Wall clock time and date at job start Sat Apr 11 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.57481 * 2 1 4 4 C 1.53176 * 109.52066 * 120.16071 * 2 1 3 5 5 C 1.53174 * 109.04093 * 62.92160 * 4 2 1 6 6 C 1.53092 * 109.16443 * 56.97983 * 5 4 2 7 7 H 1.09002 * 109.47953 * 62.38353 * 6 5 4 8 8 C 1.53004 * 109.48263 * 182.41229 * 6 5 4 9 9 C 1.50694 * 109.46872 * 185.00166 * 8 6 5 10 10 O 1.21277 * 120.00662 * 359.97438 * 9 8 6 11 11 N 1.34781 * 119.99813 * 179.97438 * 9 8 6 12 12 C 1.46496 * 120.00117 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47297 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.51347 * 305.10311 * 13 12 11 15 15 C 1.53295 * 109.51244 * 185.00148 * 13 12 11 16 16 N 1.47159 * 108.38336 * 187.77338 * 15 13 12 17 17 C 1.36933 * 120.98371 * 230.51307 * 16 15 13 18 18 H 1.08001 * 119.99853 * 26.25146 * 17 16 15 19 19 C 1.38809 * 120.00237 * 206.24041 * 17 16 15 20 20 N 1.31619 * 119.99832 * 16.92596 * 19 17 16 21 21 Si 1.86799 * 120.00308 * 196.92158 * 19 17 16 22 22 H 1.48498 * 109.46841 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47141 * 120.00464 * 21 19 17 24 24 H 1.48500 * 109.46975 * 240.00671 * 21 19 17 25 25 C 1.47147 * 118.03170 * 50.53997 * 16 15 13 26 26 C 1.53299 * 108.38753 * 309.45948 * 25 16 15 27 27 O 1.42958 * 109.50917 * 65.25981 * 13 12 11 28 28 O 1.42904 * 109.41356 * 302.39331 * 6 5 4 29 29 C 1.42909 * 114.09949 * 61.15820 * 28 6 5 30 30 H 1.09008 * 109.46803 * 299.84730 * 1 2 3 31 31 H 1.09004 * 109.47522 * 59.83876 * 1 2 3 32 32 H 1.08999 * 109.47726 * 179.84647 * 1 2 3 33 33 H 1.09004 * 109.47142 * 180.16262 * 3 2 1 34 34 H 1.09002 * 109.47320 * 300.15102 * 3 2 1 35 35 H 1.08993 * 109.47231 * 60.15950 * 3 2 1 36 36 H 1.08997 * 109.54069 * 303.05414 * 4 2 1 37 37 H 1.09006 * 109.54009 * 182.79015 * 4 2 1 38 38 H 1.09004 * 109.52187 * 297.07387 * 5 4 2 39 39 H 1.08995 * 109.57912 * 176.91813 * 5 4 2 40 40 H 1.08997 * 109.46960 * 65.00235 * 8 6 5 41 41 H 1.09001 * 109.46944 * 304.99786 * 8 6 5 42 42 H 0.96997 * 119.99577 * 0.02562 * 11 9 8 43 43 H 1.09010 * 109.47233 * 60.00401 * 12 11 9 44 44 H 1.08996 * 109.47501 * 300.00701 * 12 11 9 45 45 H 1.08997 * 109.68210 * 68.05724 * 15 13 12 46 46 H 1.08993 * 109.71469 * 307.51677 * 15 13 12 47 47 H 0.97000 * 120.00544 * 179.97438 * 20 19 17 48 48 H 1.09004 * 109.68770 * 69.18793 * 25 16 15 49 49 H 1.09002 * 109.68121 * 189.74003 * 25 16 15 50 50 H 1.08993 * 109.51514 * 172.22905 * 26 25 16 51 51 H 1.08997 * 109.51705 * 292.38443 * 26 25 16 52 52 H 1.08997 * 109.47853 * 178.85711 * 29 28 6 53 53 H 1.08994 * 109.47873 * 58.81944 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4415 0.0000 4 6 2.0418 -0.7254 1.2483 5 6 1.5876 -2.1873 1.1982 6 6 2.0968 -2.8278 -0.0957 7 1 3.1868 -2.8199 -0.1007 8 6 1.5966 -4.2712 -0.1819 9 6 2.1972 -4.9395 -1.3917 10 8 2.9507 -4.3222 -2.1141 11 7 1.8969 -6.2234 -1.6709 12 6 2.4803 -6.8730 -2.8472 13 6 1.9811 -8.3168 -2.9327 14 1 2.1981 -8.8330 -1.9976 15 6 2.6861 -9.0346 -4.0893 16 7 2.0576 -10.3531 -4.2691 17 6 2.8151 -11.4920 -4.3342 18 1 3.7817 -11.5258 -3.8537 19 6 2.3404 -12.6031 -5.0175 20 7 1.3459 -12.4760 -5.8702 21 14 3.1132 -14.2788 -4.7270 22 1 4.2056 -14.1537 -3.7289 23 1 2.0818 -15.2179 -4.2179 24 1 3.6670 -14.7965 -6.0039 25 6 0.5913 -10.4113 -4.3775 26 6 -0.0116 -9.6263 -3.2069 27 8 0.5707 -8.3212 -3.1658 28 8 1.6096 -2.0868 -1.2163 29 6 2.0415 -0.7249 -1.2477 30 1 -0.3633 0.5115 0.8914 31 1 -0.3634 0.5163 -0.8885 32 1 -0.3634 -1.0276 -0.0028 33 1 3.1326 1.4395 -0.0029 34 1 1.6779 1.9568 -0.8886 35 1 1.6825 1.9552 0.8913 36 1 1.6356 -0.2477 2.1398 37 1 3.1307 -0.6825 1.2741 38 1 0.4987 -2.2315 1.2224 39 1 1.9930 -2.7253 2.0550 40 1 0.5099 -4.2746 -0.2669 41 1 1.8925 -4.8126 0.7166 42 1 1.2939 -6.7170 -1.0933 43 1 3.5671 -6.8691 -2.7629 44 1 2.1838 -6.3318 -3.7457 45 1 3.7427 -9.1608 -3.8536 46 1 2.5811 -8.4502 -5.0033 47 1 1.0144 -13.2523 -6.3481 48 1 0.2748 -9.9652 -5.3204 49 1 0.2608 -11.4490 -4.3326 50 1 -1.0896 -9.5399 -3.3432 51 1 0.1973 -10.1477 -2.2728 52 1 1.6452 -0.2384 -2.1389 53 1 3.1307 -0.6894 -1.2677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568221604.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:22 Heat of formation + Delta-G solvation = -144.757777 kcal Electronic energy + Delta-G solvation = -30413.685852 eV Core-core repulsion = 26284.446426 eV Total energy + Delta-G solvation = -4129.239427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.24535 -40.48381 -39.80277 -36.54905 -36.23916 -35.66692 -34.15633 -33.36591 -32.39538 -30.65336 -29.16138 -28.16433 -27.38567 -26.68864 -25.21084 -24.84501 -23.36375 -22.53132 -21.72000 -20.97016 -19.79496 -18.90384 -17.98208 -17.60096 -17.38095 -17.18655 -16.84679 -16.48995 -16.16684 -15.93235 -15.90373 -15.51661 -15.45589 -15.11805 -15.01606 -14.73597 -14.59633 -14.40545 -13.97586 -13.72794 -13.50898 -13.22786 -13.03792 -13.02722 -12.86951 -12.79293 -12.73909 -12.70407 -12.51191 -12.42248 -12.17523 -12.05742 -11.92351 -11.87446 -11.74364 -11.34288 -11.33858 -11.09379 -10.85051 -10.78315 -10.54530 -10.18684 -10.04263 -8.76892 -7.92281 -5.39919 1.45707 1.47371 1.58262 1.75563 2.21421 2.48073 2.78410 2.90032 3.22793 3.48387 3.69262 3.75730 3.81666 3.85822 3.99338 4.06576 4.07132 4.19104 4.23903 4.33572 4.42814 4.48197 4.52181 4.57996 4.61614 4.65789 4.68665 4.70805 4.74195 4.79447 4.82309 4.85784 4.89797 4.91282 4.97598 5.04492 5.06272 5.08995 5.15510 5.23676 5.25960 5.32827 5.41691 5.46645 5.54582 5.56230 5.60373 6.25194 6.32701 6.40210 6.64195 7.04945 7.35122 7.72850 8.26738 9.13965 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.034736 B = 0.001784 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.888690 B =15687.229571 C =15812.926940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.110 4.110 5 C -0.146 4.146 6 C 0.102 3.898 7 H 0.046 0.954 8 C -0.128 4.128 9 C 0.508 3.492 10 O -0.580 6.580 11 N -0.716 5.716 12 C 0.142 3.858 13 C 0.081 3.919 14 H 0.072 0.928 15 C 0.115 3.885 16 N -0.612 5.612 17 C -0.266 4.266 18 H 0.073 0.927 19 C -0.052 4.052 20 N -0.937 5.937 21 Si 0.973 3.027 22 H -0.264 1.264 23 H -0.287 1.287 24 H -0.294 1.294 25 C 0.142 3.858 26 C 0.054 3.946 27 O -0.390 6.390 28 O -0.391 6.391 29 C 0.070 3.930 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.142 0.858 42 H 0.414 0.586 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.014 0.986 47 H 0.252 0.748 48 H -0.003 1.003 49 H 0.068 0.932 50 H 0.109 0.891 51 H 0.054 0.946 52 H 0.086 0.914 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 23.545 19.655 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.147 4.147 5 C -0.183 4.183 6 C 0.044 3.956 7 H 0.064 0.936 8 C -0.167 4.167 9 C 0.296 3.704 10 O -0.460 6.460 11 N -0.369 5.369 12 C 0.017 3.983 13 C 0.022 3.978 14 H 0.090 0.910 15 C -0.011 4.011 16 N -0.337 5.337 17 C -0.395 4.395 18 H 0.091 0.909 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.800 3.200 22 H -0.189 1.189 23 H -0.213 1.213 24 H -0.221 1.221 25 C 0.016 3.984 26 C -0.023 4.023 27 O -0.309 6.309 28 O -0.310 6.310 29 C -0.007 4.007 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.251 0.749 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.032 0.968 47 H 0.061 0.939 48 H 0.015 0.985 49 H 0.087 0.913 50 H 0.126 0.874 51 H 0.072 0.928 52 H 0.104 0.896 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.913 23.935 18.878 30.543 hybrid contribution 0.394 -1.487 -0.543 1.631 sum -1.520 22.448 18.335 29.024 Atomic orbital electron populations 1.21782 0.93594 1.01931 1.01778 1.21208 0.96999 0.96297 0.95562 1.21773 1.00979 0.94153 1.02589 1.21664 1.00672 0.94867 0.97545 1.22242 1.02639 0.96457 0.96974 1.21865 0.97135 0.89984 0.86585 0.93614 1.21828 1.03640 0.94390 0.96855 1.21232 0.80701 0.81090 0.87384 1.90692 1.38392 1.64586 1.52284 1.45873 1.49701 1.12849 1.28445 1.21096 0.98021 0.90270 0.88891 1.22627 0.82199 0.94790 0.98208 0.90969 1.21612 0.97129 0.86709 0.95649 1.44357 1.02110 1.01831 1.85381 1.19598 1.02325 0.90684 1.26918 0.90888 1.25854 0.99881 1.02772 0.96191 1.70202 1.30825 1.29677 1.27572 0.85130 0.77938 0.79602 0.77291 1.18862 1.21332 1.22131 1.21327 0.83370 0.99554 0.94104 1.23160 0.97907 0.83214 0.98044 1.87813 1.21052 1.28593 1.93459 1.87948 1.73712 1.22857 1.46462 1.22652 0.97890 0.81816 0.98299 0.91658 0.93151 0.92722 0.92588 0.92394 0.91283 0.89913 0.92030 0.90120 0.88826 0.86611 0.84060 0.74920 0.89765 0.92830 0.90981 0.96805 0.93923 0.98530 0.91344 0.87357 0.92819 0.89568 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 8.08 71.98 0.58 -1.16 16 2 C -0.10 -1.35 0.78 -52.09 -0.04 -1.39 16 3 C -0.14 -1.46 8.49 71.98 0.61 -0.85 16 4 C -0.11 -1.26 4.81 30.71 0.15 -1.11 16 5 C -0.15 -1.70 5.05 30.68 0.16 -1.54 16 6 C 0.10 1.89 2.19 30.63 0.07 1.96 16 7 H 0.05 1.00 7.96 -2.39 -0.02 0.98 16 8 C -0.13 -2.07 5.41 29.85 0.16 -1.91 16 9 C 0.51 13.13 7.71 87.65 0.68 13.81 16 10 O -0.58 -20.45 15.42 10.71 0.17 -20.28 16 11 N -0.72 -17.48 5.51 -463.07 -2.55 -20.03 16 12 C 0.14 4.25 5.34 86.38 0.46 4.71 16 13 C 0.08 2.72 2.81 30.69 0.09 2.81 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C 0.12 4.83 6.02 86.35 0.52 5.35 16 16 N -0.61 -30.83 3.05 -697.54 -2.13 -32.95 16 17 C -0.27 -14.44 9.65 84.03 0.81 -13.63 16 18 H 0.07 3.83 7.88 -2.91 -0.02 3.80 16 19 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 20 N -0.94 -55.15 11.14 21.65 0.24 -54.91 16 21 Si 0.97 44.10 29.59 68.60 2.03 46.13 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 C 0.14 6.86 5.44 86.36 0.47 7.33 16 26 C 0.05 1.99 6.99 72.08 0.50 2.49 16 27 O -0.39 -13.95 10.33 -148.98 -1.54 -15.49 16 28 O -0.39 -9.44 9.06 -135.25 -1.23 -10.66 16 29 C 0.07 1.36 5.54 72.01 0.40 1.76 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.05 0.82 6.14 -2.39 -0.01 0.81 16 33 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.08 0.89 6.63 -2.39 -0.02 0.88 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.12 1.59 8.14 -2.39 -0.02 1.58 16 41 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.41 7.98 8.47 -92.71 -0.79 7.19 16 43 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 2.84 7.96 -2.39 -0.02 2.83 16 46 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 48 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 49 H 0.07 3.64 6.14 -2.39 -0.01 3.63 16 50 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 51 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -72.51 408.86 1.11 -71.40 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.09 Total: 20.60 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 6.03 Total: 16.20 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.44 Total: -107.89 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -2.60 Total: -46.44 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -72.51 1.11 -71.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568221604.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.357 kcal (2) G-P(sol) polarization free energy of solvation -72.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds