Wall clock time and date at job start Sat Apr 11 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46586 * 2 1 4 4 C 1.52996 * 109.47243 * 240.00451 * 2 1 3 5 5 O 1.45194 * 109.47101 * 120.00080 * 2 1 3 6 6 C 1.34637 * 117.00250 * 60.00438 * 5 2 1 7 7 O 1.21509 * 119.99772 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00149 * 179.72572 * 6 5 2 9 9 C 1.46925 * 120.62917 * 353.77261 * 8 6 5 10 10 C 1.53196 * 108.77641 * 126.37162 * 9 8 6 11 11 C 1.53040 * 109.31495 * 54.63315 * 10 9 8 12 12 C 1.53042 * 109.53474 * 298.63709 * 11 10 9 13 13 C 1.53002 * 109.49729 * 181.31701 * 12 11 10 14 14 C 1.52997 * 109.49813 * 301.37890 * 12 11 10 15 15 C 1.46931 * 120.63315 * 173.49128 * 8 6 5 16 16 H 1.08996 * 109.58377 * 113.84347 * 15 8 6 17 17 C 1.50702 * 109.58295 * 353.41805 * 15 8 6 18 18 O 1.21279 * 119.99821 * 302.07365 * 17 15 8 19 19 N 1.34774 * 120.00019 * 122.07082 * 17 15 8 20 20 C 1.46497 * 120.00119 * 179.97438 * 19 17 15 21 21 C 1.50705 * 109.47190 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99730 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00216 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99526 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00205 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46870 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47361 * 119.99978 * 25 23 21 28 28 H 1.48501 * 109.46976 * 240.00266 * 25 23 21 29 29 H 1.08997 * 109.47294 * 299.99275 * 1 2 3 30 30 H 1.09004 * 109.47111 * 60.00111 * 1 2 3 31 31 H 1.09004 * 109.46390 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47135 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47923 * 299.99938 * 3 2 1 34 34 H 1.09005 * 109.47003 * 60.00262 * 3 2 1 35 35 H 1.09010 * 109.46910 * 299.99846 * 4 2 1 36 36 H 1.08999 * 109.47312 * 59.99253 * 4 2 1 37 37 H 1.09002 * 109.47087 * 180.02562 * 4 2 1 38 38 H 1.09006 * 109.58501 * 246.15133 * 9 8 6 39 39 H 1.08996 * 109.58971 * 6.43889 * 9 8 6 40 40 H 1.09002 * 109.49569 * 174.58799 * 10 9 8 41 41 H 1.08997 * 109.49607 * 294.68203 * 10 9 8 42 42 H 1.09003 * 109.45811 * 58.65261 * 11 10 9 43 43 H 1.08995 * 109.46494 * 178.63170 * 11 10 9 44 44 H 1.09004 * 109.47345 * 59.99384 * 13 12 11 45 45 H 1.08995 * 109.47766 * 180.02562 * 13 12 11 46 46 H 1.09005 * 109.47046 * 299.99685 * 13 12 11 47 47 H 1.08997 * 109.47203 * 60.00180 * 14 12 11 48 48 H 1.09002 * 109.47107 * 180.02562 * 14 12 11 49 49 H 1.09001 * 109.47406 * 300.00148 * 14 12 11 50 50 H 0.97005 * 119.99602 * 0.02562 * 19 17 15 51 51 H 1.08998 * 109.47459 * 300.00033 * 20 19 17 52 52 H 1.09001 * 109.46866 * 60.00858 * 20 19 17 53 53 H 0.96998 * 119.99805 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5039 8 7 2.0723 -2.6672 2.4140 9 6 3.0332 -2.0786 3.3569 10 6 2.4510 -2.1634 4.7714 11 6 2.0776 -3.6153 5.0789 12 6 1.0118 -4.0903 4.0886 13 6 0.6153 -5.5311 4.4172 14 6 -0.2185 -3.1864 4.1899 15 6 1.5733 -4.0253 2.6695 16 1 2.3906 -4.7396 2.5698 17 6 0.4848 -4.3577 1.6817 18 8 -0.5041 -3.6590 1.6113 19 7 0.6101 -5.4312 0.8766 20 6 -0.4483 -5.7546 -0.0832 21 6 -0.0656 -6.9909 -0.8554 22 1 0.8720 -7.4864 -0.6512 23 6 -0.9131 -7.4900 -1.8218 24 7 -2.0551 -6.8869 -2.0699 25 14 -0.4391 -9.0228 -2.7784 26 1 0.8856 -9.5067 -2.3132 27 1 -1.4585 -10.0797 -2.5567 28 1 -0.3672 -8.7002 -4.2261 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1392 37 1 3.1301 -0.7215 -1.2490 38 1 3.9719 -2.6310 3.3145 39 1 3.2107 -1.0357 3.0945 40 1 3.1930 -1.8182 5.4915 41 1 1.5612 -1.5372 4.8367 42 1 2.9629 -4.2448 4.9892 43 1 1.6856 -3.6824 6.0937 44 1 0.2155 -5.5759 5.4303 45 1 -0.1434 -5.8692 3.7115 46 1 1.4918 -6.1749 4.3438 47 1 0.0642 -2.1604 3.9546 48 1 -0.9774 -3.5254 3.4847 49 1 -0.6189 -3.2298 5.2028 50 1 1.4009 -5.9901 0.9332 51 1 -1.3812 -5.9338 0.4513 52 1 -0.5794 -4.9215 -0.7738 53 1 -2.6511 -7.2378 -2.7500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626386546.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:34 Heat of formation + Delta-G solvation = -137.047137 kcal Electronic energy + Delta-G solvation = -33466.282026 eV Core-core repulsion = 29337.376957 eV Total energy + Delta-G solvation = -4128.905068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48225 -40.88533 -39.04977 -37.79678 -36.06547 -35.63709 -34.57907 -34.29198 -33.00467 -29.76512 -28.41307 -28.31293 -28.18438 -28.09218 -26.76850 -24.91244 -23.47286 -22.91892 -21.40910 -20.48700 -19.71019 -19.29863 -18.34536 -17.65084 -17.48663 -17.00900 -16.92338 -16.67495 -16.22984 -15.77747 -15.58415 -15.45568 -15.14481 -14.94000 -14.73954 -14.46057 -14.32775 -14.18669 -13.91860 -13.65102 -13.60245 -13.26832 -13.13044 -12.97424 -12.91121 -12.85495 -12.84319 -12.75103 -12.71280 -12.49877 -12.41215 -12.22416 -12.16579 -12.09638 -11.90988 -11.52081 -11.43590 -11.38231 -11.33760 -10.83694 -10.66485 -10.25200 -9.77315 -9.51623 -8.28404 -6.45043 0.98651 1.39598 1.42082 1.55401 1.87002 2.10874 2.32615 2.55875 2.98045 3.05881 3.56073 3.73377 3.75600 3.78343 3.83649 3.92985 4.07530 4.08739 4.12843 4.33755 4.43297 4.50826 4.55381 4.60030 4.70105 4.71344 4.71571 4.78635 4.81396 4.86115 4.87436 4.95717 4.97544 5.08746 5.10806 5.11865 5.16077 5.26704 5.27269 5.29934 5.32338 5.34540 5.39064 5.48601 5.50496 5.54342 5.63433 5.80637 5.92250 6.33538 6.67850 7.05666 7.24750 7.37580 7.75911 8.84414 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.004416 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.314667 B = 6338.447087 C = 8296.303730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.131 3.869 3 C -0.127 4.127 4 C -0.177 4.177 5 O -0.359 6.359 6 C 0.631 3.369 7 O -0.558 6.558 8 N -0.585 5.585 9 C 0.109 3.891 10 C -0.134 4.134 11 C -0.099 4.099 12 C -0.062 4.062 13 C -0.141 4.141 14 C -0.140 4.140 15 C 0.158 3.842 16 H 0.110 0.890 17 C 0.521 3.479 18 O -0.568 6.568 19 N -0.712 5.712 20 C 0.287 3.713 21 C -0.552 4.552 22 H 0.081 0.919 23 C 0.002 3.998 24 N -0.933 5.933 25 Si 0.986 3.014 26 H -0.252 1.252 27 H -0.276 1.276 28 H -0.280 1.280 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.023 0.977 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.038 0.962 49 H 0.066 0.934 50 H 0.398 0.602 51 H -0.022 1.022 52 H -0.028 1.028 53 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.164 12.867 15.173 25.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.095 3.905 3 C -0.184 4.184 4 C -0.234 4.234 5 O -0.275 6.275 6 C 0.386 3.614 7 O -0.445 6.445 8 N -0.328 5.328 9 C -0.012 4.012 10 C -0.171 4.171 11 C -0.137 4.137 12 C -0.064 4.064 13 C -0.199 4.199 14 C -0.197 4.197 15 C 0.052 3.948 16 H 0.127 0.873 17 C 0.309 3.691 18 O -0.447 6.447 19 N -0.362 5.362 20 C 0.164 3.836 21 C -0.590 4.590 22 H 0.099 0.901 23 C -0.197 4.197 24 N -0.572 5.572 25 Si 0.808 3.192 26 H -0.175 1.175 27 H -0.201 1.201 28 H -0.205 1.205 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.042 0.958 46 H 0.101 0.899 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.085 0.915 50 H 0.232 0.768 51 H -0.004 1.004 52 H -0.010 1.010 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.078 13.287 14.679 24.887 hybrid contribution -0.659 -0.942 -1.207 1.667 sum 14.419 12.345 13.472 23.277 Atomic orbital electron populations 1.22424 0.95438 1.02783 1.02864 1.22296 0.93460 0.93195 0.81593 1.21828 1.02715 0.89613 1.04262 1.22425 1.01791 1.01554 0.97663 1.86219 1.71634 1.22631 1.46966 1.18425 0.78811 0.81261 0.82940 1.91128 1.40332 1.69401 1.43654 1.46816 1.46834 1.14514 1.24647 1.22071 0.90912 0.99905 0.88285 1.22005 1.02033 0.97312 0.95799 1.21605 0.97571 0.96271 0.98209 1.20769 0.96777 0.97096 0.91726 1.21869 1.01856 0.94049 1.02137 1.21965 0.97641 0.98902 1.01155 1.21204 0.95406 0.83213 0.94974 0.87285 1.20353 0.87991 0.79717 0.81084 1.90564 1.34598 1.50012 1.69533 1.46016 1.23253 1.28865 1.38075 1.18235 0.85493 0.93868 0.86035 1.21659 1.06057 1.10831 1.20456 0.90124 1.26105 0.94393 1.01363 0.97866 1.70178 1.11518 1.42051 1.33444 0.85105 0.79025 0.77428 0.77600 1.17521 1.20103 1.20546 0.92165 0.89740 0.93737 0.90290 0.88362 0.90910 0.93720 0.89683 0.91036 0.88643 0.88700 0.87011 0.92598 0.89160 0.89275 0.89856 0.95790 0.89936 0.93867 0.94301 0.91496 0.76801 1.00370 1.00973 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.75 8.37 71.98 0.60 -5.15 16 2 C 0.13 3.65 1.13 -10.79 -0.01 3.64 16 3 C -0.13 -2.25 8.85 71.98 0.64 -1.61 16 4 C -0.18 -5.24 8.37 71.98 0.60 -4.64 16 5 O -0.36 -11.00 8.53 -55.46 -0.47 -11.48 16 6 C 0.63 23.16 7.38 129.79 0.96 24.12 16 7 O -0.56 -26.17 7.53 27.75 0.21 -25.96 16 8 N -0.59 -17.05 2.42 -930.22 -2.25 -19.31 16 9 C 0.11 1.95 6.46 86.36 0.56 2.51 16 10 C -0.13 -1.88 5.74 30.67 0.18 -1.71 16 11 C -0.10 -1.46 4.71 30.62 0.14 -1.31 16 12 C -0.06 -1.53 0.54 -52.25 -0.03 -1.56 16 13 C -0.14 -3.34 8.30 71.98 0.60 -2.75 16 14 C -0.14 -4.29 7.25 71.98 0.52 -3.76 16 15 C 0.16 4.84 2.51 44.08 0.11 4.95 16 16 H 0.11 2.75 7.93 -2.39 -0.02 2.73 16 17 C 0.52 23.12 3.40 87.66 0.30 23.42 16 18 O -0.57 -30.45 11.49 20.85 0.24 -30.21 16 19 N -0.71 -33.92 5.55 -466.79 -2.59 -36.51 16 20 C 0.29 17.31 5.43 85.64 0.46 17.78 16 21 C -0.55 -32.28 9.28 25.60 0.24 -32.04 16 22 H 0.08 4.28 7.60 -2.91 -0.02 4.26 16 23 C 0.00 0.10 5.46 84.66 0.46 0.56 16 24 N -0.93 -59.63 13.29 21.45 0.28 -59.35 16 25 Si 0.99 44.55 29.54 68.60 2.03 46.57 16 26 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.04 1.95 5.88 -2.39 -0.01 1.94 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.04 1.78 5.88 -2.38 -0.01 1.76 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.09 1.66 6.92 -2.39 -0.02 1.64 16 40 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 1.02 6.34 -2.39 -0.02 1.00 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.02 0.75 7.41 -2.39 -0.02 0.73 16 46 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.04 1.38 5.98 -2.39 -0.01 1.37 16 48 H 0.04 1.60 5.50 -2.39 -0.01 1.58 16 49 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 50 H 0.40 16.16 8.17 -92.70 -0.76 15.40 16 51 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 52 H -0.03 -1.95 8.14 -2.39 -0.02 -1.97 16 53 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -86.01 399.02 3.91 -82.10 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.14 Total: 31.70 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: 6.33 Total: 22.44 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -4.56 Total: -115.16 kcal Atomic # 8 Polarization: -67.62 SS G_CDS: -0.02 Total: -67.65 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -86.01 3.91 -82.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626386546.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.949 kcal (2) G-P(sol) polarization free energy of solvation -86.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds