Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52990 * 109.47462 * 2 1 4 4 C 1.52996 * 109.47610 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47049 * 300.00366 * 4 3 2 6 6 O 1.42900 * 109.47387 * 179.97438 * 5 4 3 7 7 C 1.42898 * 114.00590 * 149.99696 * 6 5 4 8 8 C 1.50692 * 109.47545 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00206 * 0.02562 * 8 7 6 10 10 N 1.34784 * 120.00062 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99853 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47092 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.67677 * 300.08836 * 12 11 10 14 14 C 1.53296 * 109.68640 * 179.53315 * 12 11 10 15 15 O 1.42965 * 109.22616 * 187.97387 * 14 12 11 16 16 C 1.42955 * 114.16497 * 62.57992 * 15 14 12 17 17 C 1.53297 * 109.22478 * 297.41898 * 16 15 14 18 18 N 1.47149 * 109.68421 * 60.60640 * 12 11 10 19 19 C 1.36942 * 120.98345 * 350.23472 * 18 12 11 20 20 H 1.08002 * 119.99151 * 31.21134 * 19 18 12 21 21 C 1.38808 * 120.00503 * 211.20645 * 19 18 12 22 22 N 1.31619 * 119.99625 * 10.72869 * 21 19 18 23 23 Si 1.86801 * 120.00247 * 190.72829 * 21 19 18 24 24 H 1.48502 * 109.46780 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47179 * 119.99762 * 23 21 19 26 26 H 1.48494 * 109.47075 * 240.00130 * 23 21 19 27 27 C 1.53001 * 109.47282 * 59.99755 * 5 4 3 28 28 C 1.52999 * 109.46886 * 120.00175 * 2 1 3 29 29 H 1.08999 * 109.46965 * 59.99896 * 1 2 3 30 30 H 1.09000 * 109.47294 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47051 * 300.00419 * 1 2 3 32 32 H 1.09005 * 109.47181 * 239.99593 * 2 1 3 33 33 H 1.09005 * 109.47254 * 59.99638 * 3 2 1 34 34 H 1.09007 * 109.47463 * 300.00003 * 3 2 1 35 35 H 1.08998 * 109.47787 * 180.02562 * 4 3 2 36 36 H 1.09005 * 109.46870 * 59.99693 * 4 3 2 37 37 H 1.08995 * 109.47218 * 299.99607 * 5 4 3 38 38 H 1.09006 * 109.46644 * 59.99565 * 7 6 5 39 39 H 1.09005 * 109.47057 * 300.00729 * 7 6 5 40 40 H 0.97000 * 119.99581 * 0.02562 * 10 8 7 41 41 H 1.09010 * 109.47077 * 299.99523 * 11 10 8 42 42 H 1.08994 * 109.47840 * 60.00158 * 11 10 8 43 43 H 1.09004 * 109.50969 * 307.89915 * 14 12 11 44 44 H 1.09004 * 109.51195 * 68.04454 * 14 12 11 45 45 H 1.09003 * 109.51017 * 177.49477 * 16 15 14 46 46 H 1.09003 * 109.51824 * 57.34305 * 16 15 14 47 47 H 1.09001 * 109.67880 * 292.58098 * 17 16 15 48 48 H 1.09002 * 109.68166 * 172.02987 * 17 16 15 49 49 H 0.97008 * 119.99909 * 179.97438 * 22 21 19 50 50 H 1.08995 * 109.47115 * 59.99789 * 27 5 4 51 51 H 1.08999 * 109.47184 * 179.97438 * 27 5 4 52 52 H 1.09005 * 109.47163 * 300.00014 * 28 2 1 53 53 H 1.09007 * 109.47172 * 59.99630 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0795 0.7213 1.2502 6 8 5.5085 0.7208 1.2505 7 6 6.0895 0.7209 2.5561 8 6 7.5917 0.7210 2.4374 9 8 8.1136 0.7213 1.3427 10 7 8.3555 0.7206 3.5480 11 6 9.8159 0.7212 3.4326 12 6 10.4379 0.7200 4.8304 13 1 10.1167 1.6073 5.3759 14 6 11.9665 0.7088 4.7154 15 8 12.5349 0.5205 6.0137 16 6 12.1963 -0.7264 6.6254 17 6 10.6795 -0.7888 6.8383 18 7 10.0185 -0.4881 5.5585 19 6 9.0415 -1.3080 5.0600 20 1 8.9160 -1.4111 3.9923 21 6 8.2127 -2.0068 5.9269 22 7 8.2197 -1.7267 7.2130 23 14 7.0873 -3.3444 5.2684 24 1 7.2679 -3.4643 3.7993 25 1 7.4245 -4.6378 5.9153 26 1 5.6753 -2.9948 5.5672 27 6 3.5695 -0.7212 1.2501 28 6 2.0400 -0.7213 1.2492 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 3.9334 2.4700 0.0011 36 1 3.9337 0.9284 -0.8891 37 1 3.7159 1.2352 2.1399 38 1 5.7673 -0.1688 3.0972 39 1 5.7680 1.6112 3.0967 40 1 7.9381 0.7199 4.4236 41 1 10.1380 -0.1685 2.8913 42 1 10.1374 1.6116 2.8924 43 1 12.2764 -0.1056 4.0606 44 1 12.3075 1.6584 4.3029 45 1 12.7027 -0.8094 7.5871 46 1 12.5070 -1.5461 5.9776 47 1 10.3833 -0.0533 7.5863 48 1 10.3964 -1.7871 7.1722 49 1 7.6402 -2.2147 7.8188 50 1 3.9331 -1.2351 0.3604 51 1 3.9328 -1.2351 2.1401 52 1 1.6766 -0.2075 2.1393 53 1 1.6765 -1.7490 1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570076853.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -138.922153 kcal Electronic energy + Delta-G solvation = -31209.794977 eV Core-core repulsion = 27080.808602 eV Total energy + Delta-G solvation = -4128.986375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.01370 -40.28650 -39.73632 -37.72583 -36.88637 -35.30007 -33.37216 -32.73849 -32.17133 -31.78224 -29.53763 -28.84794 -26.85680 -26.07458 -25.23089 -23.68768 -23.32217 -22.19453 -21.57509 -21.30068 -20.71533 -18.85361 -18.15096 -17.76813 -17.57257 -17.12567 -16.85637 -16.52389 -16.25836 -16.04269 -15.85558 -15.41957 -15.30757 -15.18376 -15.05602 -14.95586 -14.68719 -14.28709 -14.05039 -13.85750 -13.57768 -13.43161 -13.22218 -13.10231 -12.92664 -12.84711 -12.74927 -12.51328 -12.44820 -12.13432 -12.09023 -12.00395 -11.86466 -11.76106 -11.57280 -11.32257 -11.30405 -11.21361 -10.91595 -10.61551 -10.55974 -10.45543 -9.88760 -8.62376 -7.87815 -5.38803 1.37268 1.45426 1.51907 1.63118 1.92139 2.43320 2.95349 3.06580 3.28295 3.44012 3.69425 3.70866 3.84678 3.94756 4.03387 4.11447 4.13802 4.19592 4.22679 4.28244 4.29950 4.34210 4.47127 4.47844 4.52665 4.58320 4.60084 4.64042 4.66351 4.74994 4.79799 4.89154 4.91377 4.98679 5.00748 5.09278 5.11578 5.13855 5.20855 5.24458 5.30602 5.38666 5.40893 5.53329 5.55811 5.63672 5.69153 6.13572 6.29615 6.37356 6.67119 7.10433 7.29787 7.75874 8.32283 9.16526 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.002831 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.448027 B = 9889.174441 C =11294.938536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.104 4.104 4 C -0.112 4.112 5 C 0.082 3.918 6 O -0.384 6.384 7 C 0.049 3.951 8 C 0.507 3.493 9 O -0.581 6.581 10 N -0.692 5.692 11 C 0.143 3.857 12 C 0.127 3.873 13 H 0.041 0.959 14 C 0.057 3.943 15 O -0.397 6.397 16 C 0.046 3.954 17 C 0.149 3.851 18 N -0.605 5.605 19 C -0.242 4.242 20 H 0.067 0.933 21 C -0.028 4.028 22 N -0.924 5.924 23 Si 0.939 3.061 24 H -0.281 1.281 25 H -0.294 1.294 26 H -0.283 1.283 27 C -0.145 4.145 28 C -0.107 4.107 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.414 0.586 41 H 0.048 0.952 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.042 0.958 47 H 0.009 0.991 48 H 0.066 0.934 49 H 0.251 0.749 50 H 0.058 0.942 51 H 0.052 0.948 52 H 0.070 0.930 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.519 6.359 -8.591 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.141 4.141 4 C -0.150 4.150 5 C 0.025 3.975 6 O -0.303 6.303 7 C -0.031 4.031 8 C 0.294 3.706 9 O -0.462 6.462 10 N -0.344 5.344 11 C 0.019 3.981 12 C 0.021 3.979 13 H 0.059 0.941 14 C -0.022 4.022 15 O -0.316 6.316 16 C -0.032 4.032 17 C 0.023 3.977 18 N -0.331 5.331 19 C -0.372 4.372 20 H 0.085 0.915 21 C -0.225 4.225 22 N -0.570 5.570 23 Si 0.769 3.231 24 H -0.206 1.206 25 H -0.221 1.221 26 H -0.209 1.209 27 C -0.183 4.183 28 C -0.145 4.145 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.251 0.749 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.136 0.864 45 H 0.122 0.878 46 H 0.061 0.939 47 H 0.027 0.973 48 H 0.084 0.916 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.089 0.911 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.024 6.425 -9.318 15.119 hybrid contribution -0.873 -1.458 0.617 1.808 sum -10.897 4.967 -8.700 14.802 Atomic orbital electron populations 1.21792 0.93916 1.02034 1.02342 1.21183 0.96399 0.95954 0.97810 1.21548 0.92659 0.96635 1.03295 1.21575 0.96652 1.00385 0.96395 1.22416 0.78942 0.96033 1.00098 1.87995 1.21065 1.95302 1.25918 1.22231 0.90116 1.03917 0.86810 1.20627 0.89762 0.76180 0.84078 1.90634 1.75653 1.51839 1.28044 1.45903 1.06951 1.72552 1.09028 1.21112 0.79677 1.01077 0.96213 1.21553 0.94586 0.90202 0.91600 0.94136 1.22992 0.92214 1.02463 0.84483 1.87806 1.72474 1.38770 1.32535 1.23221 0.96760 0.85274 0.97950 1.21249 0.89251 1.00037 0.87122 1.44295 1.42458 1.23992 1.22374 1.19306 1.07216 1.19239 0.91437 0.91533 1.25558 0.99034 1.01981 0.95942 1.70096 1.41339 1.42643 1.02897 0.85642 0.79627 0.80230 0.77638 1.20633 1.22139 1.20932 1.22055 0.97459 0.96926 1.01861 1.21540 0.92879 1.01240 0.98841 0.91907 0.92571 0.92236 0.91638 0.90925 0.90088 0.91173 0.92221 0.90652 0.90121 0.87619 0.74866 0.93389 0.90123 0.93384 0.86388 0.87758 0.93943 0.97326 0.91593 0.93989 0.92326 0.92917 0.91111 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.19 71.98 0.66 -1.05 16 2 C -0.09 -1.44 2.72 -10.80 -0.03 -1.47 16 3 C -0.10 -1.54 5.20 30.59 0.16 -1.38 16 4 C -0.11 -2.29 5.57 30.59 0.17 -2.12 16 5 C 0.08 1.98 2.61 30.59 0.08 2.06 16 6 O -0.38 -12.45 9.52 -129.94 -1.24 -13.69 16 7 C 0.05 1.51 6.23 71.23 0.44 1.95 16 8 C 0.51 19.20 7.91 87.65 0.69 19.89 16 9 O -0.58 -26.19 16.50 16.02 0.26 -25.92 16 10 N -0.69 -25.43 3.77 -463.08 -1.75 -27.18 16 11 C 0.14 5.16 4.45 86.38 0.38 5.54 16 12 C 0.13 4.72 3.21 44.97 0.14 4.87 16 13 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 14 C 0.06 1.86 6.29 72.08 0.45 2.32 16 15 O -0.40 -14.41 10.74 -148.98 -1.60 -16.01 16 16 C 0.05 1.67 6.98 72.08 0.50 2.18 16 17 C 0.15 6.66 5.38 86.35 0.46 7.12 16 18 N -0.61 -27.18 3.03 -673.72 -2.04 -29.22 16 19 C -0.24 -11.75 7.06 84.03 0.59 -11.16 16 20 H 0.07 3.34 5.81 -2.91 -0.02 3.32 16 21 C -0.03 -1.43 5.06 84.86 0.43 -1.00 16 22 N -0.92 -49.23 11.13 21.65 0.24 -48.99 16 23 Si 0.94 42.12 29.57 68.60 2.03 44.14 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 27 C -0.15 -3.41 5.54 30.58 0.17 -3.24 16 28 C -0.11 -1.90 5.20 30.58 0.16 -1.74 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 37 H 0.08 1.57 7.79 -2.39 -0.02 1.55 16 38 H 0.08 2.46 7.87 -2.38 -0.02 2.44 16 39 H 0.11 2.57 8.09 -2.38 -0.02 2.56 16 40 H 0.41 15.54 7.32 -92.71 -0.68 14.86 16 41 H 0.05 1.92 7.57 -2.38 -0.02 1.91 16 42 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.07 3.30 6.33 -2.39 -0.02 3.28 16 49 H 0.25 13.12 8.31 -92.70 -0.77 12.35 16 50 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.05 1.36 7.87 -2.39 -0.02 1.34 16 52 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 53 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -63.30 407.67 1.58 -61.72 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.20 Total: 32.37 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 5.48 Total: 22.78 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -3.55 Total: -105.39 kcal Atomic # 8 Polarization: -53.05 SS G_CDS: -2.57 Total: -55.62 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -63.30 1.58 -61.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570076853.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.204 kcal (2) G-P(sol) polarization free energy of solvation -63.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds