Wall clock time and date at job start Sat Apr 11 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.18840 * 2 1 4 4 C 1.47092 * 109.32802 * 119.57260 * 2 1 3 5 5 C 1.52572 * 114.32543 * 183.06355 * 4 2 1 6 6 H 1.09001 * 109.48846 * 34.97109 * 5 4 2 7 7 N 1.46496 * 109.49004 * 155.01722 * 5 4 2 8 8 C 1.34784 * 119.99719 * 205.27321 * 7 5 4 9 9 O 1.21284 * 119.99744 * 359.72581 * 8 7 5 10 10 C 1.50692 * 119.99878 * 179.72346 * 8 7 5 11 11 O 1.42902 * 109.47450 * 179.97438 * 10 8 7 12 12 C 1.42891 * 114.00312 * 180.02562 * 11 10 8 13 13 H 1.09004 * 110.46325 * 27.39210 * 12 11 10 14 14 C 1.54514 * 110.51298 * 150.00315 * 12 11 10 15 15 C 1.54480 * 104.06318 * 118.64351 * 14 12 11 16 16 O 1.44424 * 104.80239 * 23.98054 * 15 14 12 17 17 C 1.44425 * 105.27539 * 319.48495 * 16 15 14 18 18 C 1.50880 * 109.35559 * 274.98463 * 5 4 2 19 19 C 1.53974 * 110.10992 * 91.87502 * 18 5 4 20 20 N 1.47600 * 112.12821 * 319.45908 * 19 18 5 21 21 C 1.36931 * 118.64588 * 137.85882 * 20 19 18 22 22 H 1.08002 * 120.00241 * 205.57213 * 21 20 19 23 23 C 1.38818 * 120.00199 * 25.56483 * 21 20 19 24 24 N 1.31620 * 119.99429 * 17.90362 * 23 21 20 25 25 Si 1.86795 * 120.00259 * 197.90611 * 23 21 20 26 26 H 1.48505 * 109.47054 * 90.00171 * 25 23 21 27 27 H 1.48496 * 109.47150 * 209.99947 * 25 23 21 28 28 H 1.48502 * 109.47129 * 330.00178 * 25 23 21 29 29 C 1.44581 * 122.71174 * 317.83557 * 20 19 18 30 30 H 1.09003 * 109.46421 * 300.43470 * 1 2 3 31 31 H 1.08998 * 109.46983 * 60.42861 * 1 2 3 32 32 H 1.08990 * 109.47282 * 180.43661 * 1 2 3 33 33 H 1.08997 * 109.47311 * 179.56791 * 3 2 1 34 34 H 1.09002 * 109.47407 * 299.57024 * 3 2 1 35 35 H 1.09006 * 109.47072 * 59.56876 * 3 2 1 36 36 H 1.08993 * 108.51945 * 61.80366 * 4 2 1 37 37 H 1.09003 * 108.50699 * 304.31059 * 4 2 1 38 38 H 0.96999 * 120.00559 * 24.99506 * 7 5 4 39 39 H 1.09007 * 109.47522 * 300.00402 * 10 8 7 40 40 H 1.09008 * 109.47431 * 59.99936 * 10 8 7 41 41 H 1.08995 * 110.50847 * 237.29084 * 14 12 11 42 42 H 1.08999 * 110.50668 * 359.86022 * 14 12 11 43 43 H 1.09006 * 110.37083 * 142.81301 * 15 14 12 44 44 H 1.09002 * 110.37090 * 265.14946 * 15 14 12 45 45 H 1.08998 * 110.36961 * 281.68119 * 17 16 15 46 46 H 1.09003 * 110.36702 * 159.34219 * 17 16 15 47 47 H 1.09003 * 109.36440 * 212.08007 * 18 5 4 48 48 H 1.09000 * 109.36826 * 331.68866 * 18 5 4 49 49 H 1.09004 * 108.96302 * 198.76833 * 19 18 5 50 50 H 1.08999 * 108.94520 * 80.13815 * 19 18 5 51 51 H 0.97005 * 119.99544 * 179.97438 * 24 23 21 52 52 H 1.08999 * 109.45060 * 330.71236 * 29 20 19 53 53 H 1.08995 * 109.42982 * 210.77191 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0329 1.4449 0.0000 4 6 2.0169 -0.6850 1.2072 5 6 3.5349 -0.6863 1.3600 6 1 3.9399 0.2498 0.9755 7 7 3.8835 -0.8246 2.7762 8 6 5.0644 -0.3580 3.2282 9 8 5.8406 0.1718 2.4614 10 6 5.4204 -0.4946 4.6861 11 8 6.7125 0.0707 4.9160 12 6 7.1480 -0.0079 6.2747 13 1 6.6877 -0.8608 6.7736 14 6 8.6884 -0.1064 6.3447 15 6 9.1099 1.1562 7.1286 16 8 7.9461 1.5141 7.9053 17 6 6.8212 1.3025 7.0246 18 6 4.1147 -1.8428 0.5836 19 6 4.4799 -1.3928 -0.8429 20 7 3.4624 -0.4923 -1.4194 21 6 3.8804 0.6049 -2.1241 22 1 3.2423 1.4729 -2.2005 23 6 5.1244 0.6016 -2.7401 24 7 5.7486 -0.5368 -2.9562 25 14 5.9124 2.2127 -3.2621 26 1 6.7411 2.7419 -2.1492 27 1 6.7706 1.9814 -4.4517 28 1 4.8519 3.1957 -3.6004 29 6 2.0425 -0.7211 -1.2712 30 1 -0.3632 0.5206 0.8861 31 1 -0.3633 0.5072 -0.8938 32 1 -0.3633 -1.0275 0.0078 33 1 3.1228 1.4504 0.0077 34 1 1.6734 1.9548 -0.8938 35 1 1.6607 1.9592 0.8861 36 1 1.6707 -1.7182 1.1824 37 1 1.5816 -0.1988 2.0803 38 1 3.2627 -1.2482 3.3894 39 1 4.6809 0.0299 5.2914 40 1 5.4318 -1.5496 4.9601 41 1 8.9895 -1.0067 6.8802 42 1 9.1175 -0.0975 5.3428 43 1 9.9504 0.9320 7.7856 44 1 9.3692 1.9610 6.4407 45 1 6.7295 2.1298 6.3208 46 1 5.9033 1.1906 7.6018 47 1 5.0101 -2.2047 1.0890 48 1 3.3812 -2.6474 0.5319 49 1 4.5746 -2.2731 -1.4787 50 1 5.4377 -0.8732 -0.8157 51 1 6.6177 -0.5392 -3.3870 52 1 1.8547 -1.7911 -1.1820 53 1 1.5194 -0.3323 -2.1448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489342107.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:08 Heat of formation + Delta-G solvation = -123.602385 kcal Electronic energy + Delta-G solvation = -31733.293433 eV Core-core repulsion = 27604.971373 eV Total energy + Delta-G solvation = -4128.322060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.35174 -40.64659 -39.81090 -37.95829 -36.30604 -35.92716 -33.35851 -32.58432 -32.13130 -29.94151 -29.17697 -28.20263 -28.04388 -27.17870 -25.43519 -23.99426 -23.64507 -22.20567 -21.73344 -21.14606 -19.59240 -18.61682 -18.37670 -18.23870 -17.29948 -17.22272 -16.97709 -16.66445 -16.18448 -16.11245 -15.93307 -15.56209 -15.27382 -15.26428 -14.81218 -14.72082 -14.49298 -14.11368 -13.79488 -13.66275 -13.44796 -13.18225 -13.12850 -12.99977 -12.76477 -12.73216 -12.64289 -12.58043 -12.41890 -12.29267 -12.22599 -11.99501 -11.79813 -11.72070 -11.45453 -11.37484 -11.25432 -11.03200 -10.96952 -10.73692 -10.60086 -10.39693 -10.02185 -8.60477 -7.83213 -5.24507 1.38790 1.45288 1.48832 1.66113 1.82239 2.51332 2.80085 3.14643 3.30941 3.51731 3.68540 3.74842 3.79984 3.85368 3.94108 4.03219 4.16848 4.20451 4.22208 4.28373 4.31375 4.38653 4.46694 4.61929 4.67364 4.70555 4.73672 4.77321 4.86491 4.88340 4.91261 4.92326 4.98169 4.99183 5.01801 5.11367 5.12871 5.24455 5.32927 5.39273 5.49330 5.56522 5.59862 5.63735 5.69070 5.74643 5.81165 5.87228 6.11258 6.44194 6.68432 7.21802 7.39395 8.00210 8.38025 9.22046 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.003084 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.286841 B = 9077.615219 C =10443.145475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.126 4.126 4 C -0.092 4.092 5 C 0.157 3.843 6 H 0.061 0.939 7 N -0.707 5.707 8 C 0.497 3.503 9 O -0.579 6.579 10 C 0.049 3.951 11 O -0.386 6.386 12 C 0.052 3.948 13 H 0.111 0.889 14 C -0.158 4.158 15 C 0.042 3.958 16 O -0.389 6.389 17 C 0.021 3.979 18 C -0.132 4.132 19 C 0.195 3.805 20 N -0.596 5.596 21 C -0.243 4.243 22 H 0.072 0.928 23 C -0.053 4.053 24 N -0.935 5.935 25 Si 0.945 3.055 26 H -0.301 1.301 27 H -0.295 1.295 28 H -0.263 1.263 29 C 0.161 3.839 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.417 0.583 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.115 0.885 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.120 0.880 47 H 0.045 0.955 48 H 0.074 0.926 49 H -0.006 1.006 50 H 0.025 0.975 51 H 0.243 0.757 52 H 0.044 0.956 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.851 -3.742 23.549 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.184 4.184 4 C -0.130 4.130 5 C 0.053 3.947 6 H 0.079 0.921 7 N -0.361 5.361 8 C 0.284 3.716 9 O -0.458 6.458 10 C -0.030 4.030 11 O -0.304 6.304 12 C -0.006 4.006 13 H 0.129 0.871 14 C -0.196 4.196 15 C -0.035 4.035 16 O -0.308 6.308 17 C -0.056 4.056 18 C -0.172 4.172 19 C 0.069 3.931 20 N -0.317 5.317 21 C -0.373 4.373 22 H 0.089 0.911 23 C -0.248 4.248 24 N -0.582 5.582 25 Si 0.775 3.225 26 H -0.229 1.229 27 H -0.222 1.222 28 H -0.187 1.187 29 C 0.034 3.966 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.255 0.745 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.133 0.867 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.138 0.862 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.012 0.988 50 H 0.044 0.956 51 H 0.052 0.948 52 H 0.063 0.937 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.064 -3.253 22.994 24.001 hybrid contribution 0.928 0.598 -0.949 1.456 sum -5.136 -2.655 22.045 22.791 Atomic orbital electron populations 1.21728 0.92363 1.02324 1.01913 1.20323 0.96313 0.95506 0.96496 1.21839 1.00874 0.96044 0.99610 1.20541 0.91783 1.02085 0.98611 1.20273 0.96419 0.98671 0.79337 0.92112 1.45906 1.18840 1.60861 1.10457 1.21121 0.81678 0.77713 0.91077 1.90809 1.50888 1.44476 1.59612 1.22460 0.87036 1.01833 0.91701 1.88105 1.33552 1.81347 1.27445 1.23769 0.95975 0.98916 0.81959 0.87142 1.23082 0.94064 1.00286 1.02129 1.23543 0.89691 0.95366 0.94852 1.89109 1.16296 1.88621 1.36769 1.24048 0.91329 0.96766 0.93445 1.22236 1.00162 0.98254 0.96502 1.20575 0.91530 0.91558 0.89409 1.43763 1.00772 1.27639 1.59564 1.19529 1.00982 0.93374 1.23443 0.91074 1.25616 1.00828 0.98479 0.99900 1.70218 1.15708 1.25149 1.47127 0.85575 0.78803 0.81507 0.76590 1.22926 1.22162 1.18739 1.20972 0.83408 0.97006 0.95168 0.91521 0.93232 0.91484 0.94096 0.94537 0.93098 0.90314 0.90052 0.74503 0.86698 0.86640 0.87446 0.90575 0.86657 0.92794 0.92818 0.86219 0.93599 0.90743 0.98761 0.95641 0.94763 0.93721 0.94603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.37 71.98 0.60 -2.21 16 2 C -0.08 -2.51 0.72 -53.38 -0.04 -2.55 16 3 C -0.13 -4.46 6.77 71.98 0.49 -3.98 16 4 C -0.09 -2.39 3.40 28.62 0.10 -2.29 16 5 C 0.16 5.26 1.98 44.16 0.09 5.34 16 6 H 0.06 2.74 4.73 -2.39 -0.01 2.73 16 7 N -0.71 -17.62 4.93 -446.51 -2.20 -19.82 16 8 C 0.50 15.15 7.74 87.65 0.68 15.82 16 9 O -0.58 -26.48 16.16 15.99 0.26 -26.22 16 10 C 0.05 0.91 6.25 71.23 0.45 1.35 16 11 O -0.39 -9.72 9.51 -129.95 -1.24 -10.95 16 12 C 0.05 0.88 3.61 31.61 0.11 0.99 16 13 H 0.11 1.15 7.82 -2.38 -0.02 1.13 16 14 C -0.16 -2.63 6.90 31.61 0.22 -2.42 16 15 C 0.04 0.70 7.63 72.49 0.55 1.26 16 16 O -0.39 -7.84 11.65 -148.98 -1.74 -9.57 16 17 C 0.02 0.37 7.38 72.49 0.53 0.90 16 18 C -0.13 -5.01 5.39 30.23 0.16 -4.85 16 19 C 0.20 9.90 4.68 86.50 0.41 10.30 16 20 N -0.60 -29.42 1.86 -698.31 -1.30 -30.71 16 21 C -0.24 -13.49 7.64 84.04 0.64 -12.85 16 22 H 0.07 3.86 6.44 -2.91 -0.02 3.84 16 23 C -0.05 -3.16 4.81 84.86 0.41 -2.75 16 24 N -0.93 -58.59 11.10 21.65 0.24 -58.35 16 25 Si 0.95 48.60 29.59 68.60 2.03 50.63 16 26 H -0.30 -16.05 7.11 99.48 0.71 -15.34 16 27 H -0.29 -15.12 7.11 99.48 0.71 -14.42 16 28 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 29 C 0.16 6.26 4.70 87.38 0.41 6.68 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.04 1.80 4.48 -2.39 -0.01 1.79 16 34 H 0.04 1.32 7.50 -2.39 -0.02 1.31 16 35 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.08 1.72 7.36 -2.39 -0.02 1.70 16 37 H 0.08 1.66 8.01 -2.39 -0.02 1.64 16 38 H 0.42 6.00 8.60 -92.71 -0.80 5.21 16 39 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.12 1.31 8.11 -2.38 -0.02 1.29 16 41 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.58 8.00 -2.39 -0.02 1.56 16 43 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 1.13 8.08 -2.39 -0.02 1.11 16 46 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.05 1.81 7.86 -2.39 -0.02 1.79 16 48 H 0.07 2.40 7.32 -2.39 -0.02 2.38 16 49 H -0.01 -0.31 8.05 -2.39 -0.02 -0.33 16 50 H 0.02 1.53 6.33 -2.39 -0.02 1.52 16 51 H 0.24 15.02 8.31 -92.70 -0.77 14.25 16 52 H 0.04 1.61 8.07 -2.39 -0.02 1.59 16 53 H 0.04 1.46 7.95 -2.39 -0.02 1.44 16 Total: -1.00 -82.55 400.35 1.96 -80.59 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.10 Total: 15.64 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.81 Total: 8.77 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -3.26 Total: -108.88 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -2.71 Total: -46.74 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Total: -82.55 1.96 -80.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489342107.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.016 kcal (2) G-P(sol) polarization free energy of solvation -82.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds