Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46860 * 299.99795 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99608 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 180.27052 * 7 2 1 9 9 N 1.36935 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.67223 * 31.76284 * 10 9 7 12 12 C 1.54893 * 110.75633 * 268.33095 * 10 9 7 13 13 C 1.54267 * 104.19282 * 203.74048 * 12 10 9 14 14 C 1.53879 * 106.60134 * 23.60896 * 13 12 10 15 15 H 1.08996 * 110.03206 * 240.71356 * 14 13 12 16 16 C 1.52997 * 110.03196 * 119.28084 * 14 13 12 17 17 N 1.46495 * 109.47257 * 67.83445 * 16 14 13 18 18 C 1.34778 * 120.00207 * 179.97438 * 17 16 14 19 19 O 1.21281 * 119.99885 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99872 * 180.02562 * 18 17 16 21 21 C 1.53006 * 109.47023 * 180.02562 * 20 18 17 22 22 O 1.42901 * 109.46957 * 180.02562 * 21 20 18 23 23 C 1.42904 * 113.99722 * 180.02562 * 22 21 20 24 24 C 1.53178 * 109.54106 * 269.81826 * 23 22 21 25 25 C 1.53110 * 109.15456 * 183.24218 * 24 23 22 26 26 O 1.42898 * 109.48760 * 57.47690 * 25 24 23 27 27 C 1.42909 * 114.09622 * 298.88521 * 26 25 24 28 28 C 1.53091 * 109.41170 * 61.16013 * 27 26 25 29 29 C 1.54270 * 106.59395 * 359.97438 * 14 13 12 30 30 H 0.96996 * 119.99743 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 32 32 H 1.08998 * 110.48267 * 322.41716 * 12 10 9 33 33 H 1.08998 * 110.48580 * 85.06402 * 12 10 9 34 34 H 1.08994 * 110.03630 * 264.31920 * 13 12 10 35 35 H 1.09005 * 110.07246 * 142.91403 * 13 12 10 36 36 H 1.09003 * 109.46907 * 187.83566 * 16 14 13 37 37 H 1.08999 * 109.47243 * 307.83162 * 16 14 13 38 38 H 0.97004 * 119.99936 * 0.02562 * 17 16 14 39 39 H 1.08999 * 109.47802 * 300.00200 * 20 18 17 40 40 H 1.08999 * 109.47403 * 60.00515 * 20 18 17 41 41 H 1.08999 * 109.46831 * 299.99685 * 21 20 18 42 42 H 1.08991 * 109.47064 * 60.00113 * 21 20 18 43 43 H 1.09000 * 109.54226 * 29.99380 * 23 22 21 44 44 H 1.08996 * 109.52312 * 303.05425 * 24 23 22 45 45 H 1.09000 * 109.52177 * 63.25046 * 24 23 22 46 46 H 1.09003 * 109.40592 * 297.48848 * 25 24 23 47 47 H 1.08998 * 109.48078 * 177.50163 * 25 24 23 48 48 H 1.09003 * 109.47685 * 301.17824 * 27 26 25 49 49 H 1.08996 * 109.48875 * 181.14563 * 27 26 25 50 50 H 1.08998 * 109.51936 * 182.48633 * 28 27 26 51 51 H 1.08999 * 109.57467 * 62.32791 * 28 27 26 52 52 H 1.09002 * 110.48043 * 217.71140 * 29 14 13 53 53 H 1.09002 * 110.60152 * 95.12776 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0050 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0013 -3.5565 0.5374 12 6 2.2959 -4.1533 -1.4473 13 6 2.4851 -5.6771 -1.2983 14 6 1.7856 -6.0810 0.0114 15 1 2.5077 -6.5179 0.7011 16 6 0.6658 -7.0821 -0.2796 17 7 1.2478 -8.3462 -0.7373 18 6 0.4455 -9.3819 -1.0540 19 8 -0.7582 -9.2672 -0.9604 20 6 1.0442 -10.6824 -1.5242 21 6 -0.0755 -11.6836 -1.8154 22 8 0.4923 -12.9170 -2.2608 23 6 -0.4736 -13.9262 -2.5622 24 6 -0.7564 -14.7561 -1.3062 25 6 -1.7300 -15.8842 -1.6581 26 8 -1.1754 -16.6833 -2.7049 27 6 -0.9355 -15.9693 -3.9194 28 6 0.0716 -14.8461 -3.6588 29 6 1.1963 -4.7884 0.6130 30 1 -0.4849 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.4299 -3.9357 -2.0723 33 1 3.1933 -3.6965 -1.8646 34 1 3.5467 -5.9180 -1.2443 35 1 2.0274 -6.1950 -2.1411 36 1 0.0885 -7.2556 0.6285 37 1 0.0124 -6.6813 -1.0545 38 1 2.2106 -8.4381 -0.8118 39 1 1.6216 -10.5094 -2.4324 40 1 1.6976 -11.0829 -0.7491 41 1 -0.6532 -11.8568 -0.9074 42 1 -0.7285 -11.2830 -2.5906 43 1 -1.3960 -13.4573 -2.9047 44 1 0.1749 -15.1833 -0.9345 45 1 -1.1973 -14.1185 -0.5399 46 1 -2.6759 -15.4559 -1.9898 47 1 -1.9005 -16.5048 -0.7785 48 1 -1.8710 -15.5421 -4.2807 49 1 -0.5338 -16.6512 -4.6688 50 1 0.2225 -14.2728 -4.5735 51 1 1.0208 -15.2743 -3.3365 52 1 1.2908 -4.7954 1.6988 53 1 0.1521 -4.6715 0.3227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488961138.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -168.235441 kcal Electronic energy + Delta-G solvation = -28784.528657 eV Core-core repulsion = 24654.271163 eV Total energy + Delta-G solvation = -4130.257495 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.01720 -40.53070 -39.45681 -38.45345 -36.34141 -34.99389 -34.04541 -32.69556 -32.12551 -31.95359 -30.18147 -28.78351 -26.34100 -25.42057 -24.88107 -24.61254 -23.86260 -21.73951 -21.38762 -20.96379 -20.52706 -19.17679 -18.54354 -17.52326 -17.44755 -17.22410 -16.92660 -16.85002 -16.61361 -16.53169 -15.94099 -15.78760 -15.57705 -15.29028 -15.01018 -14.78762 -14.53381 -14.29170 -14.10063 -14.01706 -13.59732 -13.39912 -13.29900 -12.99012 -12.94710 -12.71147 -12.66462 -12.38225 -12.34021 -12.10540 -12.08628 -11.96820 -11.81534 -11.77503 -11.64941 -11.51349 -11.38112 -11.24759 -10.96091 -10.90778 -10.69233 -10.52449 -10.09390 -8.98104 -7.94439 -5.22439 1.46942 1.47520 1.57573 1.59922 1.95694 2.56172 2.72790 2.94571 3.38278 3.66151 3.70865 3.72055 3.75123 3.80676 3.82517 3.95638 4.02380 4.05177 4.16801 4.24513 4.30779 4.35993 4.39875 4.48118 4.50081 4.58380 4.62999 4.65907 4.68145 4.74337 4.78558 4.79152 4.80366 4.81656 4.85215 4.93087 5.02774 5.09586 5.09796 5.14355 5.18172 5.21361 5.37600 5.47364 5.50574 5.56954 5.64009 6.14702 6.20114 6.28595 6.54803 7.23509 7.33726 8.12563 8.33865 9.29604 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.041596 B = 0.001326 C = 0.001317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.986322 B =21117.995494 C =21261.724247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.238 4.238 8 H 0.077 0.923 9 N -0.737 5.737 10 C 0.163 3.837 11 H 0.056 0.944 12 C -0.140 4.140 13 C -0.107 4.107 14 C -0.083 4.083 15 H 0.104 0.896 16 C 0.133 3.867 17 N -0.711 5.711 18 C 0.513 3.487 19 O -0.591 6.591 20 C -0.129 4.129 21 C 0.079 3.921 22 O -0.389 6.389 23 C 0.083 3.917 24 C -0.176 4.176 25 C 0.061 3.939 26 O -0.403 6.403 27 C 0.060 3.940 28 C -0.149 4.149 29 C -0.118 4.118 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.419 0.581 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.108 0.892 48 H 0.062 0.938 49 H 0.114 0.886 50 H 0.089 0.911 51 H 0.073 0.927 52 H 0.068 0.932 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 -34.923 -5.454 35.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.375 5.375 10 C 0.054 3.946 11 H 0.075 0.925 12 C -0.180 4.180 13 C -0.145 4.145 14 C -0.102 4.102 15 H 0.122 0.878 16 C 0.009 3.991 17 N -0.363 5.363 18 C 0.301 3.699 19 O -0.472 6.472 20 C -0.169 4.169 21 C 0.002 3.998 22 O -0.309 6.309 23 C 0.025 3.975 24 C -0.214 4.214 25 C -0.016 4.016 26 O -0.322 6.322 27 C -0.016 4.016 28 C -0.187 4.187 29 C -0.157 4.157 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.256 0.744 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.126 0.874 48 H 0.080 0.920 49 H 0.132 0.868 50 H 0.107 0.893 51 H 0.092 0.908 52 H 0.087 0.913 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.013 -34.929 -5.366 35.467 hybrid contribution -0.318 1.891 0.027 1.918 sum 2.695 -33.037 -5.339 33.574 Atomic orbital electron populations 1.69831 1.06703 1.25866 1.59945 1.25561 0.96334 1.01119 1.04057 0.85094 0.78357 0.79929 0.76533 1.18813 1.22299 1.22158 1.19719 0.91497 0.85333 1.40443 0.90475 1.42629 1.05368 1.01206 1.88304 1.21486 0.94432 0.84534 0.94112 0.92547 1.22904 0.99953 0.96273 0.98901 1.22141 1.01428 0.94270 0.96676 1.21826 0.96661 0.93728 0.98030 0.87752 1.21328 0.95706 0.83112 0.98965 1.45874 1.11215 1.12150 1.67099 1.20911 0.86518 0.86117 0.76377 1.90721 1.16911 1.84296 1.55275 1.21427 0.99388 0.90378 1.05660 1.22103 0.95055 0.83815 0.98873 1.87833 1.34036 1.22260 1.86768 1.22246 0.91899 0.88316 0.95014 1.22702 1.01523 0.98468 0.98704 1.22665 0.94893 0.92740 0.91260 1.87923 1.83913 1.37377 1.22951 1.22736 0.97962 0.94150 0.86754 1.22279 1.00551 0.96981 0.98885 1.22503 0.99118 0.93959 1.00099 0.94158 0.79776 0.94374 0.93100 0.89436 0.91403 0.92252 0.93268 0.74351 0.85933 0.85807 0.93306 0.93397 0.91671 0.90846 0.90354 0.92161 0.87402 0.91988 0.86794 0.89270 0.90786 0.91277 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.33 13.06 21.65 0.28 -60.04 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.24 -13.22 9.96 84.04 0.84 -12.38 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -37.22 5.23 -316.89 -1.66 -38.88 16 10 C 0.16 6.17 3.56 46.27 0.16 6.34 16 11 H 0.06 2.13 8.09 -2.39 -0.02 2.11 16 12 C -0.14 -4.62 6.51 31.67 0.21 -4.41 16 13 C -0.11 -2.35 6.19 31.32 0.19 -2.15 16 14 C -0.08 -1.77 2.96 -10.07 -0.03 -1.80 16 15 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 16 C 0.13 2.93 4.69 86.38 0.41 3.33 16 17 N -0.71 -11.65 5.34 -463.08 -2.47 -14.13 16 18 C 0.51 10.17 7.83 87.66 0.69 10.85 16 19 O -0.59 -17.51 15.98 -3.03 -0.05 -17.56 16 20 C -0.13 -1.64 6.07 29.85 0.18 -1.46 16 21 C 0.08 1.28 5.04 71.98 0.36 1.64 16 22 O -0.39 -6.27 10.00 -148.98 -1.49 -7.76 16 23 C 0.08 1.11 2.69 30.71 0.08 1.19 16 24 C -0.18 -2.17 5.77 30.69 0.18 -1.99 16 25 C 0.06 0.67 6.84 72.02 0.49 1.16 16 26 O -0.40 -5.75 10.77 -148.98 -1.60 -7.35 16 27 C 0.06 0.59 6.84 72.01 0.49 1.08 16 28 C -0.15 -1.64 5.79 30.68 0.18 -1.46 16 29 C -0.12 -3.58 5.98 31.66 0.19 -3.39 16 30 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.37 20.38 7.76 -92.71 -0.72 19.66 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.40 7.61 -2.38 -0.02 1.38 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.42 3.99 8.35 -92.71 -0.77 3.21 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 0.87 7.93 -2.39 -0.02 0.85 16 42 H 0.05 0.87 8.04 -2.39 -0.02 0.85 16 43 H 0.07 0.84 7.79 -2.39 -0.02 0.82 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 0.93 7.97 -2.39 -0.02 0.91 16 46 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.05 1.78 7.73 -2.39 -0.02 1.76 16 Total: -1.00 -73.88 421.17 -0.48 -74.37 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: -0.61 Total: 30.56 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 5.09 Total: -7.54 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -3.85 Total: -113.05 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -3.14 Total: -32.67 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -73.88 -0.48 -74.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488961138.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.868 kcal (2) G-P(sol) polarization free energy of solvation -73.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds