322 0.71832 0.76622 1.19538 1.21482 1.21789 1.20290 0.97835 0.89822 1.40594 0.93053 1.44407 1.47149 1.02175 1.40658 1.20890 0.89681 0.97868 0.88730 1.22080 1.00686 0.96091 0.97012 1.20908 0.98552 0.93942 0.95708 1.21685 0.96920 1.01050 0.94541 1.21329 0.98272 0.93782 0.86883 1.45734 1.17609 1.50828 1.22275 1.21075 0.84459 0.81430 0.84172 1.90743 1.23861 1.52812 1.78740 1.22345 0.90704 1.00414 0.89612 1.88041 1.37949 1.70633 1.35279 1.23019 0.97040 0.95083 0.86508 1.22946 0.87419 0.96513 0.92288 0.92207 1.22937 1.01783 0.97235 0.95947 1.23137 0.95687 0.98607 1.01192 1.23808 0.95037 0.96042 0.89667 1.88992 1.43819 1.66610 1.32747 1.21875 0.97700 0.99725 0.95713 1.21113 0.96925 0.85451 0.95304 0.93761 0.98473 0.94339 0.92611 0.92018 0.92277 0.90031 0.88632 0.92922 0.93153 0.74118 0.86683 0.87169 0.88873 0.91231 0.88848 0.88237 0.88147 0.89910 0.91953 0.88378 0.92321 0.89343 0.93261 0.97242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.00 12.46 21.65 0.27 -59.73 16 2 C -0.08 -4.67 4.66 84.86 0.40 -4.28 16 3 Si 1.12 52.50 29.99 68.60 2.06 54.56 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 6 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.36 -20.52 9.49 84.03 0.80 -19.72 16 8 H 0.05 2.95 7.95 -2.90 -0.02 2.92 16 9 N -0.62 -32.03 2.85 -698.24 -1.99 -34.02 16 10 C 0.15 7.63 4.72 86.51 0.41 8.04 16 11 C -0.12 -4.48 5.16 30.82 0.16 -4.32 16 12 C -0.07 -2.13 2.15 -10.77 -0.02 -2.15 16 13 C -0.10 -2.11 4.80 30.59 0.15 -1.97 16 14 C 0.12 2.88 5.43 86.38 0.47 3.35 16 15 N -0.71 -12.96 5.56 -463.07 -2.57 -15.53 16 16 C 0.50 12.27 7.91 87.66 0.69 12.96 16 17 O -0.58 -21.93 16.50 15.98 0.26 -21.66 16 18 C 0.05 0.74 6.42 71.24 0.46 1.19 16 19 O -0.40 -9.24 9.87 -126.82 -1.25 -10.49 16 20 C 0.06 0.82 5.39 71.98 0.39 1.21 16 21 C 0.07 1.04 3.71 30.96 0.11 1.16 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 C -0.14 -1.03 6.64 31.58 0.21 -0.82 16 24 C -0.15 -1.06 7.15 31.89 0.23 -0.83 16 25 C 0.03 0.40 7.72 72.66 0.56 0.96 16 26 O -0.40 -8.80 11.18 -147.43 -1.65 -10.45 16 27 C -0.11 -3.43 5.36 30.67 0.16 -3.27 16 28 C 0.14 5.74 6.51 86.36 0.56 6.31 16 29 H 0.25 16.43 6.69 -92.71 -0.62 15.81 16 30 H 0.00 -0.14 7.87 -2.39 -0.02 -0.16 16 31 H 0.04 2.17 6.31 -2.39 -0.02 2.16 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 2.18 6.50 -2.39 -0.02 2.16 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.05 1.45 6.53 -2.39 -0.02 1.44 16 39 H 0.42 3.90 8.47 -92.71 -0.79 3.11 16 40 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 45 H 0.10 0.36 7.70 -2.38 -0.02 0.34 16 46 H 0.10 0.34 8.14 -2.39 -0.02 0.33 16 47 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 53 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -87.03 415.44 1.10 -85.93 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.24 Total: 13.57 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.73 Total: -2.18 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -4.29 Total: -109.28 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -2.64 Total: -42.60 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 2.06 Total: 54.56 kcal Total: -87.03 1.10 -85.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482052476.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.780 kcal (2) G-P(sol) polarization free energy of solvation -87.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds