Wall clock time and date at job start Sat Apr 11 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99468 * 2 1 4 4 H 1.48495 * 109.47387 * 269.99835 * 3 2 1 5 5 H 1.48498 * 109.47286 * 30.00257 * 3 2 1 6 6 H 1.48505 * 109.46979 * 150.00176 * 3 2 1 7 7 C 1.38807 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99982 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99785 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46946 * 155.00180 * 10 9 7 12 12 C 1.52997 * 109.47449 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47107 * 300.00186 * 12 11 10 14 14 N 1.46503 * 109.47146 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00318 * 155.00006 * 14 13 12 16 16 O 1.21279 * 119.99572 * 359.97438 * 15 14 13 17 17 C 1.50692 * 120.00378 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47287 * 180.02562 * 17 15 14 19 19 O 1.42903 * 109.47181 * 180.02562 * 18 17 15 20 20 C 1.42904 * 113.99958 * 179.97438 * 19 18 17 21 21 C 1.52995 * 109.47026 * 179.97438 * 20 19 18 22 22 H 1.09000 * 110.36224 * 304.31352 * 21 20 19 23 23 C 1.55503 * 110.28399 * 182.20315 * 21 20 19 24 24 C 1.55305 * 100.69731 * 204.65557 * 23 21 20 25 25 C 1.54382 * 102.43395 * 34.13038 * 24 23 21 26 26 O 1.43232 * 107.59109 * 338.54226 * 25 24 23 27 27 C 1.53001 * 109.47134 * 59.99974 * 13 12 11 28 28 C 1.52997 * 109.47717 * 275.00120 * 10 9 7 29 29 H 0.96992 * 120.00527 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00431 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47453 * 35.00657 * 10 9 7 32 32 H 1.09003 * 109.47269 * 60.00408 * 11 10 9 33 33 H 1.08998 * 109.47641 * 300.00400 * 11 10 9 34 34 H 1.08996 * 109.47522 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47306 * 60.00259 * 12 11 10 36 36 H 1.08990 * 109.47050 * 299.99685 * 13 12 11 37 37 H 0.97006 * 119.99664 * 334.99874 * 14 13 12 38 38 H 1.08998 * 109.47726 * 59.99876 * 17 15 14 39 39 H 1.09006 * 109.47224 * 299.99974 * 17 15 14 40 40 H 1.09000 * 109.47306 * 59.99950 * 18 17 15 41 41 H 1.08999 * 109.47463 * 299.99712 * 18 17 15 42 42 H 1.09008 * 109.47001 * 60.00433 * 20 19 18 43 43 H 1.08996 * 109.47300 * 300.00378 * 20 19 18 44 44 H 1.09007 * 111.32681 * 86.78156 * 23 21 20 45 45 H 1.08995 * 111.14910 * 322.45919 * 23 21 20 46 46 H 1.09002 * 110.85041 * 275.83884 * 24 23 21 47 47 H 1.09001 * 110.84389 * 152.42021 * 24 23 21 48 48 H 1.09009 * 109.82643 * 98.05629 * 25 24 23 49 49 H 1.08995 * 109.83122 * 219.02553 * 25 24 23 50 50 H 1.09005 * 109.47046 * 59.99651 * 27 13 12 51 51 H 1.08998 * 109.46773 * 180.02562 * 27 13 12 52 52 H 1.09001 * 109.47097 * 300.00755 * 28 10 9 53 53 H 1.09009 * 109.47117 * 60.00182 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.1816 -4.7523 0.6081 12 6 1.9468 -6.0772 0.6076 13 6 2.3102 -6.4557 -0.8297 14 7 3.0435 -7.7240 -0.8302 15 6 3.0347 -8.5071 -1.9270 16 8 2.4193 -8.1620 -2.9134 17 6 3.7884 -9.8120 -1.9273 18 6 3.6165 -10.4999 -3.2830 19 8 4.3309 -11.7376 -3.2831 20 6 4.2347 -12.4642 -4.5098 21 6 5.0333 -13.7642 -4.3966 22 1 6.0655 -13.5521 -4.1178 23 6 4.9873 -14.5441 -5.7411 24 6 5.2420 -15.9928 -5.2430 25 6 4.5400 -15.9998 -3.8680 26 8 4.4265 -14.6399 -3.4330 27 6 3.1870 -5.3600 -1.4395 28 6 2.4211 -4.0349 -1.4390 29 1 -0.4850 0.8399 0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 2.9693 -3.5507 0.5872 32 1 0.2704 -4.8584 0.0192 33 1 0.9230 -4.4830 1.6321 34 1 1.3224 -6.8576 1.0424 35 1 2.8577 -5.9709 1.1967 36 1 1.3994 -6.5620 -1.4187 37 1 3.5354 -8.0001 -0.0410 38 1 3.3985 -10.4571 -1.1400 39 1 4.8466 -9.6204 -1.7491 40 1 4.0069 -9.8547 -4.0700 41 1 2.5585 -10.6916 -3.4617 42 1 4.6381 -11.8600 -5.3225 43 1 3.1894 -12.6961 -4.7138 44 1 5.7774 -14.2163 -6.4168 45 1 4.0086 -14.4571 -6.2129 46 1 6.3097 -16.1837 -5.1344 47 1 4.7861 -16.7199 -5.9150 48 1 3.5481 -16.4421 -3.9616 49 1 5.1338 -16.5686 -3.1525 50 1 4.0979 -5.2537 -0.8503 51 1 3.4454 -5.6295 -2.4635 52 1 1.5100 -4.1409 -2.0279 53 1 3.0458 -3.2543 -1.8735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566984889.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:38 Heat of formation + Delta-G solvation = -165.815161 kcal Electronic energy + Delta-G solvation = -28913.444642 eV Core-core repulsion = 24783.292098 eV Total energy + Delta-G solvation = -4130.152544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.13856 -40.46707 -39.40508 -38.52392 -36.36812 -34.65111 -33.37648 -33.01800 -32.29649 -31.68209 -31.06866 -28.88512 -26.45112 -25.67396 -24.51428 -23.60342 -22.54352 -22.42264 -22.14622 -21.37581 -20.76178 -19.12703 -18.41674 -18.02848 -17.43536 -17.16509 -16.93686 -16.89332 -16.72660 -16.10861 -15.82633 -15.64088 -15.38207 -15.06594 -15.02175 -14.77366 -14.63171 -14.27738 -13.98116 -13.76055 -13.50627 -13.40117 -13.14837 -13.07891 -12.82230 -12.68661 -12.48289 -12.44124 -12.30566 -12.24797 -12.13698 -12.12181 -12.09647 -12.02586 -11.69508 -11.65599 -11.45711 -11.20162 -10.92722 -10.80366 -10.65220 -10.47522 -10.01677 -8.98809 -7.92946 -5.21085 1.46985 1.48742 1.56913 1.62706 1.96753 2.56962 2.73296 2.88068 3.40062 3.55224 3.70706 3.79493 3.81286 3.87977 3.91739 3.97387 4.04693 4.14192 4.16395 4.30463 4.32845 4.38274 4.38503 4.41355 4.49569 4.50048 4.56633 4.58255 4.60617 4.66724 4.79787 4.82762 4.84347 4.88649 4.90459 4.98279 5.01215 5.01443 5.12893 5.15469 5.23411 5.25964 5.28625 5.48694 5.55371 5.56017 5.64748 6.04248 6.19376 6.29844 6.59132 7.28246 7.35262 8.13098 8.35399 9.30840 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.038470 B = 0.001383 C = 0.001360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.661805 B =20244.913479 C =20577.227344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.970 3.030 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.172 3.828 11 C -0.114 4.114 12 C -0.105 4.105 13 C 0.151 3.849 14 N -0.708 5.708 15 C 0.515 3.485 16 O -0.588 6.588 17 C -0.128 4.128 18 C 0.079 3.921 19 O -0.397 6.397 20 C 0.059 3.941 21 C 0.077 3.923 22 H 0.078 0.922 23 C -0.145 4.145 24 C -0.150 4.150 25 C 0.038 3.962 26 O -0.404 6.404 27 C -0.112 4.112 28 C -0.123 4.123 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.419 0.581 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.047 0.953 52 H 0.037 0.963 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.270 -35.322 -6.969 38.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.799 3.201 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.379 5.379 10 C 0.064 3.936 11 C -0.153 4.153 12 C -0.143 4.143 13 C 0.047 3.953 14 N -0.360 5.360 15 C 0.303 3.697 16 O -0.469 6.469 17 C -0.168 4.168 18 C 0.002 3.998 19 O -0.317 6.317 20 C -0.017 4.017 21 C 0.020 3.980 22 H 0.096 0.904 23 C -0.182 4.182 24 C -0.187 4.187 25 C -0.038 4.038 26 O -0.324 6.324 27 C -0.151 4.151 28 C -0.164 4.164 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.257 0.743 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.123 0.877 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.118 0.882 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.066 0.934 52 H 0.056 0.944 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 13.000 -34.968 -7.274 38.009 hybrid contribution -0.270 1.359 -0.315 1.421 sum 12.730 -33.609 -7.589 36.732 Atomic orbital electron populations 1.69817 1.06629 1.25909 1.59903 1.25531 0.96327 1.01008 1.04064 0.85184 0.77843 0.79756 0.77279 1.21782 1.22223 1.19233 1.19642 0.91419 0.85342 1.40517 0.90667 1.42675 1.05432 1.01156 1.88593 1.20496 0.94557 0.85013 0.93540 1.21643 0.98379 0.94265 1.00984 1.21647 1.01748 0.96515 0.94429 1.20837 0.94415 0.82438 0.97649 1.45916 1.52750 1.20604 1.16732 1.20889 0.80323 0.86026 0.82469 1.90722 1.45787 1.75302 1.35052 1.21413 1.03316 0.92731 0.99334 1.22061 0.95727 0.84785 0.97233 1.87825 1.73287 1.33784 1.36767 1.22827 1.00134 0.91921 0.86841 1.23238 0.96581 0.89014 0.89169 0.90414 1.23363 1.04425 0.94532 0.95929 1.23120 1.02309 0.97308 0.95984 1.23332 1.01042 0.83143 0.96315 1.88486 1.80267 1.17095 1.46542 1.21771 0.98997 0.93839 1.00491 1.22041 0.98952 0.95993 0.99431 0.94152 0.79764 0.93367 0.92998 0.91460 0.89365 0.89290 0.91909 0.74342 0.86105 0.85866 0.93038 0.93639 0.90256 0.92877 0.87652 0.89737 0.89522 0.88247 0.90993 0.90923 0.90447 0.93372 0.94395 0.94119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 4 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.24 -13.32 9.93 84.03 0.83 -12.49 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.77 5.12 -322.95 -1.65 -39.42 16 10 C 0.17 6.69 2.77 44.99 0.12 6.82 16 11 C -0.11 -3.53 5.39 30.59 0.16 -3.37 16 12 C -0.11 -2.28 5.39 30.59 0.16 -2.12 16 13 C 0.15 3.73 2.45 44.99 0.11 3.84 16 14 N -0.71 -13.01 5.08 -442.55 -2.25 -15.25 16 15 C 0.52 11.36 7.79 87.66 0.68 12.05 16 16 O -0.59 -18.78 15.64 -3.03 -0.05 -18.82 16 17 C -0.13 -1.97 6.07 29.84 0.18 -1.79 16 18 C 0.08 1.51 5.23 71.98 0.38 1.89 16 19 O -0.40 -7.87 10.33 -147.42 -1.52 -9.39 16 20 C 0.06 0.91 5.65 71.98 0.41 1.32 16 21 C 0.08 1.06 3.74 31.45 0.12 1.17 16 22 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 23 C -0.14 -1.05 6.61 32.25 0.21 -0.84 16 24 C -0.15 -0.91 7.00 31.86 0.22 -0.69 16 25 C 0.04 0.42 7.80 72.45 0.56 0.98 16 26 O -0.40 -7.47 11.03 -147.42 -1.63 -9.10 16 27 C -0.11 -3.20 5.50 30.61 0.17 -3.03 16 28 C -0.12 -4.57 5.51 30.61 0.17 -4.40 16 29 H 0.25 15.10 8.31 -92.71 -0.77 14.32 16 30 H 0.37 20.47 7.80 -92.71 -0.72 19.75 16 31 H 0.05 1.86 8.08 -2.39 -0.02 1.85 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 37 H 0.42 4.53 8.60 -92.70 -0.80 3.73 16 38 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 41 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 45 H 0.08 0.58 8.06 -2.39 -0.02 0.56 16 46 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 47 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 49 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 51 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 53 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -76.28 422.48 -0.46 -76.74 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -0.64 Total: 31.37 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 4.97 Total: -4.69 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -3.62 Total: -114.87 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -3.20 Total: -37.31 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -76.28 -0.46 -76.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566984889.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.076 kcal (2) G-P(sol) polarization free energy of solvation -76.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds