Wall clock time and date at job start Sat Apr 11 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00254 * 2 1 4 4 H 1.48500 * 109.46487 * 269.99593 * 3 2 1 5 5 H 1.48493 * 109.46887 * 29.99402 * 3 2 1 6 6 H 1.48495 * 109.47357 * 149.99787 * 3 2 1 7 7 C 1.38819 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00107 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99553 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00054 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47146 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47054 * 180.02562 * 11 10 9 13 13 O 1.42895 * 109.47561 * 179.97438 * 12 11 10 14 14 C 1.42891 * 114.00489 * 180.02562 * 13 12 11 15 15 C 1.53042 * 109.46370 * 210.00213 * 14 13 12 16 16 C 1.53191 * 109.31349 * 178.63018 * 15 14 13 17 17 N 1.46920 * 108.77923 * 54.63171 * 16 15 14 18 18 C 1.34781 * 120.63124 * 126.37035 * 17 16 15 19 19 O 1.21272 * 119.99883 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99987 * 180.02562 * 18 17 16 21 21 H 1.08997 * 109.47869 * 54.97434 * 20 18 17 22 22 C 1.53097 * 109.48920 * 294.94773 * 20 18 17 23 23 C 1.53180 * 109.21119 * 182.43770 * 22 20 18 24 24 C 1.53177 * 109.03525 * 56.88485 * 23 22 20 25 25 C 1.53098 * 109.21356 * 303.11207 * 24 23 22 26 26 O 1.42898 * 109.48125 * 175.00060 * 20 18 17 27 27 C 1.46931 * 118.73936 * 306.64522 * 17 16 15 28 28 C 1.52764 * 109.00795 * 53.30810 * 27 17 16 29 29 H 0.97000 * 119.99467 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00276 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.46664 * 60.00212 * 10 9 7 32 32 H 1.08997 * 109.46787 * 300.00411 * 10 9 7 33 33 H 1.08997 * 109.47298 * 60.00439 * 11 10 9 34 34 H 1.08997 * 109.47482 * 299.99824 * 11 10 9 35 35 H 1.09002 * 109.46789 * 59.99506 * 12 11 10 36 36 H 1.09002 * 109.47139 * 300.00018 * 12 11 10 37 37 H 1.09005 * 109.46098 * 329.97760 * 14 13 12 38 38 H 1.08997 * 109.49817 * 58.67635 * 15 14 13 39 39 H 1.09004 * 109.49550 * 298.57825 * 15 14 13 40 40 H 1.09001 * 109.58264 * 294.84057 * 16 15 14 41 41 H 1.09003 * 109.70098 * 174.49341 * 16 15 14 42 42 H 1.09002 * 109.52138 * 302.30791 * 22 20 18 43 43 H 1.09005 * 109.52063 * 62.43199 * 22 20 18 44 44 H 1.09005 * 109.49724 * 297.04659 * 23 22 20 45 45 H 1.09005 * 109.59319 * 176.78366 * 23 22 20 46 46 H 1.09002 * 109.52487 * 183.17418 * 24 23 22 47 47 H 1.09004 * 109.52023 * 63.05037 * 24 23 22 48 48 H 1.08999 * 109.47354 * 177.55660 * 25 24 23 49 49 H 1.08999 * 109.48099 * 297.59428 * 25 24 23 50 50 H 1.08996 * 109.58333 * 173.14442 * 27 17 16 51 51 H 1.08994 * 109.58603 * 293.56765 * 27 17 16 52 52 H 1.08995 * 109.56208 * 185.55253 * 28 27 17 53 53 H 1.09004 * 109.38443 * 65.51508 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 6 1.8287 -6.1448 0.0005 13 8 0.9001 -7.2309 0.0005 14 6 1.5146 -8.5210 0.0017 15 6 0.6061 -9.5191 -0.7199 16 6 1.2834 -10.8929 -0.7466 17 7 1.6291 -11.2767 0.6288 18 6 1.2241 -12.4587 1.1344 19 8 0.5676 -13.2168 0.4526 20 6 1.5864 -12.8377 2.5473 21 1 1.2529 -12.0562 3.2301 22 6 3.1046 -12.9999 2.6594 23 6 3.4604 -13.4441 4.0815 24 6 2.7106 -14.7408 4.4021 25 6 1.2076 -14.5113 4.2227 26 8 0.9505 -14.0712 2.8877 27 6 2.4194 -10.3448 1.4448 28 6 1.7341 -8.9795 1.4452 29 1 -0.4849 0.8401 -0.0004 30 1 0.3555 -2.3880 -0.0002 31 1 2.6846 -3.7146 0.8905 32 1 2.6847 -3.7145 -0.8894 33 1 0.4375 -4.7618 -0.8903 34 1 0.4367 -4.7622 0.8896 35 1 2.4547 -6.2024 0.8910 36 1 2.4560 -6.2026 -0.8890 37 1 2.4745 -8.4665 -0.5119 38 1 0.4313 -9.1798 -1.7408 39 1 -0.3450 -9.5926 -0.1924 40 1 2.1894 -10.8420 -1.3505 41 1 0.6021 -11.6302 -1.1715 42 1 3.4440 -13.7527 1.9479 43 1 3.5896 -12.0482 2.4418 44 1 3.1668 -12.6687 4.7891 45 1 4.5343 -13.6167 4.1526 46 1 2.9140 -15.0341 5.4321 47 1 3.0419 -15.5296 3.7267 48 1 0.6731 -15.4431 4.4077 49 1 0.8692 -13.7518 4.9274 50 1 2.4855 -10.7193 2.4663 51 1 3.4199 -10.2483 1.0234 52 1 2.3621 -8.2561 1.9653 53 1 0.7724 -9.0575 1.9525 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485442057.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:29 Heat of formation + Delta-G solvation = -148.730592 kcal Electronic energy + Delta-G solvation = -29791.434169 eV Core-core repulsion = 25662.022468 eV Total energy + Delta-G solvation = -4129.411701 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.77778 -40.13059 -39.26599 -37.74336 -36.82006 -34.78987 -34.28372 -33.50121 -32.46436 -31.69792 -31.16593 -27.42270 -26.74716 -25.55073 -24.72457 -24.42927 -23.96160 -22.48102 -22.03320 -21.22891 -20.31795 -19.13487 -18.60243 -17.75296 -17.63692 -16.90495 -16.83206 -16.73118 -16.56258 -16.06552 -15.69939 -15.56241 -15.39914 -15.32479 -15.24510 -14.93719 -14.82844 -14.50369 -14.09046 -13.99949 -13.65663 -13.59083 -13.37282 -13.21462 -12.89141 -12.85002 -12.54281 -12.48398 -12.41543 -12.28968 -12.15156 -12.07592 -12.04450 -11.93897 -11.79787 -11.71726 -11.48009 -11.37576 -10.94091 -10.76114 -10.50642 -10.36979 -9.82582 -9.02330 -7.95742 -5.25915 1.42481 1.48185 1.50674 1.59158 1.64095 2.50929 2.66115 2.85628 3.34737 3.38079 3.65870 3.72896 3.77808 3.85080 3.93587 3.97319 3.98759 4.02144 4.10335 4.12540 4.16931 4.27283 4.29350 4.38155 4.41851 4.44963 4.57369 4.59744 4.62943 4.72314 4.72932 4.76854 4.80088 4.81925 4.82522 4.83834 4.94525 5.01597 5.08475 5.11719 5.15798 5.22829 5.34030 5.34490 5.35260 5.42762 5.49162 6.04762 6.25682 6.28978 6.35686 7.02793 7.31927 8.07618 8.30265 9.28092 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023474 B = 0.001576 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.519255 B =17761.838175 C =18401.681648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.250 4.250 8 H 0.080 0.920 9 N -0.751 5.751 10 C 0.155 3.845 11 C -0.115 4.115 12 C 0.078 3.922 13 O -0.403 6.403 14 C 0.085 3.915 15 C -0.126 4.126 16 C 0.118 3.882 17 N -0.606 5.606 18 C 0.516 3.484 19 O -0.574 6.574 20 C 0.075 3.925 21 H 0.102 0.898 22 C -0.148 4.148 23 C -0.120 4.120 24 C -0.157 4.157 25 C 0.051 3.949 26 O -0.393 6.393 27 C 0.102 3.898 28 C -0.156 4.156 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.061 0.939 48 H 0.102 0.898 49 H 0.066 0.934 50 H 0.112 0.888 51 H 0.102 0.898 52 H 0.096 0.904 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.796 -32.105 8.879 35.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.381 4.381 8 H 0.098 0.902 9 N -0.393 5.393 10 C 0.029 3.971 11 C -0.153 4.153 12 C 0.001 3.999 13 O -0.323 6.323 14 C 0.028 3.972 15 C -0.165 4.165 16 C -0.004 4.004 17 N -0.340 5.340 18 C 0.304 3.696 19 O -0.453 6.453 20 C 0.014 3.986 21 H 0.120 0.880 22 C -0.186 4.186 23 C -0.157 4.157 24 C -0.195 4.195 25 C -0.025 4.025 26 O -0.312 6.312 27 C -0.019 4.019 28 C -0.195 4.195 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.080 0.920 48 H 0.120 0.880 49 H 0.084 0.916 50 H 0.130 0.870 51 H 0.120 0.880 52 H 0.114 0.886 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.312 -32.500 8.401 35.117 hybrid contribution -0.309 1.143 -0.074 1.187 sum 10.003 -31.357 8.328 33.951 Atomic orbital electron populations 1.69837 1.06800 1.26179 1.59385 1.25664 0.96456 1.01419 1.03528 0.85066 0.77713 0.79033 0.77492 1.21313 1.22203 1.19096 1.19698 0.91703 0.85255 1.41467 0.90191 1.42619 1.05720 1.01433 1.89572 1.20674 0.93797 0.84359 0.98254 1.21489 0.98658 0.93035 1.02096 1.22356 0.91256 0.84856 1.01429 1.87919 1.34770 1.14346 1.95227 1.22201 0.96698 0.82357 0.95957 1.21929 0.98924 0.93572 1.02049 1.21591 1.01250 0.95106 0.82464 1.48159 1.53882 1.17177 1.14744 1.20765 0.78524 0.81137 0.89133 1.90686 1.40480 1.51993 1.62113 1.21984 0.95192 0.88787 0.92623 0.88046 1.22339 0.92231 1.04356 0.99630 1.21634 1.01635 0.97503 0.94916 1.22216 0.95083 0.98701 1.03487 1.22900 0.96703 1.00766 0.82119 1.88017 1.72018 1.38563 1.32574 1.22126 0.95093 0.87557 0.97115 1.22370 1.02280 0.97442 0.97380 0.93971 0.79600 0.95325 0.95563 0.92560 0.92378 0.91533 0.91935 0.89960 0.89463 0.92594 0.88732 0.90244 0.91906 0.87423 0.89907 0.89447 0.88652 0.92014 0.88016 0.91591 0.87016 0.87951 0.88562 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.25 -14.05 9.99 84.04 0.84 -13.21 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 9 N -0.75 -38.93 5.60 -343.45 -1.92 -40.85 16 10 C 0.16 6.07 6.26 86.38 0.54 6.61 16 11 C -0.11 -3.73 5.70 30.59 0.17 -3.55 16 12 C 0.08 1.84 5.75 71.98 0.41 2.25 16 13 O -0.40 -9.79 9.99 -148.98 -1.49 -11.28 16 14 C 0.09 1.41 2.57 30.62 0.08 1.49 16 15 C -0.13 -2.18 5.73 30.67 0.18 -2.00 16 16 C 0.12 1.86 6.43 86.36 0.56 2.42 16 17 N -0.61 -9.25 2.98 -819.74 -2.44 -11.69 16 18 C 0.52 10.91 7.12 87.66 0.62 11.53 16 19 O -0.57 -17.98 15.92 15.98 0.25 -17.73 16 20 C 0.07 1.13 2.22 29.88 0.07 1.19 16 21 H 0.10 1.10 7.42 -2.39 -0.02 1.09 16 22 C -0.15 -1.32 4.99 30.69 0.15 -1.16 16 23 C -0.12 -0.66 6.03 30.71 0.19 -0.47 16 24 C -0.16 -1.19 6.13 30.69 0.19 -1.00 16 25 C 0.05 0.58 6.84 72.01 0.49 1.07 16 26 O -0.39 -7.95 9.94 -129.99 -1.29 -9.24 16 27 C 0.10 0.85 4.99 86.22 0.43 1.28 16 28 C -0.16 -1.96 5.68 30.53 0.17 -1.79 16 29 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.37 20.74 7.67 -92.70 -0.71 20.03 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 1.33 7.84 -2.39 -0.02 1.31 16 36 H 0.06 1.31 8.09 -2.39 -0.02 1.29 16 37 H 0.08 1.05 7.79 -2.38 -0.02 1.04 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.60 7.00 -2.39 -0.02 1.59 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.11 0.45 5.46 -2.38 -0.01 0.43 16 44 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 46 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.06 0.61 8.14 -2.38 -0.02 0.60 16 48 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.11 0.50 4.64 -2.39 -0.01 0.49 16 51 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 52 H 0.10 1.00 7.84 -2.39 -0.02 0.98 16 53 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -78.56 410.46 1.15 -77.41 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.17 Total: 24.81 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.56 Total: 0.57 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.08 Total: -112.53 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -2.53 Total: -38.24 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -78.56 1.15 -77.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485442057.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.324 kcal (2) G-P(sol) polarization free energy of solvation -78.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds