Wall clock time and date at job start Sat Apr 11 2020 06:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.43379 * 2 1 4 4 C 1.54098 * 110.48948 * 122.55015 * 2 1 3 5 5 O 1.43748 * 107.29135 * 120.70932 * 4 2 1 6 6 C 1.44378 * 106.97815 * 333.48310 * 5 4 2 7 7 H 1.09004 * 110.61771 * 281.40744 * 6 5 4 8 8 C 1.52998 * 110.61989 * 158.56403 * 6 5 4 9 9 C 1.53004 * 109.46977 * 68.58452 * 8 6 5 10 10 C 1.50699 * 109.46820 * 179.97438 * 9 8 6 11 11 O 1.21276 * 120.00100 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99662 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00123 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47102 * 180.02562 * 13 12 10 15 15 H 1.08995 * 109.68271 * 299.72160 * 14 13 12 16 16 C 1.53302 * 109.67786 * 179.16945 * 14 13 12 17 17 O 1.42962 * 109.22133 * 187.97860 * 16 14 13 18 18 C 1.42966 * 114.16869 * 62.57604 * 17 16 14 19 19 C 1.53714 * 109.14783 * 297.29242 * 18 17 16 20 20 N 1.47151 * 109.67882 * 60.24569 * 14 13 12 21 21 C 1.36927 * 120.98321 * 350.22592 * 20 14 13 22 22 H 1.08006 * 120.00168 * 36.47842 * 21 20 14 23 23 C 1.38816 * 120.00269 * 216.74277 * 21 20 14 24 24 N 1.31619 * 120.00305 * 213.40210 * 23 21 20 25 25 Si 1.86801 * 119.99666 * 33.40841 * 23 21 20 26 26 H 1.48500 * 109.47215 * 84.37583 * 25 23 21 27 27 H 1.48504 * 109.47004 * 204.37947 * 25 23 21 28 28 H 1.48499 * 109.46798 * 324.37700 * 25 23 21 29 29 C 1.54987 * 110.33960 * 237.31213 * 2 1 3 30 30 H 1.08994 * 109.47397 * 298.90211 * 1 2 3 31 31 H 1.08997 * 109.47466 * 58.90340 * 1 2 3 32 32 H 1.09010 * 109.47115 * 178.90508 * 1 2 3 33 33 H 1.08997 * 109.47161 * 181.08965 * 3 2 1 34 34 H 1.08992 * 109.47414 * 301.09552 * 3 2 1 35 35 H 1.09000 * 109.46973 * 61.09780 * 3 2 1 36 36 H 1.09000 * 109.87932 * 1.28245 * 4 2 1 37 37 H 1.08997 * 109.87545 * 240.12661 * 4 2 1 38 38 H 1.08997 * 109.47100 * 308.58020 * 8 6 5 39 39 H 1.08997 * 109.46949 * 188.57691 * 8 6 5 40 40 H 1.08997 * 109.47473 * 59.99298 * 9 8 6 41 41 H 1.09004 * 109.46450 * 299.99738 * 9 8 6 42 42 H 0.97007 * 120.00459 * 0.02562 * 12 10 9 43 43 H 1.09007 * 109.46706 * 60.00563 * 13 12 10 44 44 H 1.08997 * 109.47128 * 300.01069 * 13 12 10 45 45 H 1.09008 * 109.51093 * 307.90130 * 16 14 13 46 46 H 1.08997 * 109.51162 * 67.99845 * 16 14 13 47 47 H 1.09001 * 109.50854 * 57.34252 * 18 17 16 48 48 H 1.08998 * 109.50914 * 177.44495 * 18 17 16 49 49 H 1.09005 * 109.83675 * 292.85475 * 19 18 17 50 50 H 1.08998 * 109.74149 * 172.16491 * 19 18 17 51 51 H 0.96994 * 119.99792 * 179.97438 * 24 23 21 52 52 H 1.08997 * 110.84237 * 143.90092 * 29 2 1 53 53 H 1.08999 * 111.05095 * 20.23875 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0641 1.4337 0.0000 4 6 2.0694 -0.7767 1.2168 5 8 2.8755 -1.8547 0.7124 6 6 2.3781 -2.1723 -0.6053 7 1 1.4714 -2.7736 -0.5387 8 6 3.4466 -2.9003 -1.4234 9 6 3.6806 -4.2922 -0.8329 10 6 4.7326 -5.0094 -1.6392 11 8 5.2449 -4.4612 -2.5919 12 7 5.1047 -6.2598 -1.3008 13 6 6.1269 -6.9574 -2.0849 14 6 6.3610 -8.3493 -1.4943 15 1 6.7022 -8.2579 -0.4632 16 6 7.4152 -9.0914 -2.3238 17 8 7.4922 -10.4487 -1.8815 18 6 6.2840 -11.1919 -2.0598 19 6 5.1711 -10.5561 -1.2113 20 7 5.1095 -9.1221 -1.5357 21 6 3.9217 -8.5233 -1.8606 22 1 3.8965 -7.7440 -2.6081 23 6 2.7508 -8.9140 -1.2256 24 7 1.6094 -8.8967 -1.8807 25 14 2.7951 -9.4641 0.5591 26 1 2.7266 -8.2747 1.4455 27 1 1.6368 -10.3524 0.8321 28 1 4.0572 -10.2025 0.8182 29 6 2.0687 -0.7848 -1.2231 30 1 -0.3634 0.4967 0.8996 31 1 -0.3634 0.5307 -0.8799 32 1 -0.3634 -1.0276 -0.0196 33 1 3.1538 1.4155 -0.0195 34 1 1.6937 1.9595 -0.8799 35 1 1.7255 1.9476 0.8997 36 1 1.2391 -1.1758 1.7994 37 1 2.6773 -0.1180 1.8369 38 1 4.3763 -2.3321 -1.3943 39 1 3.1111 -2.9955 -2.4561 40 1 2.7509 -4.8603 -0.8620 41 1 4.0161 -4.1969 0.1998 42 1 4.6951 -6.6983 -0.5385 43 1 7.0568 -6.3893 -2.0569 44 1 5.7905 -7.0529 -3.1173 45 1 7.1334 -9.0669 -3.3766 46 1 8.3846 -8.6101 -2.1952 47 1 5.9982 -11.1751 -3.1115 48 1 6.4403 -12.2225 -1.7413 49 1 5.3949 -10.6837 -0.1521 50 1 4.2160 -11.0266 -1.4445 51 1 0.7913 -9.1700 -1.4370 52 1 2.9752 -0.3216 -1.6125 53 1 1.3098 -0.8661 -2.0013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484608460.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:58 Heat of formation + Delta-G solvation = -132.091630 kcal Electronic energy + Delta-G solvation = -31148.219425 eV Core-core repulsion = 27019.529244 eV Total energy + Delta-G solvation = -4128.690182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.10669 -40.70294 -39.91329 -37.02082 -35.74955 -35.23777 -34.44857 -33.60560 -32.49773 -30.34322 -29.17101 -28.24479 -27.29562 -26.77402 -25.13480 -25.06032 -23.50034 -22.02061 -21.58890 -21.06007 -20.20539 -18.78347 -17.85392 -17.62363 -17.38903 -17.27082 -16.70958 -16.51152 -16.37770 -16.13844 -15.97169 -15.74661 -15.52985 -15.11217 -14.74485 -14.55868 -14.45030 -14.42264 -14.30211 -14.04947 -13.73066 -13.70740 -13.43050 -13.03346 -12.97919 -12.71042 -12.66655 -12.50392 -12.40856 -12.27432 -12.23197 -12.06886 -12.03199 -11.60955 -11.57226 -11.51322 -11.40024 -11.32150 -11.00882 -10.69812 -10.55691 -10.35194 -9.84844 -8.71796 -8.20411 -5.48051 1.38637 1.49496 1.53961 1.76672 2.38425 2.48662 2.88605 2.91296 3.02603 3.28603 3.45340 3.67991 3.87490 3.88507 3.97180 3.99017 4.10380 4.17065 4.24923 4.27570 4.35247 4.38002 4.43903 4.46998 4.55149 4.57558 4.62806 4.70299 4.72123 4.75149 4.77399 4.78647 4.80843 4.83917 4.96905 4.97562 5.00513 5.05248 5.06098 5.10936 5.20577 5.24408 5.26893 5.29761 5.42113 5.63991 5.89747 5.98964 6.23176 6.26447 6.71674 6.91513 7.37414 7.61358 8.09215 8.97458 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.002697 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.943908 B =10377.689510 C =11416.535125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 C -0.133 4.133 4 C 0.047 3.953 5 O -0.395 6.395 6 C 0.077 3.923 7 H 0.069 0.931 8 C -0.084 4.084 9 C -0.132 4.132 10 C 0.508 3.492 11 O -0.594 6.594 12 N -0.697 5.697 13 C 0.142 3.858 14 C 0.123 3.877 15 H 0.054 0.946 16 C 0.059 3.941 17 O -0.392 6.392 18 C 0.050 3.950 19 C 0.105 3.895 20 N -0.611 5.611 21 C -0.250 4.250 22 H 0.052 0.948 23 C 0.006 3.994 24 N -0.925 5.925 25 Si 0.886 3.114 26 H -0.286 1.286 27 H -0.309 1.309 28 H -0.236 1.236 29 C -0.139 4.139 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.408 0.592 43 H 0.081 0.919 44 H 0.042 0.958 45 H 0.046 0.954 46 H 0.121 0.879 47 H 0.044 0.956 48 H 0.114 0.886 49 H 0.040 0.960 50 H 0.058 0.942 51 H 0.261 0.739 52 H 0.078 0.922 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 13.643 5.366 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 C -0.190 4.190 4 C -0.030 4.030 5 O -0.315 6.315 6 C 0.020 3.980 7 H 0.087 0.913 8 C -0.122 4.122 9 C -0.171 4.171 10 C 0.296 3.704 11 O -0.476 6.476 12 N -0.346 5.346 13 C 0.018 3.982 14 C 0.017 3.983 15 H 0.071 0.929 16 C -0.020 4.020 17 O -0.310 6.310 18 C -0.028 4.028 19 C -0.020 4.020 20 N -0.338 5.338 21 C -0.379 4.379 22 H 0.070 0.930 23 C -0.193 4.193 24 N -0.568 5.568 25 Si 0.713 3.287 26 H -0.213 1.213 27 H -0.237 1.237 28 H -0.160 1.160 29 C -0.177 4.177 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.122 0.878 42 H 0.244 0.756 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.139 0.861 47 H 0.063 0.937 48 H 0.132 0.868 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.070 0.930 52 H 0.096 0.904 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.044 13.800 4.882 14.951 hybrid contribution -1.341 -0.573 0.878 1.702 sum 1.703 13.227 5.760 14.527 Atomic orbital electron populations 1.21875 0.92619 1.01980 1.03000 1.21983 0.97062 0.96816 0.94001 1.21814 1.00734 0.93606 1.02887 1.23488 0.95010 0.88362 0.96092 1.88861 1.57226 1.53588 1.31789 1.23171 0.95920 0.96294 0.82658 0.91285 1.21242 0.99090 0.93341 0.98556 1.21581 0.98010 0.96848 1.00698 1.21008 0.83186 0.81613 0.84625 1.90593 1.58123 1.67944 1.30979 1.45999 1.40991 1.14515 1.33134 1.21081 0.91022 0.91400 0.94732 1.21685 0.87881 0.90439 0.98296 0.92851 1.22964 0.99788 0.82380 0.96833 1.87827 1.34848 1.23316 1.85053 1.23171 0.84849 0.95787 0.98944 1.22183 0.98104 0.84425 0.97320 1.44521 1.03560 1.03898 1.81832 1.18467 0.83515 1.20022 1.15855 0.93037 1.25834 0.94645 0.98654 1.00144 1.70147 1.00268 1.49573 1.36771 0.86818 0.78250 0.78275 0.85388 1.21282 1.23711 1.15971 1.23318 1.02260 0.94057 0.98026 0.91271 0.91380 0.93098 0.92793 0.91578 0.91262 0.92054 0.89085 0.91281 0.90590 0.89343 0.87840 0.75587 0.90131 0.93985 0.93548 0.86091 0.93727 0.86817 0.94187 0.92389 0.92971 0.90351 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.25 71.98 0.59 -1.31 16 2 C -0.10 -1.60 0.99 -51.13 -0.05 -1.65 16 3 C -0.13 -1.75 8.28 71.98 0.60 -1.15 16 4 C 0.05 0.92 7.04 72.35 0.51 1.43 16 5 O -0.39 -10.44 10.98 -148.98 -1.64 -12.08 16 6 C 0.08 1.90 3.30 31.28 0.10 2.01 16 7 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 8 C -0.08 -2.45 4.27 30.59 0.13 -2.32 16 9 C -0.13 -4.28 5.63 29.85 0.17 -4.11 16 10 C 0.51 19.62 7.83 87.66 0.69 20.30 16 11 O -0.59 -25.88 15.98 -3.02 -0.05 -25.93 16 12 N -0.70 -26.65 3.86 -463.05 -1.79 -28.44 16 13 C 0.14 5.15 4.46 86.38 0.39 5.54 16 14 C 0.12 4.33 3.21 44.97 0.14 4.47 16 15 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 16 C 0.06 1.80 6.29 72.08 0.45 2.25 16 17 O -0.39 -12.90 10.74 -148.98 -1.60 -14.50 16 18 C 0.05 1.64 7.00 72.22 0.51 2.15 16 19 C 0.10 4.09 4.69 86.49 0.41 4.50 16 20 N -0.61 -25.89 2.60 -672.91 -1.75 -27.64 16 21 C -0.25 -12.50 7.02 84.04 0.59 -11.91 16 22 H 0.05 2.93 6.31 -2.91 -0.02 2.91 16 23 C 0.01 0.33 4.87 84.86 0.41 0.74 16 24 N -0.93 -53.39 13.97 21.65 0.30 -53.09 16 25 Si 0.89 40.31 27.14 68.60 1.86 42.18 16 26 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 28 H -0.24 -9.91 4.74 99.48 0.47 -9.44 16 29 C -0.14 -2.72 5.71 31.96 0.18 -2.53 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 1.13 7.69 -2.39 -0.02 1.11 16 37 H 0.09 1.56 7.69 -2.39 -0.02 1.54 16 38 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 39 H 0.08 2.30 8.10 -2.39 -0.02 2.28 16 40 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.10 3.11 7.99 -2.38 -0.02 3.10 16 42 H 0.41 15.95 7.28 -92.70 -0.67 15.28 16 43 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 44 H 0.04 1.75 7.57 -2.39 -0.02 1.73 16 45 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.12 2.90 8.14 -2.39 -0.02 2.89 16 47 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 49 H 0.04 1.56 6.36 -2.38 -0.02 1.55 16 50 H 0.06 2.46 6.79 -2.39 -0.02 2.45 16 51 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 52 H 0.08 1.55 7.79 -2.39 -0.02 1.53 16 53 H 0.09 1.58 7.86 -2.39 -0.02 1.56 16 Total: -1.00 -64.61 404.87 1.13 -63.48 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -0.03 Total: 37.62 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 5.82 Total: 18.40 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -3.23 Total: -109.17 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -3.28 Total: -52.51 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.86 Total: 42.18 kcal Total: -64.61 1.13 -63.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484608460.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.613 kcal (2) G-P(sol) polarization free energy of solvation -64.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds