Wall clock time and date at job start Sat Apr 11 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99542 * 2 1 4 4 H 1.48507 * 109.46842 * 179.72271 * 3 2 1 5 5 H 1.48494 * 109.47516 * 299.72621 * 3 2 1 6 6 H 1.48506 * 109.47255 * 59.72958 * 3 2 1 7 7 C 1.38808 * 119.99881 * 179.72703 * 2 1 3 8 8 H 1.08003 * 119.99613 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00418 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00306 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47387 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47505 * 63.22427 * 11 10 9 13 13 N 1.46505 * 109.47048 * 303.23014 * 11 10 9 14 14 C 1.34775 * 120.00151 * 158.41050 * 13 11 10 15 15 O 1.21277 * 120.00031 * 355.29367 * 14 13 11 16 16 C 1.50696 * 119.99935 * 175.29692 * 14 13 11 17 17 O 1.42903 * 109.47112 * 179.97438 * 16 14 13 18 18 C 1.42901 * 113.99992 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47014 * 180.02562 * 18 17 16 20 20 H 1.09001 * 110.33555 * 305.70272 * 19 18 17 21 21 C 1.54482 * 110.37135 * 183.45180 * 19 18 17 22 22 C 1.54514 * 104.06263 * 217.18963 * 21 19 18 23 23 C 1.54476 * 104.06067 * 0.02562 * 22 21 19 24 24 O 1.44427 * 110.37010 * 67.95461 * 19 18 17 25 25 C 1.52999 * 109.47239 * 183.22719 * 11 10 9 26 26 C 1.54267 * 110.02916 * 59.06600 * 25 11 10 27 27 C 1.54897 * 104.19246 * 217.10519 * 26 25 11 28 28 C 1.54893 * 102.74731 * 37.94075 * 27 26 25 29 29 C 1.53869 * 110.03207 * 301.89810 * 25 11 10 30 30 H 0.97000 * 120.00735 * 0.27362 * 1 2 3 31 31 H 0.97003 * 120.00346 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47131 * 300.00442 * 10 9 7 33 33 H 1.08997 * 109.46577 * 60.00352 * 10 9 7 34 34 H 0.96999 * 119.99958 * 338.40718 * 13 11 10 35 35 H 1.09003 * 109.47500 * 299.99655 * 16 14 13 36 36 H 1.09000 * 109.47260 * 59.99850 * 16 14 13 37 37 H 1.08997 * 109.47473 * 300.00668 * 18 17 16 38 38 H 1.09003 * 109.47026 * 60.00873 * 18 17 16 39 39 H 1.08996 * 110.51315 * 335.83832 * 21 19 18 40 40 H 1.09000 * 110.50668 * 98.54714 * 21 19 18 41 41 H 1.09001 * 110.50477 * 118.64685 * 22 21 19 42 42 H 1.08998 * 110.51185 * 241.35552 * 22 21 19 43 43 H 1.09002 * 110.37053 * 142.81049 * 23 22 21 44 44 H 1.09002 * 110.37294 * 265.03113 * 23 22 21 45 45 H 1.09003 * 110.01225 * 180.49966 * 25 11 10 46 46 H 1.08999 * 110.48557 * 335.77931 * 26 25 11 47 47 H 1.09001 * 110.49091 * 98.42714 * 26 25 11 48 48 H 1.09004 * 110.75140 * 279.62537 * 27 26 25 49 49 H 1.08997 * 110.75698 * 156.25440 * 27 26 25 50 50 H 1.09000 * 110.48556 * 203.38092 * 28 27 26 51 51 H 1.08995 * 110.59790 * 80.79108 * 28 27 26 52 52 H 1.08999 * 110.03062 * 238.57200 * 29 25 11 53 53 H 1.09001 * 110.03490 * 359.94800 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0068 5 1 1.8963 2.3936 -1.2158 6 1 1.8863 2.3994 1.2092 7 6 2.0102 -1.2021 0.0057 8 1 3.0903 -1.2021 0.0053 9 7 1.3256 -2.3880 0.0119 10 6 2.0582 -3.6568 0.0174 11 6 1.0640 -4.8197 0.0230 12 1 0.4756 -4.7993 -0.8943 13 7 0.1718 -4.6938 1.1782 14 6 -1.0261 -5.3114 1.1750 15 8 -1.4021 -5.9003 0.1837 16 6 -1.8983 -5.2702 2.4032 17 8 -3.1068 -5.9909 2.1536 18 6 -4.0092 -6.0140 3.2614 19 6 -5.2607 -6.8087 2.8832 20 1 -5.7016 -6.4092 1.9699 21 6 -6.2884 -6.7742 4.0361 22 6 -6.9158 -8.1862 4.0222 23 6 -6.1924 -8.9069 2.8631 24 8 -4.9372 -8.2063 2.7158 25 6 1.8273 -6.1428 0.1100 26 6 2.6832 -6.1758 1.3931 27 6 3.9800 -6.9072 0.9659 28 6 4.2186 -6.3708 -0.4675 29 6 2.8036 -6.2668 -1.0729 30 1 -0.4851 0.8400 -0.0040 31 1 0.3556 -2.3881 0.0119 32 1 2.6842 -3.7187 -0.8727 33 1 2.6854 -3.7102 0.9072 34 1 0.4432 -4.1659 1.9454 35 1 -1.3693 -5.7262 3.2401 36 1 -2.1368 -4.2345 2.6450 37 1 -3.5239 -6.4858 4.1157 38 1 -4.2912 -4.9937 3.5215 39 1 -5.7896 -6.5872 4.9870 40 1 -7.0489 -6.0165 3.8472 41 1 -6.7270 -8.6972 4.9663 42 1 -7.9864 -8.1265 3.8265 43 1 -6.0170 -9.9523 3.1169 44 1 -6.7774 -8.8328 1.9463 45 1 1.1273 -6.9783 0.1057 46 1 2.9088 -5.1631 1.7272 47 1 2.1721 -6.7327 2.1784 48 1 3.8287 -7.9866 0.9543 49 1 4.8085 -6.6392 1.6215 50 1 4.8280 -7.0701 -1.0400 51 1 4.6930 -5.3901 -0.4359 52 1 2.5779 -7.1630 -1.6509 53 1 2.7329 -5.3848 -1.7094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500130352.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:37 Heat of formation + Delta-G solvation = -151.967011 kcal Electronic energy + Delta-G solvation = -30439.299455 eV Core-core repulsion = 26309.747412 eV Total energy + Delta-G solvation = -4129.552043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.24163 -40.46263 -39.50205 -38.19895 -36.72726 -35.21526 -33.16238 -33.05507 -31.91848 -31.13517 -29.57187 -28.70390 -27.73053 -26.08079 -24.99730 -23.34704 -22.93055 -22.12440 -21.77893 -21.24734 -20.06009 -19.16684 -18.38982 -18.04510 -17.61281 -17.19772 -16.96043 -16.73659 -16.46705 -16.35530 -16.21646 -15.94966 -15.23786 -15.21498 -15.00583 -14.97034 -14.61123 -14.35043 -14.07132 -13.84669 -13.52811 -13.15460 -13.07403 -12.80049 -12.72791 -12.65056 -12.62002 -12.25407 -12.19013 -12.15071 -12.06455 -11.90883 -11.87629 -11.85394 -11.77195 -11.49356 -11.38727 -11.19785 -10.91246 -10.78308 -10.76958 -10.73033 -9.97478 -8.98215 -7.93122 -5.22597 1.48646 1.49778 1.59341 1.61212 1.83782 2.56627 2.88758 2.95930 3.41174 3.61520 3.64404 3.68840 3.74506 3.87401 3.90441 3.98610 4.06469 4.14762 4.17125 4.20160 4.24725 4.30247 4.35635 4.42504 4.49108 4.53242 4.57034 4.62525 4.69584 4.75730 4.80383 4.86574 4.87483 4.87730 4.93730 4.94499 5.07815 5.12071 5.14566 5.16679 5.17482 5.30227 5.35833 5.48969 5.52025 5.55945 5.63063 5.87471 6.06840 6.27422 6.59513 7.26662 7.34661 8.07629 8.31885 9.30134 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008888 B = 0.002736 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.493430 B =10233.202762 C =12868.222410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.156 3.844 12 H 0.049 0.951 13 N -0.701 5.701 14 C 0.510 3.490 15 O -0.576 6.576 16 C 0.049 3.951 17 O -0.393 6.393 18 C 0.061 3.939 19 C 0.068 3.932 20 H 0.062 0.938 21 C -0.141 4.141 22 C -0.148 4.148 23 C 0.030 3.970 24 O -0.398 6.398 25 C -0.091 4.091 26 C -0.118 4.118 27 C -0.117 4.117 28 C -0.119 4.119 29 C -0.122 4.122 30 H 0.250 0.750 31 H 0.373 0.627 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.412 0.588 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.063 0.937 52 H 0.066 0.934 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.424 -17.455 12.268 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.227 1.227 6 H -0.220 1.220 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.051 3.949 12 H 0.067 0.933 13 N -0.353 5.353 14 C 0.296 3.704 15 O -0.456 6.456 16 C -0.031 4.031 17 O -0.312 6.312 18 C -0.015 4.015 19 C 0.010 3.990 20 H 0.080 0.920 21 C -0.179 4.179 22 C -0.186 4.186 23 C -0.046 4.046 24 O -0.318 6.318 25 C -0.111 4.111 26 C -0.155 4.155 27 C -0.155 4.155 28 C -0.157 4.157 29 C -0.161 4.161 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.248 0.752 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.095 0.905 51 H 0.082 0.918 52 H 0.085 0.915 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.346 -17.972 11.355 21.920 hybrid contribution -0.334 1.546 -0.042 1.582 sum -5.680 -16.426 11.312 20.737 Atomic orbital electron populations 1.69837 1.06627 1.25859 1.59595 1.25539 0.96297 1.01010 1.03820 0.85097 0.78344 0.79978 0.76449 1.18887 1.22665 1.21980 1.19643 0.91553 0.84999 1.40864 0.90265 1.42565 1.05603 1.01000 1.89436 1.21167 0.93295 0.83535 0.99655 1.21046 0.90196 0.95322 0.88315 0.93292 1.45753 1.16896 1.51614 1.21061 1.20822 0.81818 0.78124 0.89597 1.90674 1.73336 1.45188 1.36363 1.22273 0.86522 0.99075 0.95184 1.88018 1.29133 1.74947 1.39116 1.22879 0.89456 1.00303 0.88904 1.23149 0.94417 0.82520 0.98888 0.91962 1.22927 0.97840 0.98790 0.98332 1.22938 1.01243 0.94887 0.99484 1.23652 0.84759 0.97893 0.98305 1.89235 1.30635 1.18309 1.93612 1.22004 0.96806 0.95193 0.97078 1.22477 0.95813 1.01328 0.95894 1.22467 0.97020 0.99834 0.96167 1.22334 0.95550 1.01412 0.96393 1.22221 0.95174 1.01716 0.96945 0.94161 0.79532 0.94550 0.93388 0.75205 0.87125 0.88371 0.91030 0.89442 0.89115 0.88530 0.89504 0.88671 0.88144 0.92264 0.92404 0.90947 0.91564 0.91092 0.90403 0.90487 0.91796 0.91510 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.62 13.06 21.65 0.28 -58.33 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.97 45.33 29.55 68.60 2.03 47.35 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 7 C -0.24 -12.88 9.99 84.03 0.84 -12.04 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -36.54 5.45 -343.46 -1.87 -38.41 16 10 C 0.15 5.70 5.24 86.38 0.45 6.16 16 11 C 0.16 5.47 1.82 44.99 0.08 5.56 16 12 H 0.05 2.08 7.62 -2.39 -0.02 2.06 16 13 N -0.70 -22.88 4.28 -442.54 -1.89 -24.78 16 14 C 0.51 18.09 7.82 87.66 0.69 18.78 16 15 O -0.58 -26.08 16.19 16.02 0.26 -25.82 16 16 C 0.05 1.31 6.42 71.23 0.46 1.77 16 17 O -0.39 -12.37 9.88 -127.67 -1.26 -13.63 16 18 C 0.06 1.31 5.54 71.98 0.40 1.71 16 19 C 0.07 1.46 3.57 31.10 0.11 1.57 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 C -0.14 -1.82 6.63 31.61 0.21 -1.61 16 22 C -0.15 -1.69 7.09 31.61 0.22 -1.46 16 23 C 0.03 0.52 7.63 72.48 0.55 1.07 16 24 O -0.40 -10.45 11.35 -148.60 -1.69 -12.13 16 25 C -0.09 -2.61 2.91 -10.07 -0.03 -2.64 16 26 C -0.12 -2.77 5.84 31.67 0.18 -2.59 16 27 C -0.12 -2.32 6.91 31.89 0.22 -2.10 16 28 C -0.12 -2.56 6.83 31.67 0.22 -2.34 16 29 C -0.12 -3.21 5.94 31.32 0.19 -3.02 16 30 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.37 20.10 7.40 -92.71 -0.69 19.42 16 32 H 0.04 1.42 6.47 -2.39 -0.02 1.40 16 33 H 0.05 1.70 5.93 -2.39 -0.01 1.69 16 34 H 0.41 12.05 8.58 -92.71 -0.80 11.25 16 35 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.09 0.95 7.87 -2.39 -0.02 0.94 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.75 8.14 -2.39 -0.02 0.74 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 46 H 0.07 1.79 5.65 -2.39 -0.01 1.77 16 47 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 49 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.06 1.70 6.20 -2.39 -0.01 1.68 16 Total: -1.00 -76.39 417.03 0.54 -75.85 By element: Atomic # 1 Polarization: 45.39 SS G_CDS: -0.58 Total: 44.81 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.26 Total: 5.10 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -3.48 Total: -121.52 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -2.69 Total: -51.59 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -76.39 0.54 -75.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500130352.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.119 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds