Wall clock time and date at job start Sat Apr 11 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 110.91241 * 2 1 4 4 C 1.54385 * 110.84610 * 123.58684 * 2 1 3 5 5 O 1.43241 * 107.58742 * 139.54407 * 4 2 1 6 6 C 1.43645 * 109.96981 * 1.71037 * 5 4 2 7 7 H 1.09001 * 110.30918 * 94.58732 * 6 5 4 8 8 C 1.53007 * 110.30613 * 216.65428 * 6 5 4 9 9 C 1.52995 * 109.47161 * 293.54863 * 8 6 5 10 10 C 1.50697 * 109.47076 * 180.02562 * 9 8 6 11 11 O 1.21279 * 119.99956 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00054 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00091 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47450 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.55052 * 305.12723 * 14 13 12 16 16 C 1.53285 * 109.51618 * 184.99809 * 14 13 12 17 17 N 1.47157 * 108.38874 * 187.77112 * 16 14 13 18 18 C 1.36938 * 120.98320 * 230.51759 * 17 16 14 19 19 H 1.07996 * 120.00026 * 26.35561 * 18 17 16 20 20 C 1.38810 * 119.99538 * 206.63974 * 18 17 16 21 21 N 1.31620 * 120.00348 * 16.64335 * 20 18 17 22 22 Si 1.86802 * 119.99593 * 196.65015 * 20 18 17 23 23 H 1.48501 * 109.47231 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47247 * 119.99914 * 22 20 18 25 25 H 1.48504 * 109.46960 * 239.99707 * 22 20 18 26 26 C 1.47152 * 118.03160 * 50.78733 * 17 16 14 27 27 C 1.53712 * 108.16089 * 309.15584 * 26 17 16 28 28 O 1.42962 * 109.51461 * 65.24957 * 14 13 12 29 29 C 1.54940 * 105.14070 * 335.57135 * 6 5 4 30 30 H 1.09000 * 109.46490 * 297.87350 * 1 2 3 31 31 H 1.09004 * 109.46869 * 57.86529 * 1 2 3 32 32 H 1.08998 * 109.47234 * 177.87122 * 1 2 3 33 33 H 1.08999 * 109.47245 * 182.12965 * 3 2 1 34 34 H 1.08999 * 109.46866 * 302.13149 * 3 2 1 35 35 H 1.08999 * 109.47302 * 62.13098 * 3 2 1 36 36 H 1.08997 * 109.82846 * 20.02709 * 4 2 1 37 37 H 1.09002 * 109.90345 * 259.10042 * 4 2 1 38 38 H 1.08995 * 109.46736 * 173.54656 * 8 6 5 39 39 H 1.08999 * 109.46831 * 53.54829 * 8 6 5 40 40 H 1.09006 * 109.47422 * 59.99724 * 9 8 6 41 41 H 1.08999 * 109.47220 * 299.99728 * 9 8 6 42 42 H 0.97002 * 120.00040 * 0.02562 * 12 10 9 43 43 H 1.08996 * 109.47244 * 59.99518 * 13 12 10 44 44 H 1.09007 * 109.47152 * 299.99961 * 13 12 10 45 45 H 1.09006 * 109.68097 * 68.05217 * 16 14 13 46 46 H 1.09003 * 109.71606 * 307.51385 * 16 14 13 47 47 H 0.97004 * 119.99965 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.68295 * 68.93775 * 26 17 16 49 49 H 1.08998 * 109.68027 * 189.49267 * 26 17 16 50 50 H 1.08992 * 109.66099 * 292.57472 * 27 26 17 51 51 H 1.09007 * 109.48064 * 172.39724 * 27 26 17 52 52 H 1.08994 * 111.12664 * 154.36543 * 29 6 5 53 53 H 1.09002 * 111.12342 * 278.52784 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0795 -0.7982 1.2019 5 8 3.2044 -1.5555 0.7407 6 6 3.4464 -1.2784 -0.6478 7 1 4.1948 -0.4928 -0.7521 8 6 3.9049 -2.5468 -1.3703 9 6 5.2764 -2.9685 -0.8395 10 6 5.7283 -4.2175 -1.5515 11 8 5.0226 -4.7209 -2.3997 12 7 6.9162 -4.7755 -1.2451 13 6 7.3553 -5.9900 -1.9369 14 6 8.7263 -6.4124 -1.4053 15 1 9.4254 -5.5813 -1.4981 16 6 9.2425 -7.6084 -2.2133 17 7 10.4657 -8.1114 -1.5680 18 6 11.6090 -8.3219 -2.2917 19 1 11.7876 -7.7582 -3.1953 20 6 12.5355 -9.2642 -1.8669 21 7 12.1899 -10.1743 -0.9811 22 14 14.2731 -9.2404 -2.5523 23 1 14.4061 -8.1268 -3.5257 24 1 15.2404 -9.0465 -1.4424 25 1 14.5539 -10.5294 -3.2341 26 6 10.4221 -8.3871 -0.1232 27 6 9.8501 -7.1480 0.5840 28 8 8.6106 -6.7878 -0.0307 29 6 2.0827 -0.8029 -1.2092 30 1 -0.3632 0.4805 0.9085 31 1 -0.3633 0.5467 -0.8703 32 1 -0.3633 -1.0269 -0.0382 33 1 3.1652 1.4021 -0.0382 34 1 1.6953 1.9637 -0.8703 35 1 1.7571 1.9401 0.9085 36 1 1.3107 -1.4715 1.5811 37 1 2.3926 -0.1134 1.9901 38 1 3.9740 -2.3506 -2.4402 39 1 3.1853 -3.3461 -1.1932 40 1 5.2074 -3.1647 0.2305 41 1 5.9961 -2.1693 -1.0166 42 1 7.4802 -4.3735 -0.5659 43 1 7.4247 -5.7937 -3.0068 44 1 6.6355 -6.7892 -1.7601 45 1 9.4680 -7.2933 -3.2321 46 1 8.4870 -8.3940 -2.2307 47 1 12.8375 -10.8326 -0.6840 48 1 9.7831 -9.2495 0.0669 49 1 11.4290 -8.5879 0.2428 50 1 10.5532 -6.3197 0.4984 51 1 9.6818 -7.3756 1.6367 52 1 2.2185 -0.1598 -2.0787 53 1 1.4386 -1.6497 -1.4459 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568227027.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:07 Heat of formation + Delta-G solvation = -146.698705 kcal Electronic energy + Delta-G solvation = -29709.170568 eV Core-core repulsion = 25579.846976 eV Total energy + Delta-G solvation = -4129.323592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.12423 -40.67291 -39.92383 -36.53121 -35.82332 -35.62539 -34.44013 -33.37205 -32.36465 -30.37614 -29.14860 -28.25288 -27.37728 -26.90153 -25.26151 -24.83056 -23.26834 -21.99266 -21.70711 -21.01294 -20.16087 -18.90156 -18.08119 -17.62780 -17.52740 -17.09225 -16.79966 -16.49997 -16.39454 -16.09510 -15.66882 -15.48461 -15.29139 -14.99854 -14.93540 -14.76721 -14.55998 -14.34829 -14.15844 -14.01177 -13.66859 -13.37951 -13.22229 -13.04331 -12.98705 -12.71992 -12.70158 -12.51358 -12.49010 -12.22734 -12.17711 -12.06225 -12.01887 -11.88298 -11.63250 -11.58345 -11.34796 -11.30301 -10.87600 -10.79399 -10.54925 -10.40116 -10.08705 -8.76818 -7.92263 -5.40177 1.45728 1.47466 1.58290 1.68247 2.19650 2.47978 2.77826 2.89492 3.22937 3.41778 3.48309 3.68903 3.83861 3.86881 3.98771 4.02498 4.07156 4.15355 4.23967 4.32265 4.34252 4.44735 4.48422 4.51846 4.55287 4.61756 4.70657 4.73796 4.74692 4.77548 4.81097 4.84659 4.86674 4.89261 4.98458 5.01389 5.05553 5.07446 5.15188 5.21210 5.23434 5.28742 5.32600 5.44266 5.45513 5.54485 5.60326 6.14603 6.24814 6.32287 6.58483 7.04959 7.27682 7.72765 8.26683 9.13820 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.033794 B = 0.001608 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.349252 B =17406.129369 C =17600.193068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.137 4.137 4 C 0.053 3.947 5 O -0.400 6.400 6 C 0.082 3.918 7 H 0.085 0.915 8 C -0.097 4.097 9 C -0.128 4.128 10 C 0.508 3.492 11 O -0.589 6.589 12 N -0.715 5.715 13 C 0.140 3.860 14 C 0.080 3.920 15 H 0.071 0.929 16 C 0.116 3.884 17 N -0.612 5.612 18 C -0.267 4.267 19 H 0.074 0.926 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.972 3.028 23 H -0.264 1.264 24 H -0.287 1.287 25 H -0.294 1.294 26 C 0.143 3.857 27 C 0.054 3.946 28 O -0.391 6.391 29 C -0.143 4.143 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.119 0.881 42 H 0.414 0.586 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.015 0.985 47 H 0.252 0.748 48 H -0.002 1.002 49 H 0.068 0.932 50 H 0.053 0.947 51 H 0.108 0.892 52 H 0.096 0.904 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.759 25.659 3.738 32.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.024 4.024 5 O -0.320 6.320 6 C 0.025 3.975 7 H 0.103 0.897 8 C -0.136 4.136 9 C -0.167 4.167 10 C 0.297 3.703 11 O -0.470 6.470 12 N -0.367 5.367 13 C 0.015 3.985 14 C 0.021 3.979 15 H 0.089 0.911 16 C -0.011 4.011 17 N -0.337 5.337 18 C -0.396 4.396 19 H 0.091 0.909 20 C -0.246 4.246 21 N -0.583 5.583 22 Si 0.800 3.200 23 H -0.189 1.189 24 H -0.214 1.214 25 H -0.221 1.221 26 C 0.017 3.983 27 C -0.024 4.024 28 O -0.310 6.310 29 C -0.180 4.180 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.137 0.863 42 H 0.251 0.749 43 H 0.105 0.895 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.033 0.967 47 H 0.061 0.939 48 H 0.016 0.984 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.126 0.874 52 H 0.115 0.885 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.200 25.034 3.407 32.347 hybrid contribution 1.371 -0.798 -0.154 1.594 sum -18.829 24.236 3.253 30.863 Atomic orbital electron populations 1.21749 0.92446 1.02164 1.02885 1.22128 0.97232 0.96407 0.94075 1.21819 1.00950 0.93713 1.02889 1.23379 0.88169 0.94217 0.96593 1.88393 1.49960 1.67856 1.25826 1.23062 0.97395 0.96196 0.80808 0.89702 1.21437 0.95377 0.96787 0.99953 1.21624 0.99003 0.94540 1.01553 1.21358 0.80203 0.86399 0.82348 1.90673 1.55257 1.65538 1.35532 1.45914 1.20817 1.27741 1.42189 1.21146 0.93459 0.87111 0.96747 1.22639 0.95826 0.96610 0.82855 0.91083 1.21614 0.88604 0.94329 0.96535 1.44373 1.08170 1.76818 1.04327 1.19610 0.96306 1.15517 1.08183 0.90865 1.25851 1.03375 0.94958 1.00413 1.70201 1.34564 1.17211 1.36291 0.85136 0.79772 0.77365 0.77712 1.18865 1.21373 1.22096 1.21404 0.99763 0.93445 0.83675 1.23237 0.85402 0.96672 0.97060 1.87808 1.31655 1.87554 1.23962 1.23416 0.95667 1.00299 0.98630 0.91547 0.91443 0.92729 0.92548 0.91363 0.91615 0.91600 0.90820 0.89954 0.92681 0.87753 0.86268 0.74919 0.89514 0.92499 0.90924 0.96684 0.93927 0.98418 0.91353 0.92870 0.87423 0.88524 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.51 71.98 0.61 -0.49 16 2 C -0.10 -0.99 0.95 -50.92 -0.05 -1.03 16 3 C -0.14 -1.05 8.46 71.98 0.61 -0.44 16 4 C 0.05 0.71 6.99 72.45 0.51 1.22 16 5 O -0.40 -7.33 10.69 -148.98 -1.59 -8.92 16 6 C 0.08 1.19 3.13 31.26 0.10 1.29 16 7 H 0.09 1.01 7.76 -2.39 -0.02 0.99 16 8 C -0.10 -1.76 4.25 30.59 0.13 -1.63 16 9 C -0.13 -2.25 5.61 29.85 0.17 -2.08 16 10 C 0.51 13.05 7.83 87.66 0.69 13.74 16 11 O -0.59 -19.97 15.98 -3.03 -0.05 -20.02 16 12 N -0.71 -17.63 5.51 -463.06 -2.55 -20.18 16 13 C 0.14 4.14 5.34 86.38 0.46 4.60 16 14 C 0.08 2.69 2.81 30.69 0.09 2.78 16 15 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 16 C 0.12 4.82 6.02 86.35 0.52 5.34 16 17 N -0.61 -30.80 3.04 -696.74 -2.12 -32.92 16 18 C -0.27 -14.48 9.65 84.03 0.81 -13.67 16 19 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 20 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 21 N -0.94 -55.10 11.13 21.65 0.24 -54.86 16 22 Si 0.97 44.09 29.59 68.60 2.03 46.12 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 C 0.14 6.90 5.47 86.49 0.47 7.37 16 27 C 0.05 1.99 7.00 72.22 0.51 2.49 16 28 O -0.39 -14.05 10.33 -148.98 -1.54 -15.59 16 29 C -0.14 -1.67 5.53 32.05 0.18 -1.49 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.05 0.51 8.12 -2.39 -0.02 0.49 16 33 H 0.06 0.48 7.50 -2.39 -0.02 0.46 16 34 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 0.89 7.81 -2.39 -0.02 0.87 16 37 H 0.07 0.87 7.84 -2.39 -0.02 0.85 16 38 H 0.08 1.47 8.10 -2.39 -0.02 1.46 16 39 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 40 H 0.10 1.81 7.91 -2.38 -0.02 1.79 16 41 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.41 8.38 8.47 -92.71 -0.79 7.60 16 43 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.07 2.85 7.96 -2.38 -0.02 2.83 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 48 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 49 H 0.07 3.65 6.14 -2.39 -0.01 3.63 16 50 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 52 H 0.10 0.87 8.03 -2.39 -0.02 0.85 16 53 H 0.07 0.99 7.94 -2.39 -0.02 0.97 16 Total: -1.00 -70.27 415.68 0.72 -69.55 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.09 Total: 21.20 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 6.22 Total: 15.62 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -4.43 Total: -107.96 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -3.18 Total: -44.53 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.27 0.72 -69.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568227027.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.153 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds