Wall clock time and date at job start Sat Apr 11 2020 06:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99709 * 2 1 4 4 H 1.48501 * 109.46740 * 239.99612 * 3 2 1 5 5 H 1.48497 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47440 * 119.99632 * 3 2 1 7 7 C 1.38812 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99561 * 165.41657 * 7 2 1 9 9 N 1.36942 * 119.99938 * 345.42598 * 7 2 1 10 10 C 1.46923 * 120.62986 * 328.31704 * 9 7 2 11 11 C 1.53184 * 108.77507 * 233.59066 * 10 9 7 12 12 C 1.53039 * 109.31456 * 305.36562 * 11 10 9 13 13 C 1.53034 * 109.53801 * 61.36509 * 12 11 10 14 14 C 1.46919 * 120.62608 * 148.29893 * 9 7 2 15 15 H 1.09001 * 109.58785 * 246.19327 * 14 9 7 16 16 C 1.52997 * 109.59518 * 6.62167 * 14 9 7 17 17 N 1.46503 * 109.47013 * 299.18889 * 16 14 9 18 18 C 1.34776 * 119.99533 * 179.97438 * 17 16 14 19 19 O 1.21282 * 120.00292 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.99616 * 179.97438 * 18 17 16 21 21 C 1.52996 * 109.47249 * 180.02562 * 20 18 17 22 22 O 1.42899 * 109.47316 * 180.02562 * 21 20 18 23 23 C 1.42900 * 114.00226 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47308 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.87103 * 53.99197 * 24 23 22 26 26 C 1.54096 * 109.87859 * 174.99784 * 24 23 22 27 27 C 1.54810 * 104.18943 * 121.45127 * 26 24 23 28 28 C 1.54996 * 102.09094 * 20.88156 * 27 26 24 29 29 O 1.43740 * 109.87877 * 292.82843 * 24 23 22 30 30 H 0.97001 * 120.00771 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.58692 * 353.37965 * 10 9 7 32 32 H 1.09002 * 109.58473 * 113.65410 * 10 9 7 33 33 H 1.09007 * 109.49561 * 185.41576 * 11 10 9 34 34 H 1.08993 * 109.50120 * 65.31850 * 11 10 9 35 35 H 1.09003 * 109.45748 * 301.34643 * 12 11 10 36 36 H 1.09004 * 109.46516 * 181.38950 * 12 11 10 37 37 H 1.09002 * 109.49789 * 58.58753 * 13 12 11 38 38 H 1.09005 * 109.50094 * 178.68431 * 13 12 11 39 39 H 1.09005 * 109.46863 * 59.18297 * 16 14 9 40 40 H 1.08995 * 109.47542 * 179.18252 * 16 14 9 41 41 H 0.97001 * 119.99853 * 359.97438 * 17 16 14 42 42 H 1.09000 * 109.47673 * 300.00875 * 20 18 17 43 43 H 1.09005 * 109.46863 * 60.00499 * 20 18 17 44 44 H 1.09005 * 109.47081 * 300.00369 * 21 20 18 45 45 H 1.08995 * 109.47171 * 60.00230 * 21 20 18 46 46 H 1.09002 * 109.46550 * 299.99533 * 23 22 21 47 47 H 1.08996 * 109.47452 * 59.99206 * 23 22 21 48 48 H 1.09005 * 110.48772 * 240.13057 * 26 24 23 49 49 H 1.09000 * 110.48939 * 2.64144 * 26 24 23 50 50 H 1.09004 * 110.90643 * 139.07721 * 27 26 24 51 51 H 1.08999 * 110.90873 * 262.64611 * 27 26 24 52 52 H 1.09004 * 110.62102 * 81.47631 * 28 27 26 53 53 H 1.08999 * 110.62035 * 204.31729 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1038 1.6963 -1.2125 5 1 1.2850 2.7464 -0.0006 6 1 3.1037 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0642 -1.2171 -0.2350 9 7 1.3587 -2.3689 0.2995 10 6 0.2304 -2.3762 1.2406 11 6 0.5060 -3.4146 2.3326 12 6 0.7905 -4.7702 1.6818 13 6 2.0325 -4.6613 0.7944 14 6 1.7743 -3.6369 -0.3151 15 1 0.9842 -4.0011 -0.9718 16 6 3.0562 -3.4203 -1.1217 17 7 2.8057 -2.4423 -2.1834 18 6 3.7986 -2.0923 -3.0250 19 8 4.8991 -2.5872 -2.9037 20 6 3.5408 -1.0867 -4.1174 21 6 4.8227 -0.8699 -4.9239 22 8 4.5784 0.0841 -5.9594 23 6 5.7180 0.3597 -6.7764 24 6 5.3424 1.3878 -7.8454 25 1 4.9088 2.2702 -7.3748 26 6 6.5936 1.7858 -8.6522 27 6 6.2341 1.4229 -10.1136 28 6 4.6854 1.3805 -10.0660 29 8 4.4037 0.8119 -8.7692 30 1 -0.4851 0.8400 -0.0004 31 1 0.1251 -1.3899 1.6925 32 1 -0.6861 -2.6349 0.7103 33 1 -0.3649 -3.4988 2.9827 34 1 1.3703 -3.1044 2.9198 35 1 -0.0644 -5.0682 1.0749 36 1 0.9627 -5.5165 2.4574 37 1 2.8825 -4.3393 1.3960 38 1 2.2483 -5.6328 0.3496 39 1 3.8413 -3.0486 -0.4632 40 1 3.3708 -4.3651 -1.5649 41 1 1.9254 -2.0467 -2.2805 42 1 2.7560 -1.4587 -4.7760 43 1 3.2256 -0.1418 -3.6745 44 1 5.6077 -0.4979 -4.2655 45 1 5.1374 -1.8148 -5.3668 46 1 6.5219 0.7567 -6.1565 47 1 6.0507 -0.5597 -7.2581 48 1 6.7827 2.8553 -8.5601 49 1 7.4604 1.2159 -8.3177 50 1 6.5811 2.1933 -10.8023 51 1 6.6423 0.4492 -10.3843 52 1 4.2713 2.3860 -10.1423 53 1 4.2942 0.7444 -10.8599 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566923738.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:29 Heat of formation + Delta-G solvation = -139.089806 kcal Electronic energy + Delta-G solvation = -30454.608252 eV Core-core repulsion = 26325.614606 eV Total energy + Delta-G solvation = -4128.993645 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.88375 -40.49636 -39.37795 -38.54096 -35.69181 -34.87857 -33.43183 -33.01688 -32.20785 -31.67477 -30.96781 -27.74428 -26.72856 -26.07409 -24.30820 -23.76427 -23.01006 -22.23764 -21.93696 -21.18519 -20.62505 -18.71893 -18.13449 -17.70846 -17.35197 -17.28384 -17.04094 -16.61376 -16.49524 -16.37826 -15.94783 -15.64919 -15.31816 -14.94949 -14.82724 -14.60653 -14.53313 -14.39669 -14.08394 -13.93366 -13.60190 -13.34131 -13.22397 -12.82450 -12.78915 -12.67016 -12.56382 -12.44145 -12.32749 -12.31781 -12.19365 -12.04455 -12.02733 -11.79207 -11.58032 -11.52472 -11.16715 -11.08084 -10.78396 -10.67182 -10.66567 -10.50265 -9.82991 -8.53739 -7.82029 -5.28923 1.42972 1.47366 1.51093 1.69683 2.12203 2.50382 2.84070 2.94021 3.33474 3.59823 3.60489 3.80564 3.84513 3.94176 4.01104 4.01753 4.09821 4.18417 4.22903 4.27751 4.31503 4.40110 4.44743 4.45617 4.48880 4.57727 4.60064 4.66609 4.76270 4.79652 4.80890 4.81776 4.88454 4.89851 4.95292 5.01073 5.05717 5.15258 5.17487 5.22900 5.29188 5.39232 5.47517 5.63448 5.64262 5.76728 5.84461 5.93821 6.17497 6.45742 6.70909 7.20892 7.32453 7.90092 8.44038 9.22330 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.002345 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.571959 B =11935.401278 C =12996.912957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.032 4.032 3 Si 0.936 3.064 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.289 1.289 7 C -0.238 4.238 8 H 0.061 0.939 9 N -0.600 5.600 10 C 0.178 3.822 11 C -0.135 4.135 12 C -0.103 4.103 13 C -0.122 4.122 14 C 0.159 3.841 15 H 0.033 0.967 16 C 0.140 3.860 17 N -0.694 5.694 18 C 0.514 3.486 19 O -0.593 6.593 20 C -0.134 4.134 21 C 0.089 3.911 22 O -0.402 6.402 23 C 0.058 3.942 24 C 0.073 3.927 25 H 0.068 0.932 26 C -0.145 4.145 27 C -0.149 4.149 28 C 0.032 3.968 29 O -0.398 6.398 30 H 0.248 0.752 31 H 0.046 0.954 32 H 0.001 0.999 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.412 0.588 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.103 0.897 51 H 0.079 0.921 52 H 0.067 0.933 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.494 -1.457 -14.625 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.228 4.228 3 Si 0.766 3.234 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.216 1.216 7 C -0.368 4.368 8 H 0.079 0.921 9 N -0.325 5.325 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.016 3.984 17 N -0.343 5.343 18 C 0.301 3.699 19 O -0.476 6.476 20 C -0.174 4.174 21 C 0.013 3.987 22 O -0.322 6.322 23 C -0.018 4.018 24 C 0.015 3.985 25 H 0.086 0.914 26 C -0.183 4.183 27 C -0.186 4.186 28 C -0.044 4.044 29 O -0.318 6.318 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.019 0.981 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.249 0.751 42 H 0.132 0.868 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.078 0.922 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.121 0.879 51 H 0.098 0.902 52 H 0.085 0.915 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.794 -1.739 -14.510 17.592 hybrid contribution 0.000 1.516 0.326 1.550 sum 9.794 -0.223 -14.184 17.238 Atomic orbital electron populations 1.70103 1.06036 1.25461 1.55376 1.25507 0.95593 1.00068 1.01658 0.85825 0.77971 0.81525 0.78047 1.20334 1.22175 1.21580 1.19155 0.91704 0.84958 1.40986 0.92121 1.44237 1.37059 1.02775 1.48411 1.20556 0.88168 0.96850 0.89130 1.22046 1.00454 0.96651 0.98268 1.21346 0.97510 0.96423 0.98746 1.21897 0.98269 0.98664 0.97311 1.20901 0.93284 0.87589 0.92961 0.94982 1.21254 0.97460 0.91274 0.88429 1.46025 1.14467 1.43445 1.30344 1.20565 0.84054 0.82365 0.82898 1.90612 1.24657 1.57549 1.74806 1.21394 1.00289 0.99492 0.96238 1.21973 0.95985 0.92093 0.88697 1.87851 1.36664 1.62341 1.45372 1.22933 0.88356 0.98845 0.91706 1.22876 0.90589 0.94932 0.90102 0.91449 1.22953 0.96865 1.03630 0.94825 1.23138 0.95232 1.03714 0.96537 1.23809 0.95885 0.99353 0.85315 1.88969 1.56424 1.67009 1.19437 0.94274 0.93542 0.98063 0.91760 0.93610 0.92433 0.90726 0.92808 0.89960 0.93650 0.90817 0.75101 0.86820 0.88644 0.93161 0.92398 0.90467 0.92249 0.88586 0.89114 0.87871 0.90211 0.91496 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.30 11.32 21.65 0.25 -51.05 16 2 C -0.03 -1.66 4.95 84.86 0.42 -1.24 16 3 Si 0.94 44.00 29.58 68.60 2.03 46.03 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.24 -11.91 6.98 84.03 0.59 -11.33 16 8 H 0.06 3.13 5.90 -2.91 -0.02 3.12 16 9 N -0.60 -27.30 2.97 -675.25 -2.00 -29.31 16 10 C 0.18 8.08 5.26 86.36 0.45 8.53 16 11 C -0.14 -4.80 6.08 30.67 0.19 -4.61 16 12 C -0.10 -3.04 5.88 30.62 0.18 -2.86 16 13 C -0.12 -3.77 5.37 30.67 0.16 -3.60 16 14 C 0.16 5.92 3.00 44.98 0.14 6.06 16 15 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 16 C 0.14 5.18 4.43 86.38 0.38 5.56 16 17 N -0.69 -26.47 3.88 -463.06 -1.80 -28.26 16 18 C 0.51 19.34 7.83 87.66 0.69 20.02 16 19 O -0.59 -25.00 15.98 -3.04 -0.05 -25.05 16 20 C -0.13 -4.37 6.07 29.85 0.18 -4.19 16 21 C 0.09 2.74 5.23 71.98 0.38 3.12 16 22 O -0.40 -12.30 10.34 -147.43 -1.52 -13.82 16 23 C 0.06 1.34 5.39 71.98 0.39 1.73 16 24 C 0.07 1.52 3.71 30.96 0.11 1.64 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 C -0.15 -1.85 6.64 31.58 0.21 -1.64 16 27 C -0.15 -1.64 7.15 31.89 0.23 -1.41 16 28 C 0.03 0.51 7.72 72.67 0.56 1.07 16 29 O -0.40 -9.94 11.18 -147.43 -1.65 -11.59 16 30 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 31 H 0.05 2.42 6.27 -2.39 -0.01 2.40 16 32 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.05 1.87 7.38 -2.38 -0.02 1.85 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.41 16.55 7.44 -92.71 -0.69 15.86 16 42 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 44 H 0.05 1.57 8.10 -2.38 -0.02 1.55 16 45 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 46 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.09 0.98 7.70 -2.39 -0.02 0.96 16 50 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 53 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -64.90 412.14 0.69 -64.21 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.18 Total: 32.00 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 5.25 Total: 16.84 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -3.56 Total: -108.62 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -3.22 Total: -50.46 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -64.90 0.69 -64.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566923738.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.878 kcal (2) G-P(sol) polarization free energy of solvation -64.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds