Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00056 * 2 1 4 4 H 1.48502 * 109.47089 * 270.00545 * 3 2 1 5 5 H 1.48507 * 109.47081 * 30.00349 * 3 2 1 6 6 H 1.48495 * 109.47345 * 150.00166 * 3 2 1 7 7 C 1.37876 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00367 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99686 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47267 * 184.67789 * 9 7 2 11 11 C 1.46898 * 111.00172 * 198.10324 * 10 9 7 12 12 C 1.52995 * 109.47398 * 66.04827 * 11 10 9 13 13 N 1.46898 * 109.47398 * 179.97438 * 12 11 10 14 14 C 1.47010 * 110.99895 * 293.63732 * 13 12 11 15 15 C 1.53098 * 109.25999 * 177.60702 * 14 13 12 16 16 O 1.43019 * 109.25785 * 56.84366 * 15 14 13 17 17 C 1.43014 * 113.73919 * 301.33169 * 16 15 14 18 18 C 1.47007 * 111.00049 * 169.99672 * 13 12 11 19 19 C 1.46905 * 110.99550 * 74.14499 * 10 9 7 20 20 C 1.53007 * 109.46838 * 199.46258 * 19 10 9 21 21 C 1.52993 * 109.46790 * 175.35556 * 20 19 10 22 22 C 1.50707 * 112.90734 * 54.71971 * 21 20 19 23 23 O 1.20823 * 120.00397 * 125.02581 * 22 21 20 24 24 O 1.34230 * 119.99871 * 305.02228 * 22 21 20 25 25 C 1.53781 * 113.61561 * 185.96788 * 21 20 19 26 26 C 1.53770 * 87.08333 * 89.11671 * 25 21 20 27 27 C 1.53782 * 113.61635 * 283.46685 * 21 20 19 28 28 H 0.97003 * 120.00556 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46997 * 64.68354 * 9 7 2 30 30 H 1.08998 * 109.47306 * 304.68189 * 9 7 2 31 31 H 1.08997 * 109.46777 * 186.05073 * 11 10 9 32 32 H 1.08996 * 109.46924 * 306.04363 * 11 10 9 33 33 H 1.09005 * 109.46839 * 300.00297 * 12 11 10 34 34 H 1.09002 * 109.47098 * 59.99605 * 12 11 10 35 35 H 1.09008 * 109.50497 * 297.53745 * 14 13 12 36 36 H 1.08996 * 109.50768 * 57.66734 * 14 13 12 37 37 H 1.09000 * 109.50472 * 296.91412 * 15 14 13 38 38 H 1.08995 * 109.54398 * 176.79902 * 15 14 13 39 39 H 1.09000 * 109.50535 * 298.73923 * 17 16 15 40 40 H 1.09002 * 109.54217 * 178.62510 * 17 16 15 41 41 H 1.08996 * 109.51049 * 302.32797 * 18 13 12 42 42 H 1.09000 * 109.50646 * 62.41941 * 18 13 12 43 43 H 1.08996 * 109.46466 * 79.46952 * 19 10 9 44 44 H 1.08999 * 109.47403 * 319.46574 * 19 10 9 45 45 H 1.09001 * 109.46489 * 55.35791 * 20 19 10 46 46 H 1.09001 * 109.47108 * 295.35810 * 20 19 10 47 47 H 0.96696 * 117.00393 * 180.02562 * 24 22 21 48 48 H 1.09007 * 113.61207 * 334.56925 * 25 21 20 49 49 H 1.08997 * 113.61659 * 203.66703 * 25 21 20 50 50 H 1.09003 * 113.61769 * 139.98374 * 26 25 21 51 51 H 1.09006 * 113.61566 * 270.88840 * 26 25 21 52 52 H 1.08999 * 113.61424 * 156.33864 * 27 21 20 53 53 H 1.08995 * 113.69318 * 25.43980 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0012 -2.5744 -0.1146 11 6 5.4058 -2.6708 0.3045 12 6 5.5137 -2.3683 1.8004 13 7 6.9182 -2.4653 2.2196 14 6 7.4054 -3.8482 2.1132 15 6 8.8856 -3.8935 2.5015 16 8 9.0437 -3.3636 3.8205 17 6 8.5801 -2.0179 3.9597 18 6 7.0967 -1.9537 3.5862 19 6 3.8229 -3.0856 -1.4802 20 6 3.8741 -4.6147 -1.4631 21 6 3.5735 -5.1507 -2.8642 22 6 4.4788 -4.5714 -3.9206 23 8 5.1171 -5.3049 -4.6378 24 8 4.5760 -3.2404 -4.0648 25 6 3.4567 -6.6828 -2.9257 26 6 1.9613 -6.5028 -2.6158 27 6 2.0821 -5.1007 -3.2360 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.7548 0.9278 30 1 3.8745 -0.6091 -0.8462 31 1 5.7746 -3.6779 0.1100 32 1 6.0023 -1.9510 -0.2558 33 1 5.1448 -1.3611 1.9949 34 1 4.9170 -3.0882 2.3607 35 1 6.8333 -4.4884 2.7849 36 1 7.2873 -4.1979 1.0877 37 1 9.4650 -3.2961 1.7975 38 1 9.2371 -4.9250 2.4791 39 1 9.1505 -1.3661 3.2980 40 1 8.7099 -1.6925 4.9919 41 1 6.7532 -0.9205 3.6358 42 1 6.5190 -2.5631 4.2813 43 1 4.6192 -2.7025 -2.1183 44 1 2.8579 -2.7586 -1.8675 45 1 3.1317 -4.9952 -0.7615 46 1 4.8670 -4.9415 -1.1543 47 1 5.1691 -2.9158 -4.7561 48 1 4.0076 -7.1947 -2.1366 49 1 3.6508 -7.0961 -3.9154 50 1 1.3145 -7.1752 -3.1793 51 1 1.7347 -6.4905 -1.5497 52 1 1.9005 -5.0815 -4.3106 53 1 1.5221 -4.3357 -2.6983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609932.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -125.497307 kcal Electronic energy + Delta-G solvation = -31542.340799 eV Core-core repulsion = 27413.936568 eV Total energy + Delta-G solvation = -4128.404230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98785 -40.58731 -39.48013 -38.63869 -37.12232 -36.54291 -34.65036 -32.43929 -32.17259 -30.96678 -29.13886 -27.43899 -26.73477 -26.21849 -25.01681 -24.03459 -23.34938 -22.80332 -21.39883 -21.13332 -19.68265 -19.06662 -18.91069 -17.81279 -17.58730 -17.14113 -16.95941 -16.61897 -16.33083 -16.10389 -15.97606 -15.87537 -15.79144 -15.25818 -15.07658 -15.01193 -14.63497 -14.39813 -14.32290 -13.90222 -13.39083 -13.29997 -13.26253 -13.18162 -12.98806 -12.77395 -12.66126 -12.53554 -12.44070 -12.32282 -12.30638 -12.09954 -11.82167 -11.80094 -11.56685 -11.48584 -11.40751 -11.32106 -11.15538 -11.00966 -10.72726 -10.65582 -9.43316 -8.97167 -8.24048 -6.24742 1.14673 1.34224 1.35870 1.45716 2.15979 2.35913 2.60229 2.95175 3.09599 3.20286 3.43944 3.52701 3.82996 3.85631 3.86417 3.95377 4.02663 4.18129 4.21479 4.24364 4.31275 4.36964 4.39575 4.45243 4.55284 4.60235 4.64219 4.71298 4.72939 4.79444 4.82725 4.82833 4.85562 4.90100 4.95425 4.99297 5.01789 5.04427 5.07156 5.08468 5.15731 5.29498 5.37191 5.48402 5.57767 5.61846 5.87362 5.96209 6.08700 6.17432 6.43500 6.69728 6.81934 6.99617 7.38235 8.92409 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006523 B = 0.004461 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4291.312662 B = 6275.685926 C = 9460.621731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.936 3.064 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.252 1.252 7 C -0.502 4.502 8 H 0.042 0.958 9 C 0.173 3.827 10 N -0.538 5.538 11 C 0.067 3.933 12 C 0.068 3.932 13 N -0.543 5.543 14 C 0.015 3.985 15 C 0.065 3.935 16 O -0.403 6.403 17 C 0.068 3.932 18 C 0.015 3.985 19 C 0.066 3.934 20 C -0.075 4.075 21 C -0.083 4.083 22 C 0.499 3.501 23 O -0.545 6.545 24 O -0.507 6.507 25 C -0.105 4.105 26 C -0.129 4.129 27 C -0.127 4.127 28 H 0.264 0.736 29 H 0.029 0.971 30 H -0.018 1.018 31 H 0.083 0.917 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.418 0.582 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.090 0.910 51 H 0.089 0.911 52 H 0.088 0.912 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.397 -9.879 -0.644 18.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.185 4.185 3 Si 0.760 3.240 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.176 1.176 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.046 3.954 10 N -0.263 5.263 11 C -0.061 4.061 12 C -0.060 4.060 13 N -0.269 5.269 14 C -0.113 4.113 15 C -0.012 4.012 16 O -0.322 6.322 17 C -0.009 4.009 18 C -0.113 4.113 19 C -0.061 4.061 20 C -0.113 4.113 21 C -0.084 4.084 22 C 0.344 3.656 23 O -0.436 6.436 24 O -0.320 6.320 25 C -0.143 4.143 26 C -0.166 4.166 27 C -0.165 4.165 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.000 1.000 31 H 0.101 0.899 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.134 0.866 41 H 0.106 0.894 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.093 0.907 47 H 0.279 0.721 48 H 0.108 0.892 49 H 0.110 0.890 50 H 0.109 0.891 51 H 0.108 0.892 52 H 0.106 0.894 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.250 -10.192 -0.373 18.346 hybrid contribution -0.170 1.588 -0.822 1.796 sum 15.080 -8.604 -1.195 17.403 Atomic orbital electron populations 1.70034 1.07902 1.27769 1.53052 1.25708 0.95429 1.02545 0.94828 0.85886 0.79543 0.79625 0.78925 1.19642 1.20929 1.17579 1.21212 0.90910 0.93090 1.48865 0.93995 1.19954 0.94293 0.86247 0.94905 1.61787 1.17527 1.22257 1.24700 1.21985 0.88593 1.00967 0.94583 1.21962 0.87322 1.00950 0.95764 1.62186 1.19348 1.21301 1.24019 1.22895 0.97107 0.88730 1.02587 1.22784 0.93920 1.00685 0.83782 1.87944 1.83566 1.29576 1.31150 1.22746 0.91722 0.83402 1.03046 1.22838 0.98553 1.01335 0.88555 1.22058 1.01337 0.94516 0.88212 1.21239 1.02790 0.94769 0.92468 1.22075 0.94964 0.98246 0.93149 1.23553 0.79204 0.80071 0.82806 1.90652 1.45181 1.61524 1.46257 1.84763 1.65240 1.24235 1.57754 1.22920 0.97175 0.90559 1.03599 1.22807 0.96292 0.95539 1.01968 1.22991 0.92182 0.99620 1.01698 0.92657 0.95304 1.00034 0.89893 0.95500 0.91931 0.94792 0.94517 0.88785 0.91978 0.86535 0.91933 0.86597 0.89404 0.94558 0.93502 0.92538 0.89782 0.90718 0.72052 0.89218 0.89041 0.89146 0.89245 0.89394 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 2 C 0.01 0.69 5.47 84.65 0.46 1.15 16 3 Si 0.94 43.61 27.38 68.60 1.88 45.49 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 6 H -0.25 -10.98 6.68 99.48 0.66 -10.31 16 7 C -0.50 -28.07 8.97 25.60 0.23 -27.84 16 8 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 9 C 0.17 8.01 3.66 85.56 0.31 8.32 16 10 N -0.54 -20.75 4.37 -900.78 -3.93 -24.69 16 11 C 0.07 2.10 4.72 86.30 0.41 2.51 16 12 C 0.07 2.09 4.92 86.30 0.42 2.51 16 13 N -0.54 -13.86 4.73 -895.24 -4.23 -18.09 16 14 C 0.01 0.32 5.44 86.31 0.47 0.79 16 15 C 0.06 1.20 7.01 72.01 0.50 1.71 16 16 O -0.40 -8.86 10.83 -148.98 -1.61 -10.47 16 17 C 0.07 1.29 7.01 72.02 0.50 1.79 16 18 C 0.02 0.35 5.64 86.32 0.49 0.84 16 19 C 0.07 2.33 3.95 86.30 0.34 2.67 16 20 C -0.07 -2.07 4.63 30.59 0.14 -1.93 16 21 C -0.08 -2.08 0.95 -52.40 -0.05 -2.13 16 22 C 0.50 13.42 7.26 71.24 0.52 13.94 16 23 O -0.55 -16.51 16.72 21.97 0.37 -16.14 16 24 O -0.51 -12.55 10.42 -51.41 -0.54 -13.09 16 25 C -0.11 -2.17 6.95 31.12 0.22 -1.95 16 26 C -0.13 -2.60 7.73 31.12 0.24 -2.36 16 27 C -0.13 -3.21 7.06 31.12 0.22 -2.99 16 28 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 29 H 0.03 1.34 5.28 -2.39 -0.01 1.33 16 30 H -0.02 -0.85 7.19 -2.39 -0.02 -0.87 16 31 H 0.08 2.25 5.07 -2.39 -0.01 2.23 16 32 H 0.03 0.87 8.12 -2.39 -0.02 0.86 16 33 H 0.06 2.16 6.16 -2.38 -0.01 2.15 16 34 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.09 1.87 6.38 -2.39 -0.02 1.85 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.95 8.09 -2.39 -0.02 1.93 16 42 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.05 1.58 5.68 -2.39 -0.01 1.57 16 44 H 0.06 2.38 6.51 -2.39 -0.02 2.36 16 45 H 0.08 2.43 7.31 -2.39 -0.02 2.41 16 46 H 0.07 1.84 6.93 -2.39 -0.02 1.82 16 47 H 0.42 6.53 9.10 -74.06 -0.67 5.86 16 48 H 0.09 1.62 8.10 -2.38 -0.02 1.60 16 49 H 0.09 1.93 7.52 -2.39 -0.02 1.91 16 50 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.09 1.83 7.61 -2.38 -0.02 1.81 16 52 H 0.09 2.07 8.09 -2.39 -0.02 2.05 16 53 H 0.07 2.04 7.50 -2.39 -0.02 2.02 16 Total: -1.00 -70.07 402.79 -2.15 -72.22 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.19 Total: 25.56 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.43 Total: -2.98 kcal Atomic # 7 Polarization: -92.72 SS G_CDS: -7.87 Total: -100.58 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.78 Total: -39.70 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Total: -70.07 -2.15 -72.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609932.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.279 kcal (2) G-P(sol) polarization free energy of solvation -70.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds