Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.43737 * 2 1 4 4 C 1.54100 * 110.48997 * 122.54667 * 2 1 3 5 5 O 1.43745 * 107.29470 * 120.70070 * 4 2 1 6 6 C 1.44382 * 106.97797 * 333.49135 * 5 4 2 7 7 H 1.08995 * 110.61389 * 281.39777 * 6 5 4 8 8 C 1.53003 * 110.61765 * 158.55750 * 6 5 4 9 9 C 1.53002 * 109.47033 * 66.45398 * 8 6 5 10 10 C 1.50697 * 109.47158 * 179.97438 * 9 8 6 11 11 O 1.21288 * 119.99882 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00067 * 179.72301 * 10 9 8 13 13 C 1.46505 * 119.99759 * 180.27815 * 12 10 9 14 14 C 1.53002 * 109.46911 * 180.02562 * 13 12 10 15 15 H 1.09009 * 109.67811 * 59.12998 * 14 13 12 16 16 C 1.53296 * 109.68296 * 179.64511 * 14 13 12 17 17 O 1.42960 * 109.22074 * 172.02300 * 16 14 13 18 18 C 1.42961 * 114.17052 * 297.42045 * 17 16 14 19 19 C 1.53301 * 109.22039 * 62.58392 * 18 17 16 20 20 N 1.47147 * 109.68257 * 298.57589 * 14 13 12 21 21 C 1.36935 * 120.98246 * 9.71953 * 20 14 13 22 22 H 1.08002 * 120.00137 * 329.50972 * 21 20 14 23 23 C 1.38818 * 120.00199 * 149.51242 * 21 20 14 24 24 N 1.31623 * 120.00095 * 163.18724 * 23 21 20 25 25 Si 1.86794 * 120.00025 * 343.18647 * 23 21 20 26 26 H 1.48495 * 109.47084 * 88.96447 * 25 23 21 27 27 H 1.48497 * 109.47326 * 208.96818 * 25 23 21 28 28 H 1.48506 * 109.47077 * 328.96546 * 25 23 21 29 29 C 1.54813 * 110.48957 * 237.31375 * 2 1 3 30 30 H 1.08997 * 109.47160 * 298.90560 * 1 2 3 31 31 H 1.09003 * 109.47355 * 58.90717 * 1 2 3 32 32 H 1.09002 * 109.46835 * 178.90803 * 1 2 3 33 33 H 1.09006 * 109.47132 * 181.09143 * 3 2 1 34 34 H 1.08995 * 109.47274 * 301.08750 * 3 2 1 35 35 H 1.08999 * 109.47213 * 61.09526 * 3 2 1 36 36 H 1.09001 * 109.87502 * 1.28116 * 4 2 1 37 37 H 1.09001 * 109.88009 * 240.12997 * 4 2 1 38 38 H 1.09004 * 109.47320 * 306.45517 * 8 6 5 39 39 H 1.09000 * 109.46867 * 186.45159 * 8 6 5 40 40 H 1.09004 * 109.46971 * 59.99905 * 9 8 6 41 41 H 1.09000 * 109.47100 * 299.99619 * 9 8 6 42 42 H 0.96996 * 120.00055 * 0.27657 * 12 10 9 43 43 H 1.08999 * 109.46859 * 299.99810 * 13 12 10 44 44 H 1.09000 * 109.47111 * 60.00380 * 13 12 10 45 45 H 1.08997 * 109.51617 * 291.95464 * 16 14 13 46 46 H 1.09005 * 109.50553 * 52.10366 * 16 14 13 47 47 H 1.08997 * 109.51108 * 182.50198 * 18 17 16 48 48 H 1.09001 * 109.51616 * 302.66097 * 18 17 16 49 49 H 1.08995 * 109.68006 * 67.42024 * 19 18 17 50 50 H 1.09000 * 109.67896 * 187.97413 * 19 18 17 51 51 H 0.96992 * 119.99853 * 179.97438 * 24 23 21 52 52 H 1.08991 * 110.91159 * 144.00884 * 29 2 1 53 53 H 1.09001 * 110.90504 * 20.39957 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 6 2.0694 -0.7766 1.2168 5 8 2.8754 -1.8548 0.7126 6 6 2.3780 -2.1724 -0.6051 7 1 1.4714 -2.7737 -0.5384 8 6 3.4465 -2.9005 -1.4232 9 6 3.7187 -4.2716 -0.8012 10 6 4.7706 -4.9890 -1.6073 11 8 5.2552 -4.4559 -2.5830 12 7 5.1772 -6.2205 -1.2405 13 6 6.2042 -6.9154 -2.0207 14 6 6.4800 -8.2845 -1.3959 15 1 5.5618 -8.8718 -1.3788 16 6 7.5479 -9.0197 -2.2138 17 8 7.9325 -10.2108 -1.5231 18 6 8.5323 -9.9793 -0.2463 19 6 7.5147 -9.2933 0.6724 20 7 6.9837 -8.1109 -0.0243 21 6 6.9595 -6.8852 0.5857 22 1 7.0524 -5.9860 -0.0053 23 6 6.8157 -6.7983 1.9637 24 7 7.1182 -5.6796 2.5877 25 14 6.1928 -8.2691 2.9323 26 1 7.3417 -9.1203 3.3331 27 1 5.4797 -7.7964 4.1460 28 1 5.2619 -9.0598 2.0876 29 6 2.0719 -0.7832 -1.2205 30 1 -0.3633 0.4967 0.8996 31 1 -0.3634 0.5307 -0.8800 32 1 -0.3633 -1.0275 -0.0196 33 1 3.1540 1.4154 -0.0196 34 1 1.6939 1.9594 -0.8800 35 1 1.7256 1.9476 0.8996 36 1 1.2391 -1.1757 1.7995 37 1 2.6773 -0.1180 1.8371 38 1 4.3651 -2.3137 -1.4253 39 1 3.0951 -3.0292 -2.4470 40 1 2.8001 -4.8584 -0.7991 41 1 4.0700 -4.1429 0.2226 42 1 4.7899 -6.6467 -0.4601 43 1 5.8551 -7.0474 -3.0448 44 1 7.1206 -6.3252 -2.0224 45 1 7.1424 -9.2804 -3.1914 46 1 8.4177 -8.3749 -2.3398 47 1 8.8348 -10.9305 0.1917 48 1 9.4057 -9.3381 -0.3651 49 1 6.7010 -9.9825 0.8983 50 1 8.0035 -8.9860 1.5969 51 1 7.0173 -5.6188 3.5505 52 1 2.9797 -0.3207 -1.6077 53 1 1.3140 -0.8616 -2.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484608459.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -133.995701 kcal Electronic energy + Delta-G solvation = -31198.856343 eV Core-core repulsion = 27070.083594 eV Total energy + Delta-G solvation = -4128.772748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10627 -40.72695 -39.96116 -37.05483 -35.74264 -35.31499 -34.42630 -33.57959 -32.58187 -30.33204 -29.21231 -28.23437 -27.30466 -26.77377 -25.23829 -25.06029 -23.60241 -21.98949 -21.58494 -21.06360 -20.18237 -18.82178 -17.89863 -17.62622 -17.53022 -17.22462 -16.78718 -16.49694 -16.38678 -16.19220 -16.01719 -15.73571 -15.53896 -15.18175 -14.77992 -14.56031 -14.44405 -14.39632 -14.30784 -14.02167 -13.73628 -13.61223 -13.45975 -13.08155 -12.95658 -12.81377 -12.65645 -12.39801 -12.34203 -12.31289 -12.18078 -12.05071 -12.03036 -11.59152 -11.55403 -11.55027 -11.38811 -11.35949 -11.09181 -10.74239 -10.53331 -10.48392 -9.83951 -8.85073 -8.10479 -5.50513 1.31251 1.43104 1.50921 1.77000 2.39590 2.44065 2.88151 2.96084 3.04345 3.23963 3.46514 3.69845 3.89379 3.89570 3.94683 3.98740 4.12922 4.14393 4.21853 4.27476 4.32255 4.36225 4.40291 4.45884 4.48009 4.52555 4.62899 4.70099 4.70576 4.71758 4.75859 4.77890 4.80771 4.83771 4.91436 4.93658 4.98372 5.02407 5.07354 5.14634 5.21683 5.22639 5.27008 5.31210 5.43560 5.63857 5.87441 6.05849 6.19131 6.21767 6.71998 6.86693 7.38447 7.59663 8.00193 9.07237 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.002746 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.977058 B =10192.929517 C =11419.514710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 C -0.135 4.135 4 C 0.045 3.955 5 O -0.403 6.403 6 C 0.076 3.924 7 H 0.085 0.915 8 C -0.086 4.086 9 C -0.130 4.130 10 C 0.508 3.492 11 O -0.595 6.595 12 N -0.698 5.698 13 C 0.141 3.859 14 C 0.128 3.872 15 H 0.058 0.942 16 C 0.057 3.943 17 O -0.390 6.390 18 C 0.053 3.947 19 C 0.084 3.916 20 N -0.619 5.619 21 C -0.237 4.237 22 H 0.064 0.936 23 C -0.022 4.022 24 N -0.951 5.951 25 Si 0.940 3.060 26 H -0.278 1.278 27 H -0.318 1.318 28 H -0.259 1.259 29 C -0.138 4.138 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.409 0.591 43 H 0.085 0.915 44 H 0.039 0.961 45 H 0.125 0.875 46 H 0.047 0.953 47 H 0.117 0.883 48 H 0.047 0.953 49 H 0.039 0.961 50 H 0.063 0.937 51 H 0.259 0.741 52 H 0.069 0.931 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 4.380 -7.471 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C -0.193 4.193 4 C -0.032 4.032 5 O -0.323 6.323 6 C 0.019 3.981 7 H 0.103 0.897 8 C -0.124 4.124 9 C -0.170 4.170 10 C 0.296 3.704 11 O -0.478 6.478 12 N -0.348 5.348 13 C 0.016 3.984 14 C 0.023 3.977 15 H 0.076 0.924 16 C -0.022 4.022 17 O -0.308 6.308 18 C -0.025 4.025 19 C -0.041 4.041 20 N -0.346 5.346 21 C -0.366 4.366 22 H 0.082 0.918 23 C -0.218 4.218 24 N -0.597 5.597 25 Si 0.769 3.231 26 H -0.205 1.205 27 H -0.247 1.247 28 H -0.183 1.183 29 C -0.175 4.175 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.098 0.902 42 H 0.245 0.755 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.143 0.857 46 H 0.065 0.935 47 H 0.134 0.866 48 H 0.065 0.935 49 H 0.057 0.943 50 H 0.081 0.919 51 H 0.068 0.932 52 H 0.088 0.912 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.675 4.522 -7.988 15.650 hybrid contribution 0.042 -0.170 1.686 1.695 sum -12.633 4.351 -6.302 14.773 Atomic orbital electron populations 1.21848 0.91888 1.02360 1.03010 1.21953 0.97502 0.96442 0.93890 1.21834 1.00403 0.94103 1.02929 1.23493 0.94855 0.88425 0.96387 1.88958 1.57518 1.53510 1.32356 1.23280 0.96154 0.96409 0.82285 0.89699 1.21281 0.98493 0.93597 0.99012 1.21563 0.98455 0.97266 0.99686 1.21058 0.83518 0.81256 0.84540 1.90595 1.59768 1.67115 1.30315 1.45985 1.40146 1.17466 1.31163 1.21099 0.90988 0.91781 0.94504 1.21636 0.96619 0.94497 0.84957 0.92394 1.23011 0.96784 0.86738 0.95632 1.87836 1.80438 1.30784 1.31719 1.23034 0.94319 1.01262 0.83885 1.22127 0.96337 0.89267 0.96329 1.44554 1.71626 1.05390 1.13072 1.18764 1.43017 0.84478 0.90352 0.91844 1.25844 1.00158 0.98026 0.97752 1.69944 1.52130 1.28785 1.08840 0.86065 0.78933 0.80397 0.77658 1.20523 1.24696 1.18309 1.23288 1.02139 0.94046 0.98052 0.91595 0.91031 0.92390 0.93550 0.91139 0.91477 0.91665 0.90332 0.93287 0.88934 0.86643 0.90223 0.75455 0.89705 0.94306 0.85710 0.93502 0.86555 0.93466 0.94272 0.91880 0.93189 0.91183 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.25 71.98 0.59 -1.11 16 2 C -0.10 -1.69 0.99 -51.19 -0.05 -1.74 16 3 C -0.14 -2.09 8.27 71.98 0.60 -1.50 16 4 C 0.04 1.03 7.04 72.35 0.51 1.54 16 5 O -0.40 -12.44 10.89 -148.98 -1.62 -14.06 16 6 C 0.08 1.86 3.33 31.28 0.10 1.96 16 7 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 8 C -0.09 -2.51 4.28 30.60 0.13 -2.37 16 9 C -0.13 -4.21 5.62 29.85 0.17 -4.05 16 10 C 0.51 19.67 7.83 87.66 0.69 20.35 16 11 O -0.60 -26.12 15.98 -3.06 -0.05 -26.17 16 12 N -0.70 -26.60 3.80 -463.05 -1.76 -28.36 16 13 C 0.14 5.09 4.44 86.38 0.38 5.48 16 14 C 0.13 4.52 3.20 44.97 0.14 4.66 16 15 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 16 C 0.06 1.72 6.29 72.08 0.45 2.17 16 17 O -0.39 -12.66 10.74 -148.98 -1.60 -14.26 16 18 C 0.05 1.73 6.99 72.08 0.50 2.24 16 19 C 0.08 3.34 4.38 86.36 0.38 3.72 16 20 N -0.62 -26.69 2.78 -673.71 -1.87 -28.57 16 21 C -0.24 -12.25 7.59 84.04 0.64 -11.61 16 22 H 0.06 3.70 5.99 -2.91 -0.02 3.68 16 23 C -0.02 -1.22 5.28 84.86 0.45 -0.77 16 24 N -0.95 -57.71 13.97 21.65 0.30 -57.41 16 25 Si 0.94 43.98 24.28 68.60 1.67 45.65 16 26 H -0.28 -12.46 6.54 99.48 0.65 -11.81 16 27 H -0.32 -15.54 7.11 99.48 0.71 -14.83 16 28 H -0.26 -11.41 6.65 99.48 0.66 -10.75 16 29 C -0.14 -2.66 5.70 31.90 0.18 -2.48 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.33 7.69 -2.39 -0.02 1.32 16 37 H 0.08 1.78 7.69 -2.39 -0.02 1.76 16 38 H 0.05 1.70 8.10 -2.38 -0.02 1.68 16 39 H 0.09 2.42 8.10 -2.39 -0.02 2.40 16 40 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 41 H 0.08 3.04 7.92 -2.39 -0.02 3.02 16 42 H 0.41 15.87 7.39 -92.71 -0.68 15.18 16 43 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.04 1.64 7.52 -2.39 -0.02 1.63 16 45 H 0.13 2.89 8.14 -2.39 -0.02 2.87 16 46 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 48 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.04 1.53 6.82 -2.39 -0.02 1.51 16 50 H 0.06 2.74 4.89 -2.39 -0.01 2.73 16 51 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 52 H 0.07 1.50 7.79 -2.39 -0.02 1.48 16 53 H 0.10 1.49 7.86 -2.39 -0.02 1.47 16 Total: -1.00 -69.83 402.25 1.03 -68.81 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: 0.10 Total: 37.88 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 5.87 Total: 16.49 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -3.33 Total: -114.33 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -3.27 Total: -54.49 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.67 Total: 45.65 kcal Total: -69.83 1.03 -68.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484608459.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.190 kcal (2) G-P(sol) polarization free energy of solvation -69.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds