Wall clock time and date at job start Sat Apr 11 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.61519 * 2 1 4 4 O 1.21282 * 120.00117 * 119.69757 * 3 2 1 5 5 N 1.34779 * 120.00261 * 299.70349 * 3 2 1 6 6 C 1.46921 * 120.62785 * 4.01745 * 5 3 2 7 7 C 1.52758 * 109.01369 * 233.58685 * 6 5 3 8 8 C 1.53046 * 109.38119 * 305.59177 * 7 6 5 9 9 C 1.53044 * 109.53533 * 61.23961 * 8 7 6 10 10 H 1.08995 * 109.52790 * 58.60274 * 9 8 7 11 11 N 1.46501 * 109.49413 * 178.68353 * 9 8 7 12 12 C 1.36935 * 120.00140 * 59.83344 * 11 9 8 13 13 H 1.07997 * 120.00085 * 318.29526 * 12 11 9 14 14 C 1.38816 * 119.99892 * 138.29295 * 12 11 9 15 15 N 1.31623 * 119.99944 * 341.21412 * 14 12 11 16 16 Si 1.86803 * 120.00011 * 161.21321 * 14 12 11 17 17 H 1.48500 * 109.47286 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46836 * 120.00156 * 16 14 12 19 19 H 1.48503 * 109.46991 * 240.00188 * 16 14 12 20 20 C 1.46504 * 119.99801 * 239.83855 * 11 9 8 21 21 C 1.52993 * 109.47472 * 84.66968 * 20 11 9 22 22 O 1.42905 * 109.47333 * 64.99655 * 21 20 11 23 23 C 1.46923 * 120.63270 * 184.30373 * 5 3 2 24 24 C 1.53176 * 109.54589 * 120.22243 * 2 1 3 25 25 C 1.53098 * 109.21543 * 176.87880 * 24 2 1 26 26 O 1.42901 * 109.41395 * 302.36462 * 25 24 2 27 27 C 1.42895 * 114.10068 * 61.15510 * 26 25 24 28 28 C 1.53090 * 109.41660 * 298.84276 * 27 26 25 29 29 H 1.09006 * 109.46992 * 291.22945 * 1 2 3 30 30 H 1.08995 * 109.47545 * 51.22892 * 1 2 3 31 31 H 1.08998 * 109.47143 * 171.23516 * 1 2 3 32 32 H 1.08998 * 109.58857 * 353.42672 * 6 5 3 33 33 H 1.09006 * 109.58617 * 113.84810 * 6 5 3 34 34 H 1.08999 * 109.56654 * 185.55479 * 7 6 5 35 35 H 1.08998 * 109.35447 * 65.49829 * 7 6 5 36 36 H 1.08994 * 109.46103 * 301.21907 * 8 7 6 37 37 H 1.08998 * 109.45761 * 181.25873 * 8 7 6 38 38 H 0.97000 * 119.99855 * 179.97438 * 15 14 12 39 39 H 1.09008 * 109.46988 * 204.67254 * 20 11 9 40 40 H 1.08994 * 109.47016 * 324.66512 * 20 11 9 41 41 H 1.08996 * 109.47485 * 184.99884 * 21 20 11 42 42 H 1.09008 * 109.47207 * 305.00263 * 21 20 11 43 43 H 0.96696 * 114.00161 * 179.97438 * 22 21 20 44 44 H 1.08992 * 109.58888 * 246.15404 * 23 5 3 45 45 H 1.09001 * 109.58834 * 6.43947 * 23 5 3 46 46 H 1.08996 * 109.52269 * 56.94493 * 24 2 1 47 47 H 1.08994 * 109.52393 * 296.81570 * 24 2 1 48 48 H 1.09000 * 109.47886 * 62.34311 * 25 24 2 49 49 H 1.08999 * 109.48203 * 182.37682 * 25 24 2 50 50 H 1.09005 * 109.48224 * 58.82576 * 27 26 25 51 51 H 1.09005 * 109.48518 * 178.86117 * 27 26 25 52 52 H 1.09007 * 109.52309 * 177.51245 * 28 27 26 53 53 H 1.09001 * 109.52152 * 297.63544 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0358 1.4195 0.0000 4 8 2.7296 1.8161 0.9124 5 7 1.7173 2.2485 -1.0138 6 6 0.8069 1.8109 -2.0807 7 6 1.4835 2.0289 -3.4328 8 6 1.9313 3.4879 -3.5473 9 6 2.9433 3.8008 -2.4427 10 1 3.7981 3.1303 -2.5311 11 7 3.3950 5.1884 -2.5722 12 6 2.4899 6.2131 -2.4950 13 1 1.5320 6.1257 -2.9861 14 6 2.8036 7.3642 -1.7854 15 7 3.7744 7.3455 -0.8968 16 14 1.8479 8.9398 -2.0917 17 1 0.8163 8.6987 -3.1322 18 1 1.1902 9.3724 -0.8325 19 1 2.7782 10.0009 -2.5542 20 6 4.8150 5.4797 -2.7844 21 6 5.1383 5.3820 -4.2766 22 8 4.4329 6.4033 -4.9848 23 6 2.2787 3.6048 -1.0764 24 6 2.0424 -0.7266 1.2473 25 6 3.5713 -0.7905 1.2007 26 8 3.9828 -1.4511 0.0021 27 6 3.5737 -0.7914 -1.1976 28 6 2.0449 -0.7275 -1.2473 29 1 -0.3633 0.3721 0.9580 30 1 -0.3634 0.6435 -0.8012 31 1 -0.3633 -1.0156 -0.1566 32 1 0.5781 0.7527 -1.9546 33 1 -0.1134 2.3935 -2.0377 34 1 0.7806 1.8001 -4.2339 35 1 2.3517 1.3746 -3.5120 36 1 1.0661 4.1425 -3.4432 37 1 2.3943 3.6503 -4.5206 38 1 3.9938 8.1500 -0.4012 39 1 5.0363 6.4865 -2.4298 40 1 5.4199 4.7595 -2.2336 41 1 6.2103 5.5109 -4.4254 42 1 4.8345 4.4043 -4.6509 43 1 4.5912 6.4015 -5.9387 44 1 1.4810 4.3367 -0.9497 45 1 3.0190 3.7307 -0.2863 46 1 1.6362 -1.7377 1.2725 47 1 1.7276 -0.1852 2.1393 48 1 3.9781 0.2206 1.2163 49 1 3.9386 -1.3437 2.0651 50 1 3.9805 0.2198 -1.2133 51 1 3.9426 -1.3452 -2.0610 52 1 1.7318 -0.1858 -2.1399 53 1 1.6388 -1.7387 -1.2738 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489171102.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:45 Heat of formation + Delta-G solvation = -117.929185 kcal Electronic energy + Delta-G solvation = -33344.901229 eV Core-core repulsion = 29216.825177 eV Total energy + Delta-G solvation = -4128.076052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.28319 -39.81436 -38.70687 -37.75558 -36.57614 -35.74081 -33.75887 -32.88906 -32.11605 -31.19835 -29.51562 -28.91644 -26.86507 -26.00777 -24.67602 -24.13780 -23.75356 -22.73972 -22.08901 -21.12317 -19.63755 -18.30802 -18.19860 -17.59027 -17.43982 -16.99329 -16.84589 -16.53750 -16.35082 -16.11324 -15.75204 -15.49327 -15.22252 -15.06639 -14.90737 -14.69482 -14.31483 -14.13906 -14.00373 -13.75401 -13.40023 -13.32019 -13.17827 -13.07358 -12.92960 -12.85934 -12.84728 -12.75979 -12.44742 -12.24241 -12.13480 -11.89371 -11.81922 -11.68389 -11.59070 -11.48146 -11.29032 -11.25872 -10.67501 -10.48698 -10.46260 -10.31209 -9.59570 -8.44989 -7.77988 -5.41492 1.42355 1.46094 1.54854 1.63427 2.02659 2.53551 2.93104 3.33084 3.35932 3.53860 3.56927 3.77098 3.78639 3.92533 4.00008 4.06979 4.11454 4.15243 4.30193 4.31141 4.46115 4.50317 4.51772 4.55734 4.59390 4.64332 4.66027 4.71203 4.76652 4.79918 4.86359 4.88860 4.91482 4.95944 4.99504 5.02765 5.04388 5.08238 5.15697 5.19987 5.24630 5.29508 5.47069 5.56504 5.62075 5.67827 5.77823 6.21725 6.52780 6.54736 7.17827 7.22184 7.25500 7.89076 8.43835 9.20019 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.003716 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.732847 B = 7533.226685 C = 7873.834204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.077 4.077 3 C 0.510 3.490 4 O -0.591 6.591 5 N -0.601 5.601 6 C 0.080 3.920 7 C -0.125 4.125 8 C -0.114 4.114 9 C 0.170 3.830 10 H 0.045 0.955 11 N -0.581 5.581 12 C -0.227 4.227 13 H 0.052 0.948 14 C -0.034 4.034 15 N -0.926 5.926 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.297 1.297 19 H -0.296 1.296 20 C 0.146 3.854 21 C 0.073 3.927 22 O -0.573 6.573 23 C 0.127 3.873 24 C -0.123 4.123 25 C 0.047 3.953 26 O -0.394 6.394 27 C 0.053 3.947 28 C -0.148 4.148 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.137 0.863 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.057 0.943 38 H 0.246 0.754 39 H 0.055 0.945 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.376 0.624 44 H 0.045 0.955 45 H 0.035 0.965 46 H 0.104 0.896 47 H 0.066 0.934 48 H 0.038 0.962 49 H 0.103 0.897 50 H 0.017 0.983 51 H 0.120 0.880 52 H 0.106 0.894 53 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 -20.632 -6.423 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.080 4.080 3 C 0.299 3.701 4 O -0.472 6.472 5 N -0.333 5.333 6 C -0.041 4.041 7 C -0.164 4.164 8 C -0.153 4.153 9 C 0.062 3.938 10 H 0.064 0.936 11 N -0.301 5.301 12 C -0.358 4.358 13 H 0.070 0.930 14 C -0.231 4.231 15 N -0.571 5.571 16 Si 0.780 3.220 17 H -0.190 1.190 18 H -0.224 1.224 19 H -0.223 1.223 20 C 0.019 3.981 21 C -0.007 4.007 22 O -0.378 6.378 23 C 0.002 3.998 24 C -0.161 4.161 25 C -0.029 4.029 26 O -0.314 6.314 27 C -0.024 4.024 28 C -0.185 4.185 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.223 0.777 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.123 0.877 47 H 0.085 0.915 48 H 0.056 0.944 49 H 0.121 0.879 50 H 0.035 0.965 51 H 0.138 0.862 52 H 0.124 0.876 53 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.320 -20.309 -5.248 21.907 hybrid contribution 0.321 2.115 0.060 2.140 sum -5.999 -18.194 -5.187 19.847 Atomic orbital electron populations 1.22273 0.90021 1.05378 1.03495 1.20932 0.99030 0.89344 0.98701 1.21372 0.79380 0.88538 0.80791 1.90634 1.41056 1.78158 1.37386 1.48301 1.46716 1.13621 1.24623 1.22638 0.92213 1.03126 0.86121 1.21903 1.01701 0.95610 0.97166 1.21786 0.98824 0.96537 0.98192 1.20758 0.94953 0.85929 0.92143 0.93636 1.43797 1.03130 1.00591 1.82592 1.18864 0.98334 0.94986 1.23586 0.93048 1.25844 0.99370 1.02400 0.95469 1.70153 1.34405 1.27560 1.24944 0.85488 0.78443 0.81078 0.77038 1.18995 1.22423 1.22302 1.20837 0.84975 1.00507 0.91750 1.22781 0.93649 0.89758 0.94472 1.86755 1.72271 1.55319 1.23470 1.21738 0.97029 0.81810 0.99217 1.22003 0.95921 1.01544 0.96628 1.22788 0.95017 0.97484 0.87631 1.87850 1.77918 1.51284 1.14306 1.22711 0.94962 0.96543 0.88166 1.22664 0.95833 1.03226 0.96797 0.92778 0.89752 0.87921 0.84607 0.90857 0.87434 0.90961 0.93370 0.92454 0.94538 0.92709 0.94836 0.93694 0.94045 0.77707 0.93709 0.94631 0.87733 0.91543 0.94390 0.87875 0.96464 0.86213 0.87588 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.11 71.98 0.58 -1.75 16 2 C -0.08 -1.64 0.50 -52.77 -0.03 -1.67 16 3 C 0.51 16.65 5.16 87.66 0.45 17.10 16 4 O -0.59 -25.52 13.29 -3.04 -0.04 -25.56 16 5 N -0.60 -19.14 2.98 -819.76 -2.44 -21.58 16 6 C 0.08 1.68 3.97 86.22 0.34 2.02 16 7 C -0.13 -2.58 5.76 30.53 0.18 -2.40 16 8 C -0.11 -3.63 5.10 30.62 0.16 -3.47 16 9 C 0.17 6.85 2.79 45.07 0.13 6.97 16 10 H 0.05 1.82 7.87 -2.39 -0.02 1.80 16 11 N -0.58 -28.25 2.29 -677.60 -1.55 -29.80 16 12 C -0.23 -12.26 7.83 84.03 0.66 -11.60 16 13 H 0.05 2.79 6.93 -2.91 -0.02 2.77 16 14 C -0.03 -1.96 4.93 84.86 0.42 -1.55 16 15 N -0.93 -56.50 11.70 21.65 0.25 -56.25 16 16 Si 0.95 46.76 29.59 68.60 2.03 48.79 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 19 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 20 C 0.15 6.96 5.56 86.38 0.48 7.44 16 21 C 0.07 2.75 7.39 71.98 0.53 3.28 16 22 O -0.57 -22.67 13.39 -148.98 -1.99 -24.67 16 23 C 0.13 5.46 5.76 86.36 0.50 5.95 16 24 C -0.12 -2.72 4.55 30.69 0.14 -2.58 16 25 C 0.05 1.26 6.55 72.01 0.47 1.73 16 26 O -0.39 -10.31 10.76 -148.98 -1.60 -11.92 16 27 C 0.05 1.17 6.62 72.01 0.48 1.64 16 28 C -0.15 -2.40 4.59 30.73 0.14 -2.26 16 29 H 0.05 0.95 8.13 -2.38 -0.02 0.93 16 30 H 0.08 1.16 4.62 -2.39 -0.01 1.15 16 31 H 0.10 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.14 1.91 2.68 -2.39 -0.01 1.90 16 33 H 0.07 1.53 8.13 -2.38 -0.02 1.51 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.38 7.64 -2.39 -0.02 1.36 16 36 H 0.05 1.71 7.09 -2.39 -0.02 1.70 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 39 H 0.05 3.09 5.82 -2.38 -0.01 3.08 16 40 H 0.03 1.56 8.04 -2.39 -0.02 1.55 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.38 10.21 9.12 -74.06 -0.68 9.54 16 44 H 0.04 2.16 7.50 -2.39 -0.02 2.14 16 45 H 0.03 1.86 7.03 -2.39 -0.02 1.84 16 46 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 1.64 8.02 -2.39 -0.02 1.62 16 48 H 0.04 1.33 5.82 -2.39 -0.01 1.32 16 49 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.02 0.49 7.38 -2.38 -0.02 0.47 16 51 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 52 H 0.11 1.41 4.19 -2.38 -0.01 1.40 16 53 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -78.15 388.05 0.52 -77.64 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.24 Total: 24.47 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 5.62 Total: 18.88 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -3.74 Total: -107.63 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -3.64 Total: -62.15 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -78.15 0.52 -77.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489171102.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.294 kcal (2) G-P(sol) polarization free energy of solvation -78.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds