Wall clock time and date at job start Sat Apr 11 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48496 * 109.46861 * 273.98501 * 3 2 1 5 5 H 1.48497 * 109.47269 * 33.98432 * 3 2 1 6 6 H 1.48499 * 109.47386 * 153.98461 * 3 2 1 7 7 C 1.38809 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99976 * 352.06778 * 7 2 1 9 9 N 1.36932 * 120.00225 * 172.06220 * 7 2 1 10 10 C 1.47423 * 125.65267 * 307.09317 * 9 7 2 11 11 C 1.54915 * 104.83415 * 155.82953 * 10 9 7 12 12 C 1.55155 * 101.57983 * 37.01441 * 11 10 9 13 13 C 1.47027 * 125.64838 * 127.05210 * 9 7 2 14 14 H 1.09010 * 109.88082 * 300.66872 * 13 9 7 15 15 C 1.52993 * 109.88597 * 61.67647 * 13 9 7 16 16 C 1.53000 * 109.47362 * 289.53139 * 15 13 9 17 17 C 1.52997 * 109.47148 * 186.08996 * 16 15 13 18 18 N 1.46502 * 109.46818 * 179.97438 * 17 16 15 19 19 C 1.34780 * 119.99952 * 179.97438 * 18 17 16 20 20 O 1.21277 * 119.99664 * 0.02562 * 19 18 17 21 21 C 1.50695 * 119.99999 * 179.72589 * 19 18 17 22 22 O 1.42904 * 109.47041 * 180.27649 * 21 19 18 23 23 C 1.42901 * 114.00070 * 179.97438 * 22 21 19 24 24 C 1.52994 * 109.47360 * 180.02562 * 23 22 21 25 25 H 1.08999 * 109.87020 * 54.29457 * 24 23 22 26 26 C 1.54097 * 109.88273 * 175.30819 * 24 23 22 27 27 C 1.54813 * 104.19112 * 121.45025 * 26 24 23 28 28 C 1.54996 * 102.09041 * 20.88565 * 27 26 24 29 29 O 1.43747 * 109.87760 * 293.29237 * 24 23 22 30 30 H 0.97007 * 119.99684 * 359.97438 * 1 2 3 31 31 H 1.08993 * 110.37085 * 274.67662 * 10 9 7 32 32 H 1.09005 * 110.36384 * 36.99532 * 10 9 7 33 33 H 1.09004 * 111.00151 * 155.08155 * 11 10 9 34 34 H 1.08997 * 111.01078 * 278.89986 * 11 10 9 35 35 H 1.09001 * 110.72157 * 206.13007 * 12 11 10 36 36 H 1.09006 * 110.72189 * 82.85461 * 12 11 10 37 37 H 1.08997 * 109.47270 * 169.52984 * 15 13 9 38 38 H 1.09004 * 109.46821 * 49.52742 * 15 13 9 39 39 H 1.09001 * 109.46926 * 66.08770 * 16 15 13 40 40 H 1.09002 * 109.46947 * 306.09278 * 16 15 13 41 41 H 1.08995 * 109.47141 * 60.00429 * 17 16 15 42 42 H 1.08996 * 109.47176 * 299.99617 * 17 16 15 43 43 H 0.96996 * 120.00313 * 0.02562 * 18 17 16 44 44 H 1.08994 * 109.47098 * 300.27695 * 21 19 18 45 45 H 1.09000 * 109.47455 * 60.27892 * 21 19 18 46 46 H 1.09000 * 109.47033 * 300.00608 * 23 22 21 47 47 H 1.09000 * 109.47216 * 60.00097 * 23 22 21 48 48 H 1.08996 * 110.48662 * 240.13237 * 26 24 23 49 49 H 1.09005 * 110.48440 * 2.77536 * 26 24 23 50 50 H 1.08999 * 110.90562 * 139.07880 * 27 26 24 51 51 H 1.08998 * 110.90856 * 262.68379 * 27 26 24 52 52 H 1.08991 * 110.62498 * 81.47317 * 28 27 26 53 53 H 1.09003 * 110.61869 * 204.32268 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4134 2.0950 -1.3967 5 1 1.4924 2.6269 0.7826 6 1 3.5873 1.4174 0.6141 7 6 2.0102 -1.2021 0.0005 8 1 1.4780 -2.1329 0.1300 9 7 3.3697 -1.2079 -0.1632 10 6 4.1055 -0.5572 -1.2625 11 6 5.5258 -0.3082 -0.6963 12 6 5.7456 -1.5805 0.1641 13 6 4.3374 -1.8634 0.7287 14 1 4.2501 -1.4542 1.7353 15 6 4.0812 -3.3714 0.7563 16 6 2.7761 -3.6534 1.5035 17 6 2.5965 -5.1643 1.6638 18 7 1.3471 -5.4342 2.3798 19 6 0.9787 -6.7050 2.6367 20 8 1.6817 -7.6249 2.2756 21 6 -0.3033 -6.9824 3.3786 22 8 -0.4688 -8.3935 3.5324 23 6 -1.6603 -8.7666 4.2275 24 6 -1.7327 -10.2912 4.3336 25 1 -0.8192 -10.6747 4.7881 26 6 -2.9520 -10.7001 5.1826 27 6 -3.7900 -11.5947 4.2370 28 6 -2.7361 -12.0372 3.1902 29 8 -1.9065 -10.8644 3.0269 30 1 -0.4850 0.8401 0.0004 31 1 4.1529 -1.2159 -2.1296 32 1 3.6322 0.3880 -1.5286 33 1 6.2612 -0.2474 -1.4987 34 1 5.5487 0.5901 -0.0794 35 1 6.4520 -1.3834 0.9705 36 1 6.0868 -2.4104 -0.4547 37 1 4.9060 -3.8709 1.2645 38 1 4.0034 -3.7455 -0.2646 39 1 1.9383 -3.2458 0.9378 40 1 2.8123 -3.1854 2.4872 41 1 3.4343 -5.5718 2.2295 42 1 2.5603 -5.6323 0.6801 43 1 0.7848 -4.6985 2.6682 44 1 -0.2636 -6.5121 4.3610 45 1 -1.1440 -6.5773 2.8155 46 1 -1.6484 -8.3332 5.2275 47 1 -2.5294 -8.3984 3.6823 48 1 -2.6344 -11.2642 6.0595 49 1 -3.5223 -9.8200 5.4799 50 1 -4.1926 -12.4553 4.7713 51 1 -4.5891 -11.0220 3.7665 52 1 -2.1465 -12.8723 3.5682 53 1 -3.2179 -12.3038 2.2495 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567266706.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:00 Heat of formation + Delta-G solvation = -136.669783 kcal Electronic energy + Delta-G solvation = -29419.482601 eV Core-core repulsion = 25290.593896 eV Total energy + Delta-G solvation = -4128.888705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.90418 -40.39955 -39.62746 -38.35244 -36.55145 -34.59495 -33.92029 -33.17436 -31.86298 -31.69811 -30.33052 -28.55340 -26.43787 -26.05406 -25.18972 -23.00600 -22.84377 -22.07168 -21.78715 -21.41958 -20.83192 -18.89327 -18.37861 -17.93797 -17.83139 -17.53946 -17.12472 -16.81191 -16.56471 -16.33698 -16.17739 -15.92921 -15.34874 -15.05024 -14.91467 -14.63386 -14.52004 -14.08456 -14.00626 -13.91318 -13.62414 -13.39143 -13.13192 -13.02898 -12.95226 -12.81356 -12.57078 -12.46135 -12.41058 -12.31228 -12.11654 -12.08140 -11.88643 -11.60018 -11.57242 -11.38586 -11.35080 -11.10807 -10.83192 -10.74430 -10.66852 -10.61302 -10.11904 -8.39686 -8.03834 -5.75876 1.32909 1.40168 1.53560 1.53969 1.81954 2.45398 2.87464 2.98658 3.13550 3.45650 3.61028 3.72450 3.90645 3.91946 3.96197 4.05099 4.13690 4.16049 4.17940 4.19636 4.24714 4.27597 4.30029 4.42310 4.46989 4.49155 4.59076 4.62523 4.74322 4.80021 4.81606 4.85036 4.89999 4.94119 4.95581 5.00104 5.05100 5.06523 5.19175 5.20072 5.23864 5.30649 5.43684 5.45802 5.56518 5.67870 5.90998 6.05122 6.10014 6.45576 6.53962 6.99052 7.18724 7.57976 8.36838 9.02465 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.001775 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.021741 B =15772.473920 C =16774.954550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.013 4.013 3 Si 0.944 3.056 4 H -0.288 1.288 5 H -0.310 1.310 6 H -0.250 1.250 7 C -0.236 4.236 8 H 0.066 0.934 9 N -0.619 5.619 10 C 0.108 3.892 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.146 3.854 14 H 0.030 0.970 15 C -0.107 4.107 16 C -0.127 4.127 17 C 0.131 3.869 18 N -0.716 5.716 19 C 0.506 3.494 20 O -0.578 6.578 21 C 0.047 3.953 22 O -0.394 6.394 23 C 0.056 3.944 24 C 0.069 3.931 25 H 0.065 0.935 26 C -0.142 4.142 27 C -0.149 4.149 28 C 0.031 3.969 29 O -0.403 6.403 30 H 0.261 0.739 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.415 0.585 44 H 0.115 0.885 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.103 0.897 51 H 0.079 0.921 52 H 0.066 0.934 53 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -16.747 12.449 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.210 4.210 3 Si 0.774 3.226 4 H -0.215 1.215 5 H -0.239 1.239 6 H -0.173 1.173 7 C -0.366 4.366 8 H 0.083 0.917 9 N -0.346 5.346 10 C -0.016 4.016 11 C -0.169 4.169 12 C -0.154 4.154 13 C 0.041 3.959 14 H 0.048 0.952 15 C -0.147 4.147 16 C -0.165 4.165 17 C 0.008 3.992 18 N -0.369 5.369 19 C 0.293 3.707 20 O -0.458 6.458 21 C -0.032 4.032 22 O -0.313 6.313 23 C -0.020 4.020 24 C 0.011 3.989 25 H 0.083 0.917 26 C -0.179 4.179 27 C -0.187 4.187 28 C -0.045 4.045 29 O -0.323 6.323 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.251 0.749 44 H 0.133 0.867 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.082 0.918 48 H 0.116 0.884 49 H 0.114 0.886 50 H 0.121 0.879 51 H 0.098 0.902 52 H 0.084 0.916 53 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.555 -17.362 11.944 21.131 hybrid contribution -0.638 1.476 -0.114 1.612 sum -2.193 -15.886 11.830 19.928 Atomic orbital electron populations 1.69886 1.07421 1.27273 1.54774 1.26483 0.95686 1.01506 0.97365 0.85731 0.79744 0.80103 0.77041 1.21527 1.23912 1.17330 1.18641 0.81021 0.92063 1.44861 0.91708 1.44751 1.01561 1.63745 1.24588 1.22001 0.92639 0.95010 0.91995 1.22769 0.95830 0.98226 1.00051 1.22587 0.95463 0.97539 0.99791 1.21325 0.89338 0.91899 0.93308 0.95164 1.21785 0.96402 0.96980 0.99538 1.21966 1.00637 0.92506 1.01371 1.21313 0.85599 0.96667 0.95640 1.45936 1.25016 1.07499 1.58488 1.20918 0.87713 0.82552 0.79490 1.90686 1.55873 1.45373 1.53853 1.22306 0.94984 0.83993 1.01956 1.88021 1.43442 1.21163 1.78685 1.23059 0.86893 0.94549 0.97505 1.22927 0.99404 0.92261 0.84273 0.91698 1.22943 0.94680 1.01600 0.98694 1.23138 0.98023 1.00797 0.96723 1.23839 0.91585 0.88241 1.00858 1.89045 1.71922 1.42673 1.28664 0.92962 0.95193 0.96368 0.88691 0.92410 0.89331 0.89958 0.90352 0.93305 0.90897 0.91726 0.91635 0.93532 0.74880 0.86695 0.88190 0.88865 0.91805 0.88447 0.88587 0.87869 0.90245 0.91559 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.24 13.97 21.65 0.30 -56.93 16 2 C -0.01 -0.75 5.50 84.86 0.47 -0.28 16 3 Si 0.94 45.82 25.12 68.60 1.72 47.54 16 4 H -0.29 -13.84 7.00 99.48 0.70 -13.15 16 5 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 6 H -0.25 -11.38 6.43 99.48 0.64 -10.74 16 7 C -0.24 -12.60 9.34 84.03 0.79 -11.81 16 8 H 0.07 3.71 5.18 -2.91 -0.02 3.69 16 9 N -0.62 -27.72 2.38 -668.25 -1.59 -29.31 16 10 C 0.11 4.35 6.19 86.86 0.54 4.89 16 11 C -0.13 -4.03 7.09 31.99 0.23 -3.80 16 12 C -0.12 -3.25 6.47 31.78 0.21 -3.04 16 13 C 0.15 5.26 3.21 45.34 0.15 5.41 16 14 H 0.03 1.15 8.10 -2.38 -0.02 1.13 16 15 C -0.11 -3.46 4.69 30.59 0.14 -3.31 16 16 C -0.13 -4.26 4.86 30.59 0.15 -4.11 16 17 C 0.13 4.10 5.67 86.38 0.49 4.59 16 18 N -0.72 -20.44 5.56 -463.07 -2.57 -23.02 16 19 C 0.51 15.87 7.91 87.65 0.69 16.56 16 20 O -0.58 -23.94 16.50 16.02 0.26 -23.67 16 21 C 0.05 1.06 6.42 71.23 0.46 1.52 16 22 O -0.39 -11.02 9.86 -126.64 -1.25 -12.27 16 23 C 0.06 1.04 5.39 71.98 0.39 1.43 16 24 C 0.07 1.30 3.70 30.96 0.11 1.41 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 C -0.14 -1.44 6.64 31.58 0.21 -1.23 16 27 C -0.15 -1.47 7.16 31.90 0.23 -1.24 16 28 C 0.03 0.48 7.72 72.66 0.56 1.04 16 29 O -0.40 -10.06 11.19 -147.06 -1.65 -11.70 16 30 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.02 0.80 4.62 -2.38 -0.01 0.79 16 33 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.06 1.86 7.53 -2.39 -0.02 1.84 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.05 7.85 -2.38 -0.02 2.03 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.68 8.14 -2.38 -0.02 1.67 16 39 H 0.07 3.02 4.50 -2.39 -0.01 3.01 16 40 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.41 10.02 8.47 -92.71 -0.79 9.23 16 44 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.10 0.70 7.70 -2.38 -0.02 0.68 16 50 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -78.13 411.89 1.06 -77.07 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.03 Total: 24.29 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.80 Total: 8.01 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.86 Total: -109.26 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -2.63 Total: -47.64 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.72 Total: 47.54 kcal Total: -78.13 1.06 -77.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567266706.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.602 kcal (2) G-P(sol) polarization free energy of solvation -78.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds