Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.52052 * 2 1 4 4 C 1.53176 * 109.52513 * 120.12511 * 2 1 3 5 5 C 1.53181 * 109.10860 * 62.88161 * 4 2 1 6 6 C 1.53283 * 109.06224 * 56.94364 * 5 4 2 7 7 H 1.08998 * 109.46033 * 62.44189 * 6 5 4 8 8 C 1.52999 * 109.45484 * 182.45214 * 6 5 4 9 9 C 1.50696 * 109.47006 * 184.98576 * 8 6 5 10 10 O 1.21284 * 120.00201 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99894 * 180.02562 * 9 8 6 12 12 C 1.46507 * 120.00184 * 174.83765 * 11 9 8 13 13 C 1.52997 * 112.94122 * 292.71467 * 12 11 9 14 14 C 1.53004 * 109.46901 * 304.09261 * 13 12 11 15 15 O 1.42899 * 109.47024 * 175.21477 * 14 13 12 16 16 C 1.53945 * 113.74447 * 160.97552 * 12 11 9 17 17 N 1.47587 * 86.11606 * 222.04610 * 16 12 11 18 18 C 1.36934 * 134.49017 * 204.63624 * 17 16 12 19 19 H 1.07998 * 119.99598 * 180.02562 * 18 17 16 20 20 C 1.38807 * 120.00203 * 0.02562 * 18 17 16 21 21 N 1.31622 * 119.99866 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00250 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46864 * 89.99741 * 22 20 18 24 24 H 1.48497 * 109.47263 * 209.99695 * 22 20 18 25 25 H 1.48500 * 109.46870 * 330.00054 * 22 20 18 26 26 C 1.47582 * 91.01253 * 24.64409 * 17 16 12 27 27 O 1.42904 * 109.45787 * 302.44142 * 6 5 4 28 28 C 1.42904 * 114.09756 * 61.16414 * 27 6 5 29 29 H 1.08998 * 109.46980 * 299.87079 * 1 2 3 30 30 H 1.08996 * 109.47440 * 59.87348 * 1 2 3 31 31 H 1.08996 * 109.47041 * 179.87515 * 1 2 3 32 32 H 1.09002 * 109.47111 * 180.12804 * 3 2 1 33 33 H 1.09003 * 109.47199 * 300.12102 * 3 2 1 34 34 H 1.09000 * 109.47296 * 60.12889 * 3 2 1 35 35 H 1.08998 * 109.54736 * 182.79462 * 4 2 1 36 36 H 1.09000 * 109.54439 * 302.96936 * 4 2 1 37 37 H 1.09005 * 109.51970 * 176.93186 * 5 4 2 38 38 H 1.08995 * 109.52041 * 297.12032 * 5 4 2 39 39 H 1.09006 * 109.46867 * 304.98292 * 8 6 5 40 40 H 1.08995 * 109.47501 * 64.97845 * 8 6 5 41 41 H 0.97003 * 120.00769 * 354.83080 * 11 9 8 42 42 H 1.08995 * 109.47575 * 64.09482 * 13 12 11 43 43 H 1.09004 * 109.46922 * 184.09482 * 13 12 11 44 44 H 1.09000 * 109.47077 * 295.20732 * 14 13 12 45 45 H 1.08994 * 109.47442 * 55.21395 * 14 13 12 46 46 H 0.96700 * 114.00039 * 180.02562 * 15 14 13 47 47 H 1.08992 * 113.76885 * 336.35183 * 16 12 11 48 48 H 1.08997 * 113.76286 * 107.74677 * 16 12 11 49 49 H 0.97006 * 119.99679 * 180.02562 * 21 20 18 50 50 H 1.09006 * 113.76484 * 221.05892 * 26 17 16 51 51 H 1.08997 * 113.87157 * 89.67383 * 26 17 16 52 52 H 1.08999 * 109.48102 * 178.85580 * 28 27 6 53 53 H 1.08998 * 109.49216 * 58.82343 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0412 1.4421 0.0000 4 6 2.0419 -0.7246 1.2487 5 6 1.5877 -2.1867 1.2016 6 6 2.0971 -2.8277 -0.0942 7 1 3.1871 -2.8196 -0.0992 8 6 1.5969 -4.2711 -0.1796 9 6 2.1965 -4.9397 -1.3898 10 8 2.9493 -4.3224 -2.1130 11 7 1.8952 -6.2233 -1.6690 12 6 2.3864 -6.8391 -2.9043 13 6 1.7574 -6.2363 -4.1621 14 6 0.2336 -6.3387 -4.0694 15 8 -0.3573 -5.6773 -5.1899 16 6 2.3723 -8.3782 -2.8779 17 7 3.6941 -8.3015 -3.5300 18 6 4.4195 -9.1429 -4.3306 19 1 5.3932 -8.8421 -4.6880 20 6 3.9033 -10.3824 -4.6827 21 7 2.7168 -10.7491 -4.2467 22 14 4.8925 -11.5299 -5.7755 23 1 5.7471 -12.4028 -4.9312 24 1 3.9670 -12.3697 -6.5776 25 1 5.7497 -10.7294 -6.6862 26 6 3.9200 -6.9539 -2.9724 27 8 1.6098 -2.0874 -1.2151 28 6 2.0416 -0.7255 -1.2473 29 1 -0.3633 0.5118 0.8911 30 1 -0.3634 0.5158 -0.8888 31 1 -0.3633 -1.0276 -0.0022 32 1 3.1312 1.4411 -0.0023 33 1 1.6765 1.9569 -0.8889 34 1 1.6802 1.9556 0.8911 35 1 3.1307 -0.6817 1.2745 36 1 1.6369 -0.2454 2.1400 37 1 1.9941 -2.7222 2.0597 38 1 0.4989 -2.2308 1.2258 39 1 1.8937 -4.8123 0.7189 40 1 0.5102 -4.2747 -0.2635 41 1 1.3533 -6.7397 -1.0520 42 1 2.0466 -5.1889 -4.2468 43 1 2.1055 -6.7815 -5.0394 44 1 -0.0608 -7.3882 -4.0705 45 1 -0.1070 -5.8668 -3.1479 46 1 -1.3239 -5.7021 -5.1965 47 1 2.4016 -8.8006 -1.8736 48 1 1.5983 -8.8212 -3.5046 49 1 2.3562 -11.6155 -4.4925 50 1 4.3818 -6.2597 -3.6746 51 1 4.4042 -6.9560 -1.9959 52 1 1.6453 -0.2395 -2.1388 53 1 3.1308 -0.6897 -1.2674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506107439.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -119.714030 kcal Electronic energy + Delta-G solvation = -31572.513846 eV Core-core repulsion = 27444.360398 eV Total energy + Delta-G solvation = -4128.153449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.52669 -40.78007 -39.19242 -37.70312 -36.20591 -35.19722 -34.16612 -33.64450 -31.95054 -30.42888 -28.96283 -28.14531 -26.94017 -26.84079 -25.61070 -24.67908 -23.32318 -22.62980 -21.31406 -20.08640 -19.76836 -18.77814 -18.44590 -17.89617 -17.40541 -17.13212 -16.66732 -16.56029 -16.10108 -15.90230 -15.88826 -15.57250 -15.37650 -15.08278 -14.97120 -14.51995 -14.39563 -14.09756 -13.62189 -13.48218 -13.31339 -13.28671 -13.01920 -12.97251 -12.84899 -12.81327 -12.73550 -12.66686 -12.56051 -12.40819 -12.23882 -12.05007 -11.89263 -11.72500 -11.72172 -11.36325 -11.31676 -11.07033 -10.96657 -10.85882 -10.53992 -10.14536 -9.95980 -8.96491 -7.93913 -5.26969 1.44963 1.46716 1.55418 1.86196 2.21870 2.50279 2.93112 3.16368 3.26228 3.39217 3.63124 3.71499 3.82007 3.83773 3.88133 4.09028 4.13520 4.21033 4.26339 4.33461 4.40055 4.45209 4.49984 4.60399 4.67492 4.70743 4.71956 4.73271 4.78599 4.83913 4.86061 4.87941 4.93297 4.98906 5.05036 5.07125 5.10314 5.13194 5.16836 5.19844 5.24035 5.27941 5.33928 5.42993 5.47178 5.58063 5.77785 5.89896 6.43464 6.77134 6.90198 6.91958 7.49829 7.55786 8.49857 9.22908 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.002484 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.941496 B =11270.542048 C =11733.565261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.111 4.111 5 C -0.144 4.144 6 C 0.102 3.898 7 H 0.041 0.959 8 C -0.126 4.126 9 C 0.509 3.491 10 O -0.568 6.568 11 N -0.710 5.710 12 C 0.157 3.843 13 C -0.087 4.087 14 C 0.094 3.906 15 O -0.593 6.593 16 C 0.173 3.827 17 N -0.633 5.633 18 C -0.238 4.238 19 H 0.077 0.923 20 C -0.058 4.058 21 N -0.947 5.947 22 Si 0.978 3.022 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.274 1.274 26 C 0.129 3.871 27 O -0.387 6.387 28 C 0.070 3.930 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.138 0.862 40 H 0.120 0.880 41 H 0.414 0.586 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.396 0.604 47 H 0.035 0.965 48 H 0.058 0.942 49 H 0.252 0.748 50 H 0.033 0.967 51 H 0.040 0.960 52 H 0.085 0.915 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 20.345 15.520 27.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 C -0.195 4.195 4 C -0.148 4.148 5 C -0.181 4.181 6 C 0.044 3.956 7 H 0.059 0.941 8 C -0.166 4.166 9 C 0.297 3.703 10 O -0.446 6.446 11 N -0.364 5.364 12 C 0.069 3.931 13 C -0.126 4.126 14 C 0.016 3.984 15 O -0.402 6.402 16 C 0.048 3.952 17 N -0.360 5.360 18 C -0.366 4.366 19 H 0.095 0.905 20 C -0.252 4.252 21 N -0.595 5.595 22 Si 0.806 3.194 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.199 1.199 26 C 0.002 3.998 27 O -0.306 6.306 28 C -0.007 4.007 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.156 0.844 40 H 0.138 0.862 41 H 0.252 0.748 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.246 0.754 47 H 0.053 0.947 48 H 0.076 0.924 49 H 0.061 0.939 50 H 0.052 0.948 51 H 0.058 0.942 52 H 0.103 0.897 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.494 20.541 14.528 26.555 hybrid contribution 0.308 -1.176 -0.354 1.266 sum -8.186 19.365 14.174 25.356 Atomic orbital electron populations 1.21772 0.93412 1.02023 1.01775 1.21192 0.97124 0.96169 0.95431 1.21779 1.00890 0.94246 1.02604 1.21665 1.00540 0.95005 0.97590 1.22265 1.02701 0.96311 0.96855 1.21882 0.96963 0.90108 0.86617 0.94078 1.21832 1.03754 0.94200 0.96790 1.21267 0.80562 0.81129 0.87391 1.90701 1.37082 1.64600 1.52178 1.45980 1.55268 1.12746 1.22421 1.22089 0.93184 0.93181 0.84606 1.21152 0.95070 1.00129 0.96215 1.21943 0.92075 0.95842 0.88515 1.86439 1.26500 1.79472 1.47753 1.22413 0.88453 0.89015 0.95355 1.45990 1.18909 1.16049 1.55038 1.19298 0.99486 0.96309 1.21514 0.90515 1.25553 0.98402 0.98843 1.02412 1.69941 1.18145 1.21528 1.49870 0.85090 0.77495 0.78552 0.78247 1.21063 1.21576 1.19908 1.22818 0.94887 0.86085 0.95975 1.87951 1.73544 1.22702 1.46371 1.22634 0.97723 0.82002 0.98309 0.91600 0.93156 0.92576 0.92795 0.92388 0.91185 0.92338 0.89843 0.88986 0.89852 0.84378 0.86154 0.74840 0.92525 0.93297 0.93475 0.91843 0.75401 0.94708 0.92376 0.93932 0.94828 0.94242 0.89656 0.94592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.07 71.98 0.58 -1.26 16 2 C -0.10 -1.48 0.77 -52.09 -0.04 -1.52 16 3 C -0.14 -1.69 8.49 71.98 0.61 -1.08 16 4 C -0.11 -1.45 4.80 30.71 0.15 -1.30 16 5 C -0.14 -1.90 5.07 30.75 0.16 -1.74 16 6 C 0.10 2.11 2.19 30.69 0.07 2.18 16 7 H 0.04 1.03 7.96 -2.39 -0.02 1.01 16 8 C -0.13 -2.29 5.41 29.85 0.16 -2.13 16 9 C 0.51 14.76 7.38 87.66 0.65 15.41 16 10 O -0.57 -22.07 13.88 10.74 0.15 -21.92 16 11 N -0.71 -20.35 4.46 -427.55 -1.91 -22.26 16 12 C 0.16 6.12 0.67 5.36 0.00 6.13 16 13 C -0.09 -3.54 4.86 30.59 0.15 -3.39 16 14 C 0.09 3.07 6.86 71.98 0.49 3.56 16 15 O -0.59 -18.99 13.66 -148.98 -2.03 -21.02 16 16 C 0.17 7.96 6.72 86.48 0.58 8.55 16 17 N -0.63 -33.70 3.54 -716.14 -2.54 -36.23 16 18 C -0.24 -13.82 10.70 84.03 0.90 -12.92 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 21 N -0.95 -55.98 11.38 21.65 0.25 -55.74 16 22 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 26 C 0.13 5.91 7.38 86.48 0.64 6.55 16 27 O -0.39 -10.03 9.06 -135.20 -1.22 -11.25 16 28 C 0.07 1.51 5.54 72.01 0.40 1.91 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.88 6.14 -2.39 -0.01 0.86 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.08 0.99 6.63 -2.39 -0.02 0.98 16 39 H 0.14 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.41 8.82 8.72 -92.71 -0.81 8.01 16 42 H 0.06 2.48 7.27 -2.39 -0.02 2.46 16 43 H 0.05 2.35 8.02 -2.38 -0.02 2.33 16 44 H 0.05 1.56 7.62 -2.39 -0.02 1.54 16 45 H 0.06 1.75 7.53 -2.39 -0.02 1.73 16 46 H 0.40 7.97 9.12 -74.06 -0.68 7.29 16 47 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.06 2.94 6.60 -2.39 -0.02 2.93 16 49 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 50 H 0.03 1.64 8.10 -2.38 -0.02 1.62 16 51 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 53 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -77.52 411.13 0.09 -77.42 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -0.59 Total: 26.55 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 5.96 Total: 16.05 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -4.20 Total: -114.23 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -3.11 Total: -54.19 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -77.52 0.09 -77.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506107439.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.291 kcal (2) G-P(sol) polarization free energy of solvation -77.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds