Wall clock time and date at job start Sat Apr 11 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00279 * 2 1 4 4 H 1.48501 * 109.47151 * 264.39539 * 3 2 1 5 5 H 1.48502 * 109.46840 * 24.39471 * 3 2 1 6 6 H 1.48496 * 109.47042 * 144.39155 * 3 2 1 7 7 C 1.38815 * 119.99495 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00223 * 8.53430 * 7 2 1 9 9 N 1.36935 * 119.99529 * 188.52918 * 7 2 1 10 10 C 1.46959 * 120.65586 * 49.60143 * 9 7 2 11 11 C 1.53192 * 108.88781 * 126.46011 * 10 9 7 12 12 C 1.53040 * 109.31317 * 54.56194 * 11 10 9 13 13 C 1.53043 * 109.53547 * 298.63155 * 12 11 10 14 14 C 1.46923 * 120.63066 * 229.41715 * 9 7 2 15 15 H 1.09002 * 109.58758 * 113.68074 * 14 9 7 16 16 C 1.52998 * 109.58810 * 353.39735 * 14 9 7 17 17 N 1.46507 * 109.46990 * 60.54188 * 16 14 9 18 18 C 1.34774 * 120.00308 * 180.02562 * 17 16 14 19 19 O 1.21287 * 119.99648 * 359.97438 * 18 17 16 20 20 C 1.50697 * 120.00162 * 180.02562 * 18 17 16 21 21 C 1.53006 * 109.47090 * 179.97438 * 20 18 17 22 22 O 1.42900 * 109.47103 * 179.97438 * 21 20 18 23 23 C 1.42893 * 113.99992 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47315 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.86945 * 53.99072 * 24 23 22 26 26 C 1.54103 * 109.88207 * 175.00237 * 24 23 22 27 27 C 1.54808 * 104.18762 * 121.45168 * 26 24 23 28 28 C 1.54989 * 102.09347 * 20.88146 * 27 26 24 29 29 O 1.43747 * 109.87662 * 292.82810 * 24 23 22 30 30 H 0.97003 * 119.99361 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.59308 * 6.60274 * 10 9 7 32 32 H 1.08996 * 109.58749 * 246.31894 * 10 9 7 33 33 H 1.09000 * 109.50117 * 294.60476 * 11 10 9 34 34 H 1.09005 * 109.50123 * 174.51269 * 11 10 9 35 35 H 1.09004 * 109.46019 * 178.61737 * 12 11 10 36 36 H 1.09000 * 109.45111 * 58.64643 * 12 11 10 37 37 H 1.09001 * 109.49856 * 301.41692 * 13 12 11 38 38 H 1.08997 * 109.52619 * 181.33151 * 13 12 11 39 39 H 1.08997 * 109.47610 * 300.54407 * 16 14 9 40 40 H 1.09000 * 109.47512 * 180.54353 * 16 14 9 41 41 H 0.97003 * 119.99434 * 0.02562 * 17 16 14 42 42 H 1.08997 * 109.46853 * 299.99545 * 20 18 17 43 43 H 1.09002 * 109.47342 * 60.00010 * 20 18 17 44 44 H 1.09002 * 109.46893 * 300.00325 * 21 20 18 45 45 H 1.09002 * 109.46858 * 59.99912 * 21 20 18 46 46 H 1.09004 * 109.47052 * 300.00117 * 23 22 21 47 47 H 1.09007 * 109.47396 * 59.99875 * 23 22 21 48 48 H 1.08999 * 110.48496 * 240.13358 * 26 24 23 49 49 H 1.09001 * 110.48694 * 2.64147 * 26 24 23 50 50 H 1.09004 * 110.90567 * 139.07954 * 27 26 24 51 51 H 1.08999 * 110.90485 * 262.64130 * 27 26 24 52 52 H 1.08998 * 110.61986 * 81.47987 * 28 27 26 53 53 H 1.09001 * 110.61872 * 204.31627 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6163 1.9780 -1.3934 5 1 1.3936 2.6839 0.5783 6 1 3.4836 1.4772 0.8152 7 6 2.0102 -1.2022 0.0005 8 1 1.4792 -2.1323 -0.1378 9 7 3.3682 -1.2087 0.1764 10 6 3.9837 -0.4661 1.2852 11 6 4.8778 -1.4193 2.0846 12 6 5.8814 -2.0839 1.1395 13 6 5.1291 -2.8981 0.0844 14 6 4.2378 -1.9617 -0.7376 15 1 4.8601 -1.2687 -1.3038 16 6 3.3798 -2.7847 -1.7005 17 7 2.5281 -1.8869 -2.4848 18 6 1.6816 -2.3927 -3.4035 19 8 1.6251 -3.5911 -3.5812 20 6 0.8060 -1.4692 -4.2106 21 6 -0.0522 -2.2921 -5.1735 22 8 -0.8829 -1.4164 -5.9384 23 6 -1.7295 -2.0879 -6.8735 24 6 -2.5686 -1.0581 -7.6326 25 1 -1.9175 -0.3079 -8.0813 26 6 -3.3931 -1.7598 -8.7293 27 6 -4.8610 -1.4130 -8.3807 28 6 -4.6953 -0.1520 -7.4950 29 8 -3.4989 -0.4287 -6.7356 30 1 -0.4849 0.8401 0.0004 31 1 3.2047 -0.0656 1.9339 32 1 4.5847 0.3519 0.8881 33 1 4.2624 -2.1842 2.5581 34 1 5.4148 -0.8587 2.8498 35 1 6.5349 -2.7442 1.7098 36 1 6.4797 -1.3169 0.6477 37 1 4.5113 -3.6491 0.5768 38 1 5.8446 -3.3905 -0.5742 39 1 2.7550 -3.4737 -1.1323 40 1 4.0267 -3.3499 -2.3714 41 1 2.5736 -0.9284 -2.3429 42 1 0.1594 -0.9034 -3.5400 43 1 1.4311 -0.7807 -4.7794 44 1 0.5948 -2.8577 -5.8440 45 1 -0.6773 -2.9809 -4.6051 46 1 -1.1176 -2.6492 -7.5796 47 1 -2.3891 -2.7724 -6.3400 48 1 -3.1317 -1.3683 -9.7124 49 1 -3.2350 -2.8377 -8.6946 50 1 -5.4309 -1.1837 -9.2812 51 1 -5.3298 -2.2229 -7.8217 52 1 -4.5611 0.7360 -8.1126 53 1 -5.5533 -0.0319 -6.8336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566923739.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:33 Heat of formation + Delta-G solvation = -134.169398 kcal Electronic energy + Delta-G solvation = -30619.254268 eV Core-core repulsion = 26490.473987 eV Total energy + Delta-G solvation = -4128.780280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.87183 -40.49621 -39.49935 -38.54690 -35.71503 -34.80466 -33.43202 -33.02110 -32.58860 -32.13227 -30.97847 -27.81088 -26.62187 -26.02285 -24.26247 -24.11108 -23.01403 -22.23178 -21.93118 -21.34793 -20.71610 -18.70261 -18.22934 -17.64335 -17.45383 -17.25762 -16.96344 -16.75358 -16.57874 -16.43734 -16.23398 -15.42713 -15.28498 -14.99609 -14.91163 -14.73710 -14.53322 -14.48573 -14.29485 -14.01609 -13.71079 -13.41683 -13.23171 -13.14246 -12.81182 -12.69097 -12.66116 -12.45094 -12.31033 -12.22257 -12.17846 -12.03942 -12.01991 -11.59716 -11.57438 -11.27809 -11.27603 -11.11742 -10.78956 -10.66825 -10.66382 -10.43869 -9.81512 -8.42729 -8.06449 -5.67364 1.43227 1.50920 1.56885 1.70548 2.15575 2.52282 2.84692 2.95184 3.20604 3.33527 3.60578 3.81200 3.84997 3.95176 3.97043 4.00582 4.09710 4.16223 4.19026 4.22733 4.30810 4.39142 4.40145 4.45651 4.48152 4.52968 4.58574 4.59625 4.74135 4.76416 4.79846 4.80056 4.85619 4.89422 4.94671 4.97276 5.06045 5.06370 5.12421 5.18107 5.22994 5.31246 5.36821 5.37999 5.64188 5.69898 5.95561 6.05344 6.18556 6.36409 6.70715 7.07947 7.34135 7.66161 8.17236 9.09526 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.002413 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.518288 B =11599.757839 C =12806.247365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.005 4.005 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.320 1.320 6 H -0.201 1.201 7 C -0.235 4.235 8 H 0.025 0.975 9 N -0.614 5.614 10 C 0.131 3.869 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.123 4.123 14 C 0.158 3.842 15 H 0.054 0.946 16 C 0.141 3.859 17 N -0.688 5.688 18 C 0.516 3.484 19 O -0.596 6.596 20 C -0.133 4.133 21 C 0.093 3.907 22 O -0.402 6.402 23 C 0.057 3.943 24 C 0.072 3.928 25 H 0.074 0.926 26 C -0.143 4.143 27 C -0.149 4.149 28 C 0.031 3.969 29 O -0.404 6.404 30 H 0.258 0.742 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.407 0.593 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.038 0.962 46 H 0.086 0.914 47 H 0.049 0.951 48 H 0.101 0.899 49 H 0.090 0.910 50 H 0.106 0.894 51 H 0.075 0.925 52 H 0.071 0.929 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -1.698 -15.091 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.202 4.202 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.249 1.249 6 H -0.124 1.124 7 C -0.365 4.365 8 H 0.043 0.957 9 N -0.341 5.341 10 C 0.007 3.993 11 C -0.172 4.172 12 C -0.141 4.141 13 C -0.163 4.163 14 C 0.053 3.947 15 H 0.072 0.928 16 C 0.017 3.983 17 N -0.336 5.336 18 C 0.303 3.697 19 O -0.479 6.479 20 C -0.172 4.172 21 C 0.016 3.984 22 O -0.322 6.322 23 C -0.020 4.020 24 C 0.015 3.985 25 H 0.092 0.908 26 C -0.180 4.180 27 C -0.187 4.187 28 C -0.045 4.045 29 O -0.324 6.324 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.243 0.757 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.104 0.896 47 H 0.067 0.933 48 H 0.120 0.880 49 H 0.108 0.892 50 H 0.124 0.876 51 H 0.094 0.906 52 H 0.089 0.911 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.389 -2.196 -14.948 15.296 hybrid contribution -0.708 1.001 0.416 1.294 sum 1.681 -1.195 -14.532 14.678 Atomic orbital electron populations 1.69955 1.07988 1.27064 1.54680 1.26292 0.95328 1.01068 0.97510 0.86829 0.81323 0.79420 0.79665 1.20693 1.24860 1.12411 1.18222 0.82131 0.91094 1.45061 0.95698 1.44432 1.02097 1.58656 1.28930 1.21702 0.95111 0.93464 0.89051 1.21986 0.97823 0.99139 0.98257 1.21364 0.96910 0.99230 0.96570 1.21894 0.98318 0.97735 0.98322 1.21044 0.90967 0.92728 0.89990 0.92806 1.21235 0.92108 0.92264 0.92663 1.45879 1.39812 1.11556 1.36391 1.20513 0.80213 0.88566 0.80440 1.90593 1.69872 1.17081 1.70396 1.21362 0.98598 0.98880 0.98397 1.21934 0.92289 0.91248 0.92940 1.87849 1.55536 1.34741 1.54092 1.22966 0.92389 0.94828 0.91780 1.22932 0.91270 0.94462 0.89874 0.90776 1.22951 0.94310 1.02313 0.98456 1.23140 0.96685 0.97750 1.01120 1.23810 0.87611 0.98087 0.94948 1.89008 1.27114 1.80265 1.36024 0.93307 0.94167 0.93924 0.93750 0.90655 0.90631 0.91317 0.93454 0.89641 0.94888 0.90491 0.75678 0.89760 0.86422 0.91409 0.94391 0.89559 0.93267 0.88012 0.89156 0.87575 0.90639 0.91110 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.99 13.97 21.65 0.30 -57.69 16 2 C 0.00 -0.27 5.30 84.86 0.45 0.18 16 3 Si 0.90 40.96 26.63 68.60 1.83 42.79 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.32 -15.63 7.11 99.48 0.71 -14.93 16 6 H -0.20 -7.93 3.87 99.48 0.39 -7.54 16 7 C -0.23 -12.22 6.62 84.03 0.56 -11.67 16 8 H 0.03 1.56 7.10 -2.91 -0.02 1.54 16 9 N -0.61 -25.79 2.41 -675.14 -1.63 -27.42 16 10 C 0.13 4.92 4.02 86.36 0.35 5.27 16 11 C -0.13 -4.00 6.08 30.67 0.19 -3.81 16 12 C -0.10 -2.58 5.88 30.62 0.18 -2.40 16 13 C -0.12 -3.48 5.37 30.67 0.16 -3.31 16 14 C 0.16 5.46 3.00 44.98 0.14 5.60 16 15 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 16 C 0.14 5.36 4.49 86.38 0.39 5.75 16 17 N -0.69 -27.90 4.15 -463.05 -1.92 -29.82 16 18 C 0.52 21.36 7.83 87.66 0.69 22.04 16 19 O -0.60 -27.32 15.98 -3.05 -0.05 -27.37 16 20 C -0.13 -4.86 6.07 29.85 0.18 -4.68 16 21 C 0.09 3.17 5.23 71.98 0.38 3.54 16 22 O -0.40 -13.48 10.34 -147.43 -1.52 -15.00 16 23 C 0.06 1.44 5.39 71.98 0.39 1.83 16 24 C 0.07 1.63 3.71 30.97 0.11 1.75 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 C -0.14 -1.98 6.64 31.58 0.21 -1.77 16 27 C -0.15 -1.98 7.15 31.89 0.23 -1.75 16 28 C 0.03 0.59 7.72 72.66 0.56 1.15 16 29 O -0.40 -11.62 11.18 -147.43 -1.65 -13.26 16 30 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.04 1.69 6.51 -2.38 -0.02 1.67 16 32 H 0.04 1.52 6.35 -2.39 -0.02 1.51 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.03 1.47 7.44 -2.39 -0.02 1.45 16 40 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.41 16.87 7.37 -92.71 -0.68 16.18 16 42 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 43 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 44 H 0.07 2.08 8.10 -2.39 -0.02 2.06 16 45 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.09 1.08 7.70 -2.39 -0.02 1.06 16 50 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -71.99 406.80 0.38 -71.61 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: -0.13 Total: 38.46 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 5.15 Total: 17.71 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -3.25 Total: -114.93 kcal Atomic # 8 Polarization: -52.42 SS G_CDS: -3.22 Total: -55.64 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.83 Total: 42.79 kcal Total: -71.99 0.38 -71.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566923739.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.559 kcal (2) G-P(sol) polarization free energy of solvation -71.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds