Wall clock time and date at job start Sat Apr 11 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.36719 * 2 1 4 4 C 1.50882 * 109.37130 * 119.74594 * 2 1 3 5 5 C 1.52564 * 109.35731 * 212.08213 * 4 2 1 6 6 H 1.09009 * 108.38839 * 36.14818 * 5 4 2 7 7 N 1.46497 * 108.51245 * 153.72647 * 5 4 2 8 8 C 1.34780 * 120.00197 * 209.76961 * 7 5 4 9 9 O 1.21278 * 119.99830 * 359.97438 * 8 7 5 10 10 C 1.50702 * 119.99974 * 180.02562 * 8 7 5 11 11 O 1.42905 * 109.46848 * 179.97438 * 10 8 7 12 12 C 1.42895 * 113.99631 * 179.97438 * 11 10 8 13 13 H 1.08997 * 110.46236 * 330.70541 * 12 11 10 14 14 C 1.54509 * 110.51245 * 208.09745 * 12 11 10 15 15 C 1.54480 * 104.06336 * 241.35797 * 14 12 11 16 16 O 1.44421 * 104.80307 * 23.98183 * 15 14 12 17 17 C 1.44790 * 105.29626 * 319.44804 * 16 15 14 18 18 C 1.47092 * 114.32831 * 274.98477 * 5 4 2 19 19 C 1.54867 * 110.32059 * 62.80065 * 18 5 4 20 20 N 1.44580 * 109.60205 * 288.73699 * 19 18 5 21 21 C 1.36944 * 118.64168 * 270.72807 * 20 19 18 22 22 H 1.07996 * 120.00091 * 27.25325 * 21 20 19 23 23 C 1.38818 * 119.99496 * 207.24745 * 21 20 19 24 24 N 1.31617 * 119.99916 * 16.35021 * 23 21 20 25 25 Si 1.86792 * 119.99830 * 196.34141 * 23 21 20 26 26 H 1.48507 * 109.47152 * 90.00351 * 25 23 21 27 27 H 1.48498 * 109.47485 * 210.00311 * 25 23 21 28 28 H 1.48506 * 109.47674 * 330.00669 * 25 23 21 29 29 C 1.47602 * 122.71161 * 90.72427 * 20 19 18 30 30 H 1.08998 * 109.46982 * 300.24980 * 1 2 3 31 31 H 1.08993 * 109.47502 * 60.25606 * 1 2 3 32 32 H 1.09008 * 109.46919 * 180.25658 * 1 2 3 33 33 H 1.08994 * 109.47601 * 180.67972 * 3 2 1 34 34 H 1.09004 * 109.47024 * 300.68134 * 3 2 1 35 35 H 1.08999 * 109.46676 * 60.67321 * 3 2 1 36 36 H 1.09002 * 109.49137 * 92.11568 * 4 2 1 37 37 H 1.09002 * 109.50815 * 332.06320 * 4 2 1 38 38 H 0.97003 * 120.00141 * 29.77349 * 7 5 4 39 39 H 1.09002 * 109.46855 * 299.99697 * 10 8 7 40 40 H 1.08994 * 109.47406 * 59.99819 * 10 8 7 41 41 H 1.09001 * 110.51111 * 0.02562 * 14 12 11 42 42 H 1.08998 * 110.51148 * 122.71550 * 14 12 11 43 43 H 1.09000 * 110.37297 * 142.80515 * 15 14 12 44 44 H 1.08994 * 110.37700 * 265.03451 * 15 14 12 45 45 H 1.08996 * 110.42506 * 281.78381 * 17 16 15 46 46 H 1.08997 * 110.48787 * 159.32597 * 17 16 15 47 47 H 1.09000 * 109.32940 * 183.05970 * 18 5 4 48 48 H 1.08998 * 109.32642 * 302.53383 * 18 5 4 49 49 H 1.08999 * 109.45131 * 48.77767 * 19 18 5 50 50 H 1.09002 * 109.44912 * 168.70252 * 19 18 5 51 51 H 0.97004 * 119.99791 * 179.97438 * 24 23 21 52 52 H 1.09002 * 108.94444 * 197.18121 * 29 20 19 53 53 H 1.09002 * 108.87592 * 78.51143 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4435 0.0000 4 6 2.0305 -0.7062 1.2358 5 6 3.3487 -0.0784 1.6781 6 1 3.3000 0.9938 1.4876 7 7 3.5023 -0.2865 3.1201 8 6 4.1879 0.6069 3.8607 9 8 4.6781 1.5827 3.3332 10 6 4.3464 0.3925 5.3439 11 8 5.1066 1.4663 5.9018 12 6 5.3153 1.3595 7.3114 13 1 4.4890 0.8248 7.7795 14 6 5.4800 2.7605 7.9419 15 6 6.9021 2.7359 8.5448 16 8 7.6066 1.7280 7.7875 17 6 6.6557 0.6510 7.6079 18 6 4.5358 -0.6200 0.9990 19 6 4.4645 -0.3311 -0.5208 20 7 3.4428 -1.1572 -1.1241 21 6 3.7904 -2.3986 -1.5861 22 1 4.6217 -2.9265 -1.1428 23 6 3.0741 -2.9784 -2.6243 24 7 2.2871 -2.2372 -3.3751 25 14 3.2273 -4.8103 -2.9558 26 1 2.2019 -5.5429 -2.1701 27 1 3.0211 -5.0704 -4.4032 28 1 4.5807 -5.2740 -2.5574 29 6 2.0405 -0.7177 -1.2626 30 1 -0.3633 0.5177 0.8877 31 1 -0.3634 0.5098 -0.8922 32 1 -0.3633 -1.0277 0.0046 33 1 3.1273 1.4456 -0.0122 34 1 1.6631 1.9601 -0.8838 35 1 1.6830 1.9531 0.8960 36 1 2.1869 -1.7618 1.0133 37 1 1.2949 -0.6081 2.0342 38 1 3.1106 -1.0672 3.5420 39 1 3.3632 0.3606 5.8135 40 1 4.8646 -0.5498 5.5216 41 1 5.4018 3.5345 7.1785 42 1 4.7366 2.9173 8.7235 43 1 7.3826 3.7067 8.4232 44 1 6.8627 2.4623 9.5991 45 1 6.5776 0.0568 8.5183 46 1 6.9465 0.0217 6.7668 47 1 5.4312 -0.1562 1.4128 48 1 4.5834 -1.6970 1.1598 49 1 4.2223 0.7197 -0.6796 50 1 5.4284 -0.5542 -0.9782 51 1 1.7869 -2.6423 -4.1008 52 1 1.4137 -1.5891 -1.4524 53 1 1.9663 -0.0373 -2.1110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489342112.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:17 Heat of formation + Delta-G solvation = -111.198040 kcal Electronic energy + Delta-G solvation = -31418.475817 eV Core-core repulsion = 27290.691650 eV Total energy + Delta-G solvation = -4127.784168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.53117 -40.63389 -39.78445 -37.83145 -36.34890 -35.76900 -33.82290 -32.52491 -31.89248 -29.84398 -29.20876 -28.26013 -28.06478 -27.34517 -25.72466 -23.92011 -23.47509 -22.15661 -21.73937 -21.22514 -19.52368 -18.56656 -18.36291 -18.15902 -17.43846 -17.26692 -16.88472 -16.80413 -16.43427 -16.00498 -15.94382 -15.51771 -15.32090 -15.14685 -14.84244 -14.49348 -14.22789 -14.11224 -13.84460 -13.73995 -13.54224 -13.32191 -12.99981 -12.99086 -12.91049 -12.86203 -12.65768 -12.63134 -12.38137 -12.27300 -12.13204 -12.00788 -11.79352 -11.73239 -11.62831 -11.51412 -11.08520 -11.06810 -10.79093 -10.73025 -10.42902 -10.41316 -9.99954 -8.61655 -7.82492 -5.29177 1.46841 1.48172 1.56645 1.65181 1.85940 2.53107 2.96074 3.01649 3.29719 3.56352 3.67816 3.73807 3.83521 3.87939 4.05179 4.08267 4.13440 4.19763 4.21174 4.22762 4.33154 4.43186 4.45067 4.47694 4.51744 4.73369 4.74199 4.74573 4.81268 4.82509 4.84500 4.86401 4.90108 4.99976 5.04525 5.08431 5.13903 5.19992 5.25760 5.29940 5.42201 5.51370 5.56047 5.61251 5.68473 5.74554 5.74964 5.87992 6.16775 6.43689 6.66158 7.21870 7.33059 7.97639 8.37479 9.21916 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.002403 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.209934 B =11650.709188 C =12434.385705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.148 4.148 4 C -0.090 4.090 5 C 0.149 3.851 6 H 0.085 0.915 7 N -0.712 5.712 8 C 0.505 3.495 9 O -0.577 6.577 10 C 0.045 3.955 11 O -0.385 6.385 12 C 0.048 3.952 13 H 0.116 0.884 14 C -0.154 4.154 15 C 0.040 3.960 16 O -0.408 6.408 17 C 0.018 3.982 18 C -0.135 4.135 19 C 0.149 3.851 20 N -0.598 5.598 21 C -0.262 4.262 22 H 0.061 0.939 23 C -0.045 4.045 24 N -0.932 5.932 25 Si 0.961 3.039 26 H -0.283 1.283 27 H -0.298 1.298 28 H -0.273 1.273 29 C 0.205 3.795 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.413 0.587 39 H 0.117 0.883 40 H 0.105 0.895 41 H 0.069 0.931 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.047 0.953 48 H 0.053 0.947 49 H 0.049 0.951 50 H 0.032 0.968 51 H 0.248 0.752 52 H 0.042 0.958 53 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 5.033 26.610 27.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.085 4.085 3 C -0.204 4.204 4 C -0.128 4.128 5 C 0.045 3.955 6 H 0.103 0.897 7 N -0.365 5.365 8 C 0.291 3.709 9 O -0.455 6.455 10 C -0.034 4.034 11 O -0.303 6.303 12 C -0.009 4.009 13 H 0.134 0.866 14 C -0.191 4.191 15 C -0.036 4.036 16 O -0.328 6.328 17 C -0.059 4.059 18 C -0.176 4.176 19 C 0.022 3.978 20 N -0.320 5.320 21 C -0.393 4.393 22 H 0.079 0.921 23 C -0.241 4.241 24 N -0.578 5.578 25 Si 0.790 3.210 26 H -0.209 1.209 27 H -0.225 1.225 28 H -0.198 1.198 29 C 0.080 3.920 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.250 0.750 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.111 0.889 44 H 0.104 0.896 45 H 0.116 0.884 46 H 0.104 0.896 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.050 0.950 51 H 0.057 0.943 52 H 0.061 0.939 53 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges -0.788 5.876 25.913 26.583 hybrid contribution -0.101 -1.494 -0.808 1.701 sum -0.889 4.382 25.106 25.501 Atomic orbital electron populations 1.21750 0.93111 1.01548 1.01931 1.20803 0.96412 0.95356 0.95954 1.22291 1.01358 0.95654 1.01120 1.21170 0.94864 0.99913 0.96830 1.20065 0.94759 1.01960 0.78694 0.89679 1.46146 1.55293 1.26503 1.08595 1.20953 0.77681 0.82360 0.89870 1.90713 1.48872 1.31374 1.74586 1.22435 0.99094 0.92236 0.89660 1.88117 1.73882 1.45689 1.22656 1.23860 0.98336 0.97777 0.80956 0.86644 1.23127 0.98698 0.96271 1.01015 1.23616 0.91196 0.92817 0.96016 1.89197 1.37503 1.30379 1.75688 1.24219 0.88513 0.90548 1.02586 1.21603 0.97426 1.00623 0.97947 1.20890 0.91588 0.94098 0.91229 1.43809 1.04095 1.15370 1.68722 1.19440 1.14861 0.93589 1.11360 0.92110 1.25718 1.00801 1.01796 0.95756 1.70233 1.32983 1.34947 1.19648 0.85369 0.78030 0.81350 0.76293 1.20948 1.22503 1.19776 1.20830 0.83841 0.95760 0.91541 0.90700 0.93333 0.93140 0.92195 0.93516 0.91839 0.92434 0.89595 0.75042 0.86525 0.87676 0.91240 0.86466 0.88852 0.89618 0.88446 0.89634 0.93402 0.92836 0.93319 0.94980 0.94273 0.93931 0.99226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.15 71.98 0.59 -3.13 16 2 C -0.08 -2.90 0.75 -52.55 -0.04 -2.94 16 3 C -0.15 -4.90 6.75 71.98 0.49 -4.42 16 4 C -0.09 -2.77 4.39 29.76 0.13 -2.64 16 5 C 0.15 4.67 1.79 43.01 0.08 4.75 16 6 H 0.09 2.98 3.95 -2.38 -0.01 2.97 16 7 N -0.71 -17.06 4.88 -452.05 -2.21 -19.26 16 8 C 0.50 13.52 7.75 87.66 0.68 14.20 16 9 O -0.58 -22.01 16.00 16.01 0.26 -21.76 16 10 C 0.04 0.75 6.27 71.24 0.45 1.20 16 11 O -0.38 -8.73 9.51 -129.94 -1.24 -9.96 16 12 C 0.05 0.67 3.59 31.61 0.11 0.79 16 13 H 0.12 0.72 7.84 -2.39 -0.02 0.70 16 14 C -0.15 -1.97 6.90 31.61 0.22 -1.76 16 15 C 0.04 0.54 7.63 72.49 0.55 1.09 16 16 O -0.41 -8.78 11.66 -148.98 -1.74 -10.52 16 17 C 0.02 0.27 7.40 72.49 0.54 0.81 16 18 C -0.13 -4.95 5.20 29.39 0.15 -4.80 16 19 C 0.15 6.48 5.58 87.38 0.49 6.97 16 20 N -0.60 -29.37 2.27 -698.35 -1.58 -30.95 16 21 C -0.26 -14.18 9.43 84.03 0.79 -13.38 16 22 H 0.06 3.27 7.88 -2.91 -0.02 3.24 16 23 C -0.05 -2.49 4.84 84.86 0.41 -2.08 16 24 N -0.93 -54.57 11.11 21.65 0.24 -54.32 16 25 Si 0.96 44.54 29.58 68.60 2.03 46.57 16 26 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 28 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 29 C 0.21 9.61 3.56 86.49 0.31 9.91 16 30 H 0.07 1.76 8.09 -2.39 -0.02 1.74 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.51 8.13 -2.38 -0.02 1.49 16 33 H 0.06 2.19 3.15 -2.39 -0.01 2.18 16 34 H 0.05 1.55 8.13 -2.38 -0.02 1.53 16 35 H 0.06 1.84 7.89 -2.39 -0.02 1.82 16 36 H 0.06 2.06 7.48 -2.39 -0.02 2.05 16 37 H 0.09 2.09 7.64 -2.39 -0.02 2.07 16 38 H 0.41 6.82 8.61 -92.71 -0.80 6.02 16 39 H 0.12 1.06 8.11 -2.39 -0.02 1.04 16 40 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.24 8.00 -2.39 -0.02 1.22 16 42 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 47 H 0.05 1.79 7.95 -2.39 -0.02 1.78 16 48 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.05 2.07 5.21 -2.39 -0.01 2.06 16 50 H 0.03 1.45 7.99 -2.39 -0.02 1.43 16 51 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 52 H 0.04 2.24 6.23 -2.39 -0.01 2.22 16 53 H -0.01 -0.55 7.86 -2.39 -0.02 -0.57 16 Total: -1.00 -76.46 399.84 1.80 -74.66 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.10 Total: 20.98 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.94 Total: 4.57 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -3.55 Total: -104.54 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -2.72 Total: -42.24 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.46 1.80 -74.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489342112.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.541 kcal (2) G-P(sol) polarization free energy of solvation -76.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds