Wall clock time and date at job start Sat Apr 11 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46888 * 111.00335 * 2 1 4 4 C 1.46901 * 110.99661 * 123.96224 * 2 1 3 5 5 C 1.52992 * 109.47859 * 66.04215 * 4 2 1 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47212 * 179.97438 * 6 5 4 8 8 C 1.46496 * 119.99619 * 89.99960 * 7 6 5 9 9 C 1.50707 * 109.47188 * 90.00204 * 8 7 6 10 10 H 1.07994 * 119.99863 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99908 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00198 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99704 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.46968 * 60.00099 * 13 11 9 15 15 H 1.48498 * 109.46970 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47017 * 300.00000 * 13 11 9 17 17 C 1.34774 * 120.00261 * 270.00136 * 7 6 5 18 18 O 1.21619 * 119.99643 * 359.97438 * 17 7 6 19 19 C 1.47095 * 119.99996 * 180.02562 * 17 7 6 20 20 C 1.33000 * 119.99828 * 179.97438 * 19 17 7 21 21 C 1.50697 * 119.99887 * 180.02562 * 20 19 17 22 22 H 1.08994 * 110.62055 * 1.61961 * 21 20 19 23 23 C 1.54908 * 110.69553 * 124.88750 * 21 20 19 24 24 O 1.44787 * 101.72074 * 153.95515 * 23 21 20 25 25 C 1.43752 * 104.81586 * 323.89552 * 24 23 21 26 26 C 1.52998 * 109.63305 * 264.43282 * 25 24 23 27 27 C 1.53005 * 109.63027 * 144.19196 * 25 24 23 28 28 O 1.43365 * 108.78891 * 24.31490 * 25 24 23 29 29 H 1.09000 * 109.47279 * 296.04398 * 1 2 3 30 30 H 1.09005 * 109.47207 * 56.04222 * 1 2 3 31 31 H 1.09004 * 109.47798 * 176.04181 * 1 2 3 32 32 H 1.09006 * 109.47685 * 183.95508 * 3 2 1 33 33 H 1.08998 * 109.47356 * 303.95914 * 3 2 1 34 34 H 1.09000 * 109.47509 * 63.95686 * 3 2 1 35 35 H 1.09002 * 109.46980 * 306.03874 * 4 2 1 36 36 H 1.09001 * 109.46628 * 186.04295 * 4 2 1 37 37 H 1.09002 * 109.47103 * 59.99734 * 5 4 2 38 38 H 1.08998 * 109.46862 * 300.00546 * 5 4 2 39 39 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 40 40 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 41 41 H 1.09006 * 109.47349 * 209.99918 * 8 7 6 42 42 H 1.09003 * 109.47665 * 330.00083 * 8 7 6 43 43 H 0.97004 * 120.00297 * 179.97438 * 12 11 9 44 44 H 1.07998 * 120.00170 * 359.97438 * 19 17 7 45 45 H 1.07998 * 120.00001 * 359.97438 * 20 19 17 46 46 H 1.09002 * 110.98162 * 272.06278 * 23 21 20 47 47 H 1.09000 * 110.98259 * 35.85267 * 23 21 20 48 48 H 1.08995 * 109.47112 * 179.36411 * 26 25 24 49 49 H 1.09005 * 109.46819 * 299.36509 * 26 25 24 50 50 H 1.08994 * 109.47212 * 59.36357 * 26 25 24 51 51 H 1.09003 * 109.46658 * 300.63691 * 27 25 24 52 52 H 1.08998 * 109.47509 * 60.63533 * 27 25 24 53 53 H 1.08997 * 109.46993 * 180.63872 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9953 -0.7662 1.1375 5 6 1.6313 -2.2427 0.9703 6 6 2.1801 -3.0407 2.1547 7 7 1.8310 -4.4545 1.9948 8 6 2.7384 -5.3569 1.2817 9 6 3.7099 -5.9676 2.2588 10 1 3.6569 -5.7090 3.3060 11 6 4.6663 -6.8564 1.8156 12 7 4.7305 -7.1716 0.5405 13 14 5.8708 -7.6128 3.0266 14 1 5.1227 -8.3754 4.0579 15 1 6.7898 -8.5285 2.3040 16 1 6.6571 -6.5361 3.6805 17 6 0.6750 -4.9250 2.5036 18 8 -0.0780 -4.1758 3.0959 19 6 0.3248 -6.3446 2.3435 20 6 -0.8157 -6.8089 2.8460 21 6 -1.1742 -8.2635 2.6825 22 1 -0.3825 -8.7972 2.1569 23 6 -1.4587 -8.9152 4.0587 24 8 -2.3492 -9.9968 3.6935 25 6 -3.1518 -9.4672 2.6249 26 6 -4.4688 -8.9302 3.1887 27 6 -3.4444 -10.5707 1.6062 28 8 -2.4306 -8.4037 1.9891 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5741 -0.8524 31 1 -0.3635 -1.0252 -0.0709 32 1 3.0828 1.3431 -0.0709 33 1 1.5898 1.9163 -0.8524 34 1 1.7045 1.8723 0.9233 35 1 1.5610 -0.3874 2.0628 36 1 3.0796 -0.6613 1.1755 37 1 2.0656 -2.6214 0.0450 38 1 0.5471 -2.3475 0.9321 39 1 1.7462 -2.6621 3.0802 40 1 3.2644 -2.9358 2.1922 41 1 2.1616 -6.1471 0.8010 42 1 3.2879 -4.7966 0.5252 43 1 5.4036 -7.7966 0.2286 44 1 0.9938 -7.0099 1.8179 45 1 -1.4844 -6.1437 3.3720 46 1 -0.5417 -9.2989 4.5059 47 1 -1.9533 -8.2121 4.7288 48 1 -5.0703 -8.5191 2.3780 49 1 -5.0148 -9.7408 3.6714 50 1 -4.2596 -8.1481 3.9184 51 1 -2.5055 -10.9568 1.2092 52 1 -3.9926 -11.3779 2.0922 53 1 -4.0434 -10.1637 0.7916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597621204.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:24 Heat of formation + Delta-G solvation = -124.218768 kcal Electronic energy + Delta-G solvation = -30293.092331 eV Core-core repulsion = 26164.743542 eV Total energy + Delta-G solvation = -4128.348789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.71108 -40.85073 -38.68214 -36.96150 -36.34947 -35.35391 -34.73424 -33.36493 -32.67232 -29.42863 -29.25034 -28.50791 -28.35910 -27.33600 -25.31237 -24.79179 -23.70166 -22.17156 -21.92845 -21.58280 -19.90549 -18.76751 -18.37137 -18.12449 -17.32690 -17.25265 -16.60887 -16.45533 -16.30259 -16.14625 -15.95371 -15.67225 -15.40047 -15.02170 -14.90181 -14.49971 -14.43184 -14.26925 -13.93449 -13.70536 -13.54792 -13.45510 -13.27467 -13.20987 -13.09987 -13.03003 -12.92580 -12.84891 -12.67332 -12.63180 -12.48850 -12.46338 -12.43278 -12.35814 -11.95876 -11.72038 -11.53455 -11.34858 -10.92820 -10.72229 -10.61109 -10.53342 -9.49091 -9.33436 -8.19411 -6.34567 0.21501 1.44173 1.45045 1.52764 2.14929 2.21939 2.45113 2.49638 2.94259 3.04696 3.11179 3.37811 3.58379 3.75248 3.86584 3.93759 3.94092 4.07665 4.16128 4.18572 4.21765 4.37130 4.39822 4.43615 4.49404 4.50745 4.60137 4.65361 4.67133 4.71858 4.73458 4.74280 4.77417 4.78414 4.88952 4.92475 4.97764 5.00594 5.07551 5.13328 5.17333 5.22443 5.25415 5.28008 5.37444 5.66084 5.82836 6.02975 6.04698 6.05246 6.10817 6.51689 6.79339 7.24131 7.38975 8.86002 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006940 B = 0.003314 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4033.854143 B = 8446.015781 C =11714.947423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.114 4.114 6 C 0.121 3.879 7 N -0.589 5.589 8 C 0.252 3.748 9 C -0.547 4.547 10 H 0.054 0.946 11 C 0.025 3.975 12 N -0.919 5.919 13 Si 0.955 3.045 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.540 3.460 18 O -0.594 6.594 19 C -0.175 4.175 20 C -0.074 4.074 21 C 0.081 3.919 22 H 0.094 0.906 23 C 0.029 3.971 24 O -0.382 6.382 25 C 0.233 3.767 26 C -0.168 4.168 27 C -0.153 4.153 28 O -0.385 6.385 29 H 0.027 0.973 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.023 0.977 43 H 0.268 0.732 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.059 0.941 51 H 0.058 0.942 52 H 0.091 0.909 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.367 2.701 2.449 12.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.289 5.289 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.153 4.153 6 C -0.003 4.003 7 N -0.317 5.317 8 C 0.131 3.869 9 C -0.585 4.585 10 H 0.072 0.928 11 C -0.176 4.176 12 N -0.558 5.558 13 Si 0.780 3.220 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.198 1.198 17 C 0.331 3.669 18 O -0.479 6.479 19 C -0.196 4.196 20 C -0.094 4.094 21 C 0.023 3.977 22 H 0.112 0.888 23 C -0.047 4.047 24 O -0.302 6.302 25 C 0.157 3.843 26 C -0.225 4.225 27 C -0.210 4.210 28 O -0.307 6.307 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.077 0.923 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.109 0.891 48 H 0.100 0.900 49 H 0.109 0.891 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.109 0.891 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.536 2.667 2.068 12.982 hybrid contribution 0.814 0.006 1.060 1.337 sum -11.722 2.673 3.128 12.423 Atomic orbital electron populations 1.22422 0.87063 1.02020 1.00975 1.61946 1.08634 1.15033 1.43304 1.22426 1.01139 0.87586 1.01109 1.21961 1.00658 0.92162 0.91441 1.21755 1.00401 0.94887 0.98248 1.21342 1.00532 0.79961 0.98438 1.48111 1.19413 1.10273 1.53924 1.19148 0.87831 0.88324 0.91576 1.21618 1.15867 1.26338 0.94704 0.92820 1.25619 0.98768 0.96529 0.96681 1.70007 1.35754 1.34845 1.15155 0.85650 0.78828 0.78418 0.79071 1.19487 1.20771 1.19764 1.18707 0.81061 0.88823 0.78329 1.90652 1.51707 1.60117 1.45409 1.22863 0.99248 0.94836 1.02669 1.23312 0.95365 0.95220 0.95507 1.22762 0.87741 0.93360 0.93793 0.88818 1.24444 0.95726 0.89307 0.95274 1.89227 1.51686 1.36618 1.52714 1.23803 0.89685 0.85946 0.84831 1.22378 0.95409 1.02512 1.02240 1.22102 1.03091 0.97444 0.98360 1.88948 1.29981 1.55316 1.56444 0.95444 0.89982 0.92496 0.90859 0.90220 0.95227 0.94455 0.89791 0.92241 0.93104 0.91183 0.90126 0.95215 0.95916 0.92278 0.84975 0.85320 0.85437 0.89116 0.89968 0.89057 0.92235 0.92257 0.89066 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.32 127.69 1.19 1.73 16 2 N -0.56 -14.24 5.02 -948.88 -4.76 -19.00 16 3 C 0.03 0.48 9.57 127.69 1.22 1.70 16 4 C 0.07 1.78 4.96 86.30 0.43 2.21 16 5 C -0.11 -3.75 5.46 30.59 0.17 -3.58 16 6 C 0.12 4.46 5.41 86.38 0.47 4.93 16 7 N -0.59 -25.18 2.46 -830.42 -2.04 -27.22 16 8 C 0.25 12.04 4.88 85.64 0.42 12.46 16 9 C -0.55 -28.02 9.39 25.60 0.24 -27.78 16 10 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 11 C 0.02 1.28 5.46 84.65 0.46 1.74 16 12 N -0.92 -49.97 13.29 21.45 0.28 -49.69 16 13 Si 0.96 40.99 29.54 68.60 2.03 43.02 16 14 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 15 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 C 0.54 23.05 7.62 86.57 0.66 23.71 16 18 O -0.59 -26.81 15.80 -4.09 -0.06 -26.87 16 19 C -0.18 -6.70 8.83 23.43 0.21 -6.49 16 20 C -0.07 -2.39 8.81 24.52 0.22 -2.18 16 21 C 0.08 2.28 4.05 30.50 0.12 2.40 16 22 H 0.09 2.72 7.88 -2.39 -0.02 2.70 16 23 C 0.03 0.67 7.35 72.63 0.53 1.21 16 24 O -0.38 -9.55 11.01 -126.22 -1.39 -10.94 16 25 C 0.23 5.48 1.47 30.60 0.04 5.52 16 26 C -0.17 -3.15 9.19 71.98 0.66 -2.48 16 27 C -0.15 -2.95 9.24 71.98 0.66 -2.29 16 28 O -0.38 -11.12 10.56 -126.22 -1.33 -12.45 16 29 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 1.58 8.12 -2.38 -0.02 1.56 16 31 H 0.06 1.49 6.47 -2.38 -0.02 1.48 16 32 H 0.07 1.32 8.12 -2.38 -0.02 1.30 16 33 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 34 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 36 H 0.08 2.12 8.06 -2.39 -0.02 2.10 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.05 1.79 6.55 -2.39 -0.02 1.78 16 39 H 0.07 2.59 7.42 -2.39 -0.02 2.57 16 40 H 0.08 2.93 8.07 -2.39 -0.02 2.91 16 41 H 0.03 1.48 6.10 -2.38 -0.01 1.47 16 42 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 43 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 44 H 0.13 5.31 6.07 -2.91 -0.02 5.29 16 45 H 0.13 4.18 7.49 -2.91 -0.02 4.16 16 46 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 47 H 0.09 1.92 8.04 -2.39 -0.02 1.90 16 48 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 53 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -61.94 430.22 1.29 -60.66 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.86 Total: 29.68 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 7.71 Total: 12.82 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -6.52 Total: -95.91 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -2.79 Total: -50.26 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -61.94 1.29 -60.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597621204.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.562 kcal (2) G-P(sol) polarization free energy of solvation -61.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds