Wall clock time and date at job start Sat Apr 11 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46806 * 2 1 4 4 C 1.52998 * 109.47594 * 239.99954 * 2 1 3 5 5 O 1.45202 * 109.47209 * 119.99406 * 2 1 3 6 6 C 1.34636 * 116.99571 * 60.00295 * 5 2 1 7 7 O 1.21518 * 119.99965 * 359.97438 * 6 5 2 8 8 N 1.34779 * 120.00101 * 179.97438 * 6 5 2 9 9 C 1.46931 * 120.62785 * 359.97438 * 8 6 5 10 10 C 1.53194 * 108.77629 * 126.41058 * 9 8 6 11 11 C 1.53039 * 109.31026 * 54.63121 * 10 9 8 12 12 C 1.53037 * 109.54101 * 298.63204 * 11 10 9 13 13 C 1.52995 * 109.49812 * 301.41683 * 12 11 10 14 14 C 1.53001 * 109.49926 * 181.31935 * 12 11 10 15 15 C 1.46922 * 120.63168 * 179.97438 * 8 6 5 16 16 H 1.08996 * 109.58946 * 353.37614 * 15 8 6 17 17 C 1.50704 * 109.70243 * 113.73181 * 15 8 6 18 18 O 1.21275 * 120.00055 * 19.36292 * 17 15 8 19 19 N 1.34781 * 119.99776 * 199.35776 * 17 15 8 20 20 C 1.46496 * 119.99688 * 179.97438 * 19 17 15 21 21 C 1.50698 * 109.46940 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00496 * 0.02562 * 21 20 19 23 23 C 1.37888 * 119.99758 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99657 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47097 * 90.00149 * 25 23 21 27 27 H 1.48496 * 109.46826 * 210.00296 * 25 23 21 28 28 H 1.48497 * 109.47208 * 329.99850 * 25 23 21 29 29 H 1.09002 * 109.47474 * 300.00427 * 1 2 3 30 30 H 1.09004 * 109.46985 * 60.00322 * 1 2 3 31 31 H 1.08997 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46554 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.46792 * 299.99735 * 3 2 1 34 34 H 1.09006 * 109.46858 * 59.99994 * 3 2 1 35 35 H 1.08999 * 109.46583 * 299.99818 * 4 2 1 36 36 H 1.08997 * 109.46836 * 59.99626 * 4 2 1 37 37 H 1.08996 * 109.47018 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.57916 * 246.19424 * 9 8 6 39 39 H 1.08997 * 109.58813 * 6.62026 * 9 8 6 40 40 H 1.09000 * 109.49137 * 174.58300 * 10 9 8 41 41 H 1.08993 * 109.49811 * 294.64709 * 10 9 8 42 42 H 1.09000 * 109.46006 * 178.60912 * 11 10 9 43 43 H 1.09006 * 109.46060 * 58.65927 * 11 10 9 44 44 H 1.09000 * 109.47334 * 179.83831 * 13 12 11 45 45 H 1.09002 * 109.47438 * 299.83405 * 13 12 11 46 46 H 1.08997 * 109.47269 * 59.83987 * 13 12 11 47 47 H 1.09004 * 109.47033 * 300.16618 * 14 12 11 48 48 H 1.09001 * 109.47223 * 60.15964 * 14 12 11 49 49 H 1.08995 * 109.47248 * 180.16761 * 14 12 11 50 50 H 0.97000 * 119.99978 * 0.02562 * 19 17 15 51 51 H 1.08996 * 109.47358 * 300.00699 * 20 19 17 52 52 H 1.09006 * 109.47025 * 60.00717 * 20 19 17 53 53 H 0.96997 * 119.99638 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0680 -2.6656 2.4168 9 6 2.9169 -2.0300 3.4338 10 6 2.2634 -2.2145 4.8070 11 6 2.0022 -3.7032 5.0472 12 6 1.0417 -4.2331 3.9801 13 6 -0.2669 -3.4423 4.0329 14 6 0.7554 -5.7134 4.2404 15 6 1.6811 -4.0713 2.5977 16 1 0.9635 -4.3548 1.8279 17 6 2.9010 -4.9508 2.4995 18 8 4.0059 -4.4741 2.6506 19 7 2.7641 -6.2670 2.2438 20 6 3.9499 -7.1217 2.1478 21 6 3.5259 -8.5382 1.8569 22 1 2.4779 -8.7778 1.7534 23 6 4.4760 -9.5285 1.7228 24 7 5.7521 -9.2369 1.8493 25 14 3.9504 -11.2843 1.3614 26 1 3.8880 -11.4898 -0.1079 27 1 4.9342 -12.2269 1.9518 28 1 2.6111 -11.5318 1.9532 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6765 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2491 36 1 1.6767 -0.2074 -2.1391 37 1 3.1301 -0.7216 -1.2489 38 1 3.9015 -2.4975 3.4319 39 1 3.0146 -0.9665 3.2155 40 1 2.9290 -1.8323 5.5809 41 1 1.3199 -1.6696 4.8370 42 1 1.5598 -3.8397 6.0340 43 1 2.9434 -4.2504 4.9927 44 1 -0.9496 -3.8181 3.2709 45 1 -0.7218 -3.5576 5.0168 46 1 -0.0619 -2.3877 3.8488 47 1 1.6885 -6.2757 4.2040 48 1 0.3004 -5.8279 5.2242 49 1 0.0737 -6.0911 3.4785 50 1 1.8803 -6.6481 2.1227 51 1 4.5925 -6.7627 1.3439 52 1 4.4965 -7.0921 3.0905 53 1 6.4204 -9.9335 1.7547 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626386547.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:38 Heat of formation + Delta-G solvation = -147.739560 kcal Electronic energy + Delta-G solvation = -32754.464556 eV Core-core repulsion = 28625.095829 eV Total energy + Delta-G solvation = -4129.368727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.46984 -41.20794 -39.11001 -37.84539 -36.40856 -35.73439 -34.67879 -34.27079 -33.08728 -29.91832 -28.37087 -28.33627 -28.23458 -28.12522 -26.87881 -24.83025 -23.32335 -23.03698 -21.71318 -20.56806 -20.07009 -19.05313 -18.61863 -17.78103 -17.44383 -17.16313 -17.03884 -16.71595 -16.38779 -15.97541 -15.62064 -15.44271 -15.21374 -14.97506 -14.83187 -14.48542 -14.45001 -14.08547 -14.04780 -13.75754 -13.45898 -13.23818 -13.12796 -13.03134 -12.94433 -12.86730 -12.84759 -12.76553 -12.71431 -12.55337 -12.48246 -12.29989 -12.24620 -12.19983 -11.84878 -11.52731 -11.45593 -11.41717 -11.39222 -11.07726 -10.93456 -10.80935 -9.84083 -9.63080 -8.30299 -6.46719 0.94449 1.42137 1.44292 1.55528 1.61616 1.68758 2.30664 2.52787 2.78214 3.04635 3.53078 3.65289 3.69285 3.76419 3.80845 3.90509 3.95645 4.02811 4.18335 4.30509 4.39195 4.47191 4.56302 4.62483 4.67952 4.71348 4.76808 4.81486 4.84429 4.86028 4.88936 4.92714 4.96494 5.04064 5.05967 5.08029 5.12486 5.17919 5.21564 5.23676 5.28612 5.30363 5.35513 5.40531 5.44182 5.47288 5.53457 5.65035 5.82678 6.26028 6.62747 6.81001 7.19356 7.21454 7.38958 8.81729 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.003284 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.302542 B = 8525.254703 C = 9451.984166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 C -0.133 4.133 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.653 3.347 7 O -0.591 6.591 8 N -0.572 5.572 9 C 0.103 3.897 10 C -0.123 4.123 11 C -0.113 4.113 12 C -0.059 4.059 13 C -0.128 4.128 14 C -0.156 4.156 15 C 0.157 3.843 16 H 0.115 0.885 17 C 0.494 3.506 18 O -0.582 6.582 19 N -0.701 5.701 20 C 0.272 3.728 21 C -0.555 4.555 22 H 0.082 0.918 23 C 0.006 3.994 24 N -0.930 5.930 25 Si 0.983 3.017 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.254 1.254 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.037 0.963 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.044 0.956 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.406 0.594 51 H -0.019 1.019 52 H -0.007 1.007 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 20.119 3.485 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.408 3.592 7 O -0.482 6.482 8 N -0.310 5.310 9 C -0.019 4.019 10 C -0.161 4.161 11 C -0.151 4.151 12 C -0.060 4.060 13 C -0.185 4.185 14 C -0.214 4.214 15 C 0.050 3.950 16 H 0.133 0.867 17 C 0.279 3.721 18 O -0.463 6.463 19 N -0.351 5.351 20 C 0.149 3.851 21 C -0.593 4.593 22 H 0.100 0.900 23 C -0.194 4.194 24 N -0.568 5.568 25 Si 0.806 3.194 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.177 1.177 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.107 0.893 49 H 0.091 0.909 50 H 0.242 0.758 51 H -0.001 1.001 52 H 0.011 0.989 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.209 20.309 3.272 25.001 hybrid contribution 0.473 -1.423 -0.652 1.635 sum -13.736 18.886 2.620 23.500 Atomic orbital electron populations 1.22440 0.93223 1.03751 1.03844 1.22484 0.95169 0.92690 0.81080 1.21874 1.02150 0.90346 1.04639 1.22495 1.01153 1.02195 0.98146 1.86308 1.71493 1.22551 1.47351 1.18010 0.78639 0.81179 0.81357 1.90869 1.42834 1.71016 1.43523 1.46567 1.52614 1.10042 1.21763 1.21998 0.93858 0.98322 0.87686 1.21913 1.02299 0.96423 0.95461 1.21641 0.98172 0.96166 0.99113 1.20828 0.96693 0.97813 0.90663 1.21798 0.94020 0.99299 1.03351 1.22112 1.02173 0.93097 1.04015 1.21149 0.93177 0.78963 1.01719 0.86682 1.21449 0.91307 0.83212 0.76085 1.90586 1.29046 1.74513 1.52111 1.46355 1.11294 1.07718 1.69777 1.18511 0.83506 0.89006 0.94067 1.21586 0.94600 0.92450 1.50614 0.89959 1.26036 0.94532 1.04610 0.94226 1.70133 1.01615 1.35603 1.49482 0.85188 0.78695 0.77065 0.78495 1.19866 1.20818 1.17730 0.91344 0.88977 0.92042 0.91794 0.87724 0.90586 0.92528 0.88588 0.92973 0.91962 0.88234 0.88815 0.89417 0.88686 0.94435 0.92394 0.89674 0.92611 0.93664 0.89289 0.90945 0.75820 1.00074 0.98922 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.39 8.37 71.98 0.60 -2.79 16 2 C 0.12 2.63 1.13 -10.79 -0.01 2.62 16 3 C -0.13 -1.88 8.85 71.99 0.64 -1.24 16 4 C -0.18 -4.34 8.37 71.98 0.60 -3.74 16 5 O -0.36 -9.98 8.53 -55.45 -0.47 -10.45 16 6 C 0.65 21.01 7.74 129.79 1.00 22.01 16 7 O -0.59 -21.06 11.29 19.78 0.22 -20.83 16 8 N -0.57 -17.87 1.99 -929.44 -1.85 -19.72 16 9 C 0.10 2.84 5.95 86.36 0.51 3.36 16 10 C -0.12 -2.56 5.74 30.67 0.18 -2.38 16 11 C -0.11 -2.70 4.55 30.62 0.14 -2.56 16 12 C -0.06 -1.42 0.55 -52.11 -0.03 -1.45 16 13 C -0.13 -2.39 7.99 71.98 0.57 -1.81 16 14 C -0.16 -3.72 7.30 71.98 0.53 -3.19 16 15 C 0.16 5.04 2.00 44.22 0.09 5.13 16 16 H 0.12 3.76 7.00 -2.39 -0.02 3.75 16 17 C 0.49 20.79 5.46 87.66 0.48 21.27 16 18 O -0.58 -28.90 13.98 -3.01 -0.04 -28.94 16 19 N -0.70 -30.87 4.13 -466.79 -1.93 -32.80 16 20 C 0.27 15.14 5.43 85.63 0.46 15.61 16 21 C -0.55 -30.51 9.28 25.60 0.24 -30.27 16 22 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 23 C 0.01 0.32 5.46 84.66 0.46 0.78 16 24 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 25 Si 0.98 42.71 29.54 68.60 2.03 44.74 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 28 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.06 1.73 5.88 -2.39 -0.01 1.72 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 2.16 6.17 -2.39 -0.01 2.15 16 39 H 0.10 2.40 6.93 -2.39 -0.02 2.39 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.50 6.33 -2.39 -0.02 1.49 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.04 1.18 7.11 -2.38 -0.02 1.16 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.05 1.09 5.97 -2.39 -0.01 1.07 16 47 H 0.04 1.39 6.02 -2.38 -0.01 1.37 16 48 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.07 1.54 8.07 -2.39 -0.02 1.53 16 50 H 0.41 15.35 7.25 -92.71 -0.67 14.68 16 51 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 52 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 53 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -74.43 400.73 4.94 -69.49 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.23 Total: 33.35 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 6.47 Total: 21.34 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.49 Total: -108.68 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -0.29 Total: -60.23 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.43 4.94 -69.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626386547.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.252 kcal (2) G-P(sol) polarization free energy of solvation -74.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds