Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00507 * 2 1 4 4 H 1.48501 * 109.47252 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46935 * 299.99895 * 3 2 1 6 6 H 1.48499 * 109.46884 * 60.00170 * 3 2 1 7 7 C 1.38815 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99981 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.49778 * 300.06601 * 10 9 7 12 12 O 1.42905 * 109.46854 * 59.93509 * 11 10 9 13 13 C 1.53035 * 109.52282 * 60.14523 * 10 9 7 14 14 C 1.53037 * 109.53754 * 58.60466 * 13 10 9 15 15 C 1.52760 * 109.38425 * 61.23992 * 14 13 10 16 16 N 1.46930 * 109.00417 * 305.58679 * 15 14 13 17 17 C 1.34774 * 120.62973 * 233.57838 * 16 15 14 18 18 O 1.21286 * 119.99983 * 179.71905 * 17 16 15 19 19 C 1.50702 * 120.00343 * 359.72783 * 17 16 15 20 20 C 1.52999 * 109.47391 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46976 * 180.02562 * 20 19 17 22 22 H 1.09003 * 109.48081 * 304.97565 * 21 20 19 23 23 C 1.53280 * 109.45473 * 184.98514 * 21 20 19 24 24 C 1.53179 * 109.06328 * 182.44699 * 23 21 20 25 25 C 1.53177 * 109.10692 * 56.94222 * 24 23 21 26 26 C 1.53091 * 109.16264 * 302.97408 * 25 24 23 27 27 O 1.42901 * 109.47996 * 65.00173 * 21 20 19 28 28 C 1.46928 * 118.74074 * 53.31393 * 16 15 14 29 29 H 0.97001 * 119.99400 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00208 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47235 * 179.97438 * 11 10 9 32 32 H 1.08996 * 109.47239 * 299.94283 * 11 10 9 33 33 H 0.96697 * 114.00000 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.45967 * 178.62497 * 13 10 9 35 35 H 1.08998 * 109.46564 * 298.58279 * 13 10 9 36 36 H 1.08998 * 109.49843 * 181.31300 * 14 13 10 37 37 H 1.09002 * 109.50112 * 301.38025 * 14 13 10 38 38 H 1.09005 * 109.51308 * 185.70703 * 15 14 13 39 39 H 1.09001 * 109.43432 * 65.42138 * 15 14 13 40 40 H 1.09005 * 109.46811 * 59.99574 * 19 17 16 41 41 H 1.08998 * 109.46639 * 299.99864 * 19 17 16 42 42 H 1.08997 * 109.46825 * 59.99652 * 20 19 17 43 43 H 1.08998 * 109.47090 * 299.99876 * 20 19 17 44 44 H 1.09006 * 109.64318 * 62.53179 * 23 21 20 45 45 H 1.09002 * 109.50809 * 302.28496 * 23 21 20 46 46 H 1.09002 * 109.54484 * 297.03018 * 24 23 21 47 47 H 1.08999 * 109.54222 * 176.85184 * 24 23 21 48 48 H 1.09004 * 109.52253 * 62.88396 * 25 24 23 49 49 H 1.09000 * 109.52322 * 183.06877 * 25 24 23 50 50 H 1.09000 * 109.47857 * 177.59315 * 26 25 24 51 51 H 1.09000 * 109.48011 * 297.61575 * 26 25 24 52 52 H 1.09000 * 109.58312 * 66.42341 * 28 16 15 53 53 H 1.08990 * 109.58680 * 186.85289 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 2.9389 -3.7380 -1.2488 12 8 3.8669 -2.6512 -1.2481 13 6 2.9353 -3.7409 1.2504 14 6 2.0583 -3.6270 2.4994 15 6 1.0633 -4.7857 2.5276 16 7 0.3145 -4.8043 1.2636 17 6 -1.0333 -4.8001 1.2639 18 8 -1.6399 -4.8104 0.2137 19 6 -1.7866 -4.7823 2.5690 20 6 -3.2909 -4.7802 2.2896 21 6 -4.0556 -4.7615 3.6147 22 1 -3.7301 -5.5973 4.2340 23 6 -5.5583 -4.8850 3.3387 24 6 -6.3190 -4.8038 4.6657 25 6 -5.9619 -3.4907 5.3689 26 6 -4.4453 -3.4222 5.5656 27 8 -3.7962 -3.5331 4.2973 28 6 1.0628 -4.8217 -0.0007 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 3.4840 -4.6818 -1.2481 32 1 2.3133 -3.6808 -2.1395 33 1 4.4593 -2.6394 -2.0123 34 1 3.4611 -4.6956 1.2617 35 1 3.6606 -2.9273 1.2406 36 1 2.6863 -3.6634 3.3895 37 1 1.5138 -2.6830 2.4768 38 1 0.3722 -4.6520 3.3599 39 1 1.6037 -5.7249 2.6461 40 1 -1.5203 -3.8864 3.1300 41 1 -1.5260 -5.6663 3.1509 42 1 -3.5574 -5.6758 1.7284 43 1 -3.5511 -3.8960 1.7078 44 1 -5.7652 -5.8413 2.8581 45 1 -5.8765 -4.0720 2.6860 46 1 -6.0377 -5.6450 5.2994 47 1 -7.3915 -4.8347 4.4737 48 1 -6.2883 -2.6495 4.7572 49 1 -6.4572 -3.4505 6.3390 50 1 -4.1812 -2.4707 6.0271 51 1 -4.1251 -4.2404 6.2107 52 1 1.6031 -5.7638 -0.0925 53 1 0.3714 -4.7116 -0.8360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484852303.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = -155.377019 kcal Electronic energy + Delta-G solvation = -31949.331845 eV Core-core repulsion = 27819.631933 eV Total energy + Delta-G solvation = -4129.699912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.37052 -40.32999 -39.27880 -37.12489 -35.55209 -34.93200 -34.51367 -33.71461 -32.68947 -31.23505 -30.37349 -27.43161 -26.65118 -25.87739 -25.46123 -24.54336 -23.05428 -22.51131 -21.19516 -20.43377 -19.56493 -19.14667 -18.13370 -17.90765 -17.49021 -16.90222 -16.77258 -16.49901 -16.25707 -15.78590 -15.54615 -15.38635 -15.35881 -15.19159 -14.79573 -14.69688 -14.53581 -14.30016 -13.96236 -13.58779 -13.52941 -13.46149 -13.26675 -12.96981 -12.92749 -12.86964 -12.58929 -12.56812 -12.15210 -12.07706 -11.95492 -11.82764 -11.76096 -11.67189 -11.55594 -11.48902 -11.30643 -11.15151 -10.82732 -10.63819 -10.53868 -10.29679 -9.48410 -8.86802 -7.77833 -5.03365 1.45472 1.45966 1.56630 1.70664 2.14269 2.64710 2.90293 3.44044 3.53733 3.69743 3.76708 3.81881 3.94509 3.98692 4.02547 4.06402 4.16224 4.19504 4.29119 4.32834 4.36955 4.42223 4.44480 4.51829 4.57195 4.61641 4.64215 4.67506 4.72860 4.77730 4.82648 4.88009 4.93812 4.95302 5.03401 5.05691 5.06497 5.11250 5.14849 5.21588 5.29776 5.34777 5.43420 5.59527 5.65014 5.72322 5.91680 6.41500 6.43880 6.53837 7.14787 7.28527 7.50072 8.22495 8.45511 9.46711 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.003281 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.029013 B = 8530.702471 C = 9819.078404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.098 4.098 3 Si 0.959 3.041 4 H -0.266 1.266 5 H -0.305 1.305 6 H -0.303 1.303 7 C -0.177 4.177 8 H 0.096 0.904 9 N -0.716 5.716 10 C 0.174 3.826 11 C 0.076 3.924 12 O -0.566 6.566 13 C -0.108 4.108 14 C -0.127 4.127 15 C 0.112 3.888 16 N -0.601 5.601 17 C 0.506 3.494 18 O -0.592 6.592 19 C -0.123 4.123 20 C -0.092 4.092 21 C 0.095 3.905 22 H 0.083 0.917 23 C -0.153 4.153 24 C -0.118 4.118 25 C -0.157 4.157 26 C 0.053 3.947 27 O -0.406 6.406 28 C 0.119 3.881 29 H 0.239 0.761 30 H 0.363 0.637 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.376 0.624 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.034 0.966 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.053 0.947 49 H 0.092 0.908 50 H 0.092 0.908 51 H 0.067 0.933 52 H 0.106 0.894 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 -18.477 12.575 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.288 4.288 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.234 1.234 6 H -0.231 1.231 7 C -0.309 4.309 8 H 0.113 0.887 9 N -0.354 5.354 10 C 0.083 3.917 11 C -0.004 4.004 12 O -0.372 6.372 13 C -0.148 4.148 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.332 5.332 17 C 0.297 3.703 18 O -0.473 6.473 19 C -0.162 4.162 20 C -0.130 4.130 21 C 0.038 3.962 22 H 0.100 0.900 23 C -0.190 4.190 24 C -0.155 4.155 25 C -0.195 4.195 26 C -0.023 4.023 27 O -0.326 6.326 28 C -0.005 4.005 29 H 0.048 0.952 30 H 0.194 0.806 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.223 0.777 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.053 0.947 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.106 0.894 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.110 0.890 50 H 0.110 0.890 51 H 0.086 0.914 52 H 0.123 0.877 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.725 -18.107 12.524 22.329 hybrid contribution -0.098 1.639 -1.097 1.975 sum -3.823 -16.468 11.428 20.405 Atomic orbital electron populations 1.69891 1.06555 1.24623 1.62733 1.25449 0.96012 1.00609 1.06688 0.85214 0.78465 0.81273 0.75866 1.19003 1.23367 1.23136 1.19875 0.92003 0.84041 1.34972 0.88659 1.42603 1.04580 1.00765 1.87486 1.20408 0.91159 0.85993 0.94100 1.22621 0.91042 0.89156 0.97587 1.86728 1.50783 1.50494 1.49191 1.21740 0.97493 1.01235 0.94322 1.21685 0.98017 0.98343 0.98529 1.21896 0.94902 0.99484 0.84670 1.48038 1.05225 1.72052 1.07913 1.21329 0.82341 0.74551 0.92128 1.90649 1.68614 1.52386 1.35672 1.21597 0.95127 1.05502 0.93994 1.21315 0.93104 1.02547 0.96030 1.22197 0.94319 0.87064 0.92669 0.89953 1.22252 0.95142 1.02906 0.98746 1.21588 1.00548 0.97740 0.95669 1.22201 0.96788 0.98369 1.02100 1.22735 0.92045 1.02778 0.84728 1.87997 1.71617 1.39263 1.33742 1.21611 0.93939 0.98076 0.86836 0.95249 0.80598 0.91232 0.96090 0.77659 0.90023 0.93606 0.89305 0.94735 0.88503 0.87959 0.89175 0.85472 0.89391 0.94315 0.89437 0.93099 0.90218 0.90700 0.92798 0.88963 0.89011 0.91434 0.87652 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.28 13.06 21.65 0.28 -65.00 16 2 C -0.10 -5.98 5.50 84.86 0.47 -5.52 16 3 Si 0.96 49.90 29.55 68.60 2.03 51.92 16 4 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.31 -16.12 7.11 99.48 0.71 -15.41 16 6 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 7 C -0.18 -9.98 8.29 84.03 0.70 -9.29 16 8 H 0.10 5.29 5.31 -2.91 -0.02 5.28 16 9 N -0.72 -36.76 4.22 -302.98 -1.28 -38.04 16 10 C 0.17 6.59 0.68 3.68 0.00 6.59 16 11 C 0.08 2.59 6.08 71.98 0.44 3.03 16 12 O -0.57 -20.72 9.96 -148.98 -1.48 -22.20 16 13 C -0.11 -3.56 4.39 30.62 0.13 -3.42 16 14 C -0.13 -3.94 5.91 30.53 0.18 -3.76 16 15 C 0.11 2.73 6.31 86.22 0.54 3.27 16 16 N -0.60 -19.21 2.87 -819.73 -2.36 -21.57 16 17 C 0.51 18.12 7.70 87.66 0.67 18.79 16 18 O -0.59 -26.47 15.40 -3.05 -0.05 -26.52 16 19 C -0.12 -3.35 3.94 29.85 0.12 -3.23 16 20 C -0.09 -2.56 4.21 30.59 0.13 -2.43 16 21 C 0.09 2.08 2.65 30.69 0.08 2.16 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 C -0.15 -2.95 5.44 30.75 0.17 -2.79 16 24 C -0.12 -1.75 6.02 30.71 0.18 -1.56 16 25 C -0.16 -2.55 6.14 30.68 0.19 -2.37 16 26 C 0.05 1.01 6.84 72.01 0.49 1.50 16 27 O -0.41 -10.81 9.94 -148.98 -1.48 -12.30 16 28 C 0.12 3.98 5.15 86.36 0.44 4.43 16 29 H 0.24 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.36 21.53 7.65 -92.71 -0.71 20.82 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.38 9.88 9.12 -74.06 -0.68 9.21 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 1.77 6.84 -2.39 -0.02 1.75 16 36 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.03 1.45 7.53 -2.39 -0.02 1.43 16 38 H 0.10 2.03 5.94 -2.38 -0.01 2.02 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 2.73 7.36 -2.38 -0.02 2.71 16 41 H 0.13 2.33 7.95 -2.39 -0.02 2.31 16 42 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 43 H 0.04 1.39 8.10 -2.39 -0.02 1.38 16 44 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 53 H 0.06 2.42 7.00 -2.39 -0.02 2.40 16 Total: -1.00 -83.21 402.91 0.12 -83.08 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -0.48 Total: 45.20 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.94 Total: 5.42 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -3.35 Total: -124.61 kcal Atomic # 8 Polarization: -58.01 SS G_CDS: -3.01 Total: -61.02 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 2.03 Total: 51.92 kcal Total: -83.21 0.12 -83.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484852303.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.295 kcal (2) G-P(sol) polarization free energy of solvation -83.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds