Wall clock time and date at job start Sat Apr 11 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99758 * 2 1 4 4 H 1.48498 * 109.47243 * 89.99932 * 3 2 1 5 5 H 1.48500 * 109.47213 * 329.99689 * 3 2 1 6 6 H 1.48505 * 109.46893 * 209.99877 * 3 2 1 7 7 C 1.38812 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00212 * 219.18571 * 7 2 1 9 9 N 1.36936 * 119.99764 * 39.18637 * 7 2 1 10 10 C 1.46496 * 119.99982 * 30.45858 * 9 7 2 11 11 C 1.52997 * 109.47611 * 85.02797 * 10 9 7 12 12 O 1.42902 * 109.47371 * 64.99747 * 11 10 9 13 13 C 1.46504 * 119.99777 * 210.45308 * 9 7 2 14 14 H 1.09004 * 109.49458 * 180.02562 * 13 9 7 15 15 C 1.53037 * 109.49600 * 59.93657 * 13 9 7 16 16 C 1.53037 * 109.53797 * 178.67902 * 15 13 9 17 17 C 1.53201 * 109.31087 * 61.36885 * 16 15 13 18 18 N 1.46928 * 108.77281 * 305.36197 * 17 16 15 19 19 C 1.34774 * 120.63203 * 233.61009 * 18 17 16 20 20 O 1.21279 * 120.00101 * 3.94428 * 19 18 17 21 21 C 1.50700 * 119.99968 * 183.94867 * 19 18 17 22 22 H 1.09000 * 109.53583 * 320.28818 * 21 19 18 23 23 C 1.54208 * 109.53918 * 200.12486 * 21 19 18 24 24 C 1.46283 * 111.98920 * 162.60107 * 23 21 19 25 25 C 1.54124 * 112.20109 * 61.41330 * 24 23 21 26 26 O 1.40318 * 108.70575 * 280.43895 * 25 24 23 27 27 C 1.43992 * 116.57791 * 95.04059 * 26 25 24 28 28 C 1.50619 * 109.54172 * 80.53422 * 21 19 18 29 29 C 1.46940 * 118.76310 * 53.59095 * 18 17 16 30 30 H 0.97004 * 120.00108 * 185.90277 * 1 2 3 31 31 H 1.09007 * 109.47049 * 205.02924 * 10 9 7 32 32 H 1.08995 * 109.47478 * 325.02308 * 10 9 7 33 33 H 1.08996 * 109.47622 * 184.99991 * 11 10 9 34 34 H 1.09004 * 109.46636 * 305.00010 * 11 10 9 35 35 H 0.96702 * 114.00503 * 180.02562 * 12 11 10 36 36 H 1.08994 * 109.46064 * 298.70136 * 15 13 9 37 37 H 1.09006 * 109.45766 * 58.66596 * 15 13 9 38 38 H 1.08998 * 109.50177 * 181.31887 * 16 15 13 39 39 H 1.09001 * 109.50411 * 301.41765 * 16 15 13 40 40 H 1.08999 * 109.58577 * 65.14905 * 17 16 15 41 41 H 1.09000 * 109.58756 * 185.43889 * 17 16 15 42 42 H 1.09004 * 108.97459 * 283.25016 * 23 21 19 43 43 H 1.08998 * 108.97612 * 42.04046 * 23 21 19 44 44 H 1.08998 * 108.93774 * 182.11681 * 24 23 21 45 45 H 1.09000 * 108.93891 * 300.71382 * 24 23 21 46 46 H 1.09003 * 109.59590 * 40.20512 * 25 24 23 47 47 H 1.08994 * 109.59723 * 160.66965 * 25 24 23 48 48 H 1.09001 * 108.69412 * 78.91367 * 27 26 25 49 49 H 1.09002 * 108.69285 * 197.00468 * 27 26 25 50 50 H 1.08996 * 108.88702 * 330.97508 * 28 21 19 51 51 H 1.09005 * 108.88157 * 89.43418 * 28 21 19 52 52 H 1.08996 * 109.61387 * 186.64035 * 29 18 17 53 53 H 1.08999 * 109.56374 * 66.21195 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 1.4000 5 1 1.4476 2.6527 -0.7001 6 1 3.5477 1.4402 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 2.9080 -1.3071 0.5915 9 7 1.5565 -2.2550 -0.7483 10 6 0.8251 -2.0070 -1.9932 11 6 1.8199 -1.8117 -3.1390 12 8 2.5385 -3.0272 -3.3585 13 6 1.8026 -3.6294 -0.3046 14 1 1.3713 -4.3264 -1.0231 15 6 1.1596 -3.8460 1.0672 16 6 1.3878 -5.2909 1.5169 17 6 2.8925 -5.5510 1.6417 18 7 3.5391 -5.2061 0.3683 19 6 4.3259 -6.0978 -0.2660 20 8 4.4487 -7.2205 0.1760 21 6 5.0531 -5.6998 -1.5245 22 1 4.4035 -5.0767 -2.1393 23 6 5.4508 -6.9645 -2.3122 24 6 5.7835 -6.6608 -3.7040 25 6 6.9864 -5.7043 -3.8198 26 8 6.5436 -4.3938 -3.5842 27 6 6.6819 -3.8992 -2.2390 28 6 6.2981 -4.9319 -1.1656 29 6 3.3118 -3.8708 -0.2013 30 1 -0.4850 -0.8356 0.0864 31 1 0.1813 -2.8590 -2.2122 32 1 0.2158 -1.1099 -1.8841 33 1 1.2805 -1.5397 -4.0463 34 1 2.5202 -1.0173 -2.8807 35 1 3.1888 -2.9764 -4.0724 36 1 1.6088 -3.1654 1.7903 37 1 0.0892 -3.6510 1.0013 38 1 0.9096 -5.4511 2.4832 39 1 0.9606 -5.9727 0.7816 40 1 3.3050 -4.9340 2.4399 41 1 3.0638 -6.6035 1.8676 42 1 6.3156 -7.4232 -1.8329 43 1 4.6199 -7.6697 -2.2935 44 1 6.0195 -7.5903 -4.2221 45 1 4.9187 -6.2010 -4.1823 46 1 7.7405 -5.9740 -3.0803 47 1 7.4122 -5.7719 -4.8209 48 1 7.7181 -3.6001 -2.0815 49 1 6.0444 -3.0227 -2.1218 50 1 6.1331 -4.4139 -0.2208 51 1 7.1223 -5.6343 -1.0413 52 1 3.7595 -3.8152 -1.1935 53 1 3.7590 -3.1168 0.4464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656771867.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:09 Heat of formation + Delta-G solvation = -134.549212 kcal Electronic energy + Delta-G solvation = -33458.086166 eV Core-core repulsion = 29329.289416 eV Total energy + Delta-G solvation = -4128.796750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.74397 -39.99439 -39.07678 -37.72999 -36.34753 -35.75028 -34.15414 -33.47100 -32.85908 -31.29929 -28.81782 -28.32479 -27.05900 -26.01556 -25.81702 -23.83039 -22.81338 -21.96211 -21.75493 -21.25221 -19.88631 -18.85166 -18.32809 -18.09348 -17.80455 -17.30000 -16.72462 -16.48918 -16.17798 -15.86234 -15.64370 -15.56041 -15.30211 -15.09027 -15.02523 -14.73420 -14.50012 -14.22252 -14.01681 -13.93200 -13.81191 -13.80430 -13.44756 -13.07108 -12.68529 -12.61455 -12.50505 -12.39106 -12.18151 -12.09159 -11.99348 -11.87728 -11.75003 -11.70214 -11.59580 -11.48222 -11.37307 -11.35506 -10.72913 -10.67864 -10.32578 -10.23088 -9.71773 -8.78715 -8.16428 -5.25442 1.54223 1.63241 1.67711 1.86106 1.96839 2.70073 2.94582 3.14681 3.33972 3.56028 3.59396 3.70275 3.81627 3.94158 3.96930 4.01881 4.05807 4.11637 4.24961 4.27759 4.33236 4.40679 4.49648 4.52865 4.56503 4.60491 4.62275 4.65924 4.74166 4.76736 4.80618 4.83864 4.93066 4.95563 4.97928 5.03971 5.05470 5.09625 5.18134 5.19332 5.24389 5.27551 5.40560 5.42253 5.48277 5.52193 6.06201 6.38879 6.45840 6.50993 7.06344 7.09884 7.16109 7.87309 8.35026 8.99620 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011145 B = 0.004675 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2511.736500 B = 5988.505212 C = 7205.995705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.054 4.054 3 Si 1.085 2.915 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.346 4.346 8 H 0.045 0.955 9 N -0.584 5.584 10 C 0.142 3.858 11 C 0.076 3.924 12 O -0.574 6.574 13 C 0.175 3.825 14 H 0.044 0.956 15 C -0.116 4.116 16 C -0.119 4.119 17 C 0.111 3.889 18 N -0.605 5.605 19 C 0.517 3.483 20 O -0.583 6.583 21 C -0.098 4.098 22 H 0.100 0.900 23 C -0.091 4.091 24 C -0.146 4.146 25 C 0.063 3.937 26 O -0.395 6.395 27 C 0.070 3.930 28 C -0.136 4.136 29 C 0.119 3.881 30 H 0.255 0.745 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.033 0.967 35 H 0.382 0.618 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.101 0.899 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.069 0.931 51 H 0.080 0.920 52 H 0.095 0.905 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 -10.086 -6.412 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.255 4.255 3 Si 0.911 3.089 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.476 4.476 8 H 0.062 0.938 9 N -0.306 5.306 10 C 0.015 3.985 11 C -0.004 4.004 12 O -0.380 6.380 13 C 0.067 3.933 14 H 0.062 0.938 15 C -0.156 4.156 16 C -0.158 4.158 17 C -0.011 4.011 18 N -0.337 5.337 19 C 0.307 3.693 20 O -0.464 6.464 21 C -0.119 4.119 22 H 0.118 0.882 23 C -0.129 4.129 24 C -0.184 4.184 25 C -0.014 4.014 26 O -0.314 6.314 27 C -0.006 4.006 28 C -0.174 4.174 29 C -0.005 4.005 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.230 0.770 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.119 0.881 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.088 0.912 51 H 0.099 0.901 52 H 0.113 0.887 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.743 -9.102 -5.887 15.981 hybrid contribution -0.087 -1.278 0.308 1.318 sum 11.656 -10.380 -5.579 16.575 Atomic orbital electron populations 1.70894 1.08194 1.29125 1.47019 1.26557 0.95695 1.04002 0.99209 0.83310 0.75006 0.73850 0.76687 1.21832 1.22013 1.20171 1.19640 1.06145 0.93144 1.28629 0.93772 1.43914 1.65842 1.00479 1.20316 1.20934 0.93118 0.99335 0.85082 1.22562 0.94654 0.86183 0.97012 1.86451 1.56882 1.35473 1.59183 1.20575 0.93185 0.86137 0.93383 0.93814 1.21833 0.99502 0.95608 0.98622 1.21833 0.95540 0.96094 1.02305 1.21617 0.92603 1.01767 0.85135 1.48297 1.47139 1.15112 1.23132 1.21096 0.78507 0.83876 0.85803 1.90606 1.65657 1.21383 1.68761 1.21074 0.97704 0.99529 0.93639 0.88193 1.20373 1.01564 0.94988 0.95965 1.21121 1.00222 1.01138 0.95886 1.22504 0.94985 0.81696 1.02178 1.87462 1.85194 1.30793 1.27964 1.22900 1.01524 0.95453 0.80697 1.21814 0.96478 0.99078 1.00048 1.22111 0.98173 0.81130 0.99105 0.93612 0.94737 0.92493 0.93591 0.94905 0.77011 0.93363 0.94443 0.89275 0.92396 0.91104 0.89453 0.91532 0.93017 0.89235 0.91813 0.92190 0.88100 0.91155 0.89793 0.91203 0.90141 0.88710 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.32 12.20 21.65 0.26 -51.06 16 2 C -0.05 -2.83 4.56 84.86 0.39 -2.44 16 3 Si 1.08 47.48 30.05 68.60 2.06 49.54 16 4 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.35 -17.23 8.04 84.03 0.68 -16.55 16 8 H 0.04 2.27 6.85 -2.91 -0.02 2.25 16 9 N -0.58 -26.15 2.23 -677.61 -1.51 -27.66 16 10 C 0.14 6.13 5.53 86.38 0.48 6.61 16 11 C 0.08 2.72 7.36 71.98 0.53 3.25 16 12 O -0.57 -18.39 13.03 -148.98 -1.94 -20.33 16 13 C 0.17 6.90 2.67 45.07 0.12 7.02 16 14 H 0.04 1.80 7.73 -2.38 -0.02 1.78 16 15 C -0.12 -4.43 5.11 30.62 0.16 -4.27 16 16 C -0.12 -3.63 6.08 30.67 0.19 -3.44 16 17 C 0.11 3.37 6.44 86.37 0.56 3.93 16 18 N -0.61 -19.59 2.97 -818.86 -2.43 -22.02 16 19 C 0.52 16.64 6.55 87.66 0.57 17.22 16 20 O -0.58 -21.57 15.47 -3.03 -0.05 -21.62 16 21 C -0.10 -2.57 1.38 -11.90 -0.02 -2.59 16 22 H 0.10 2.85 6.03 -2.39 -0.01 2.84 16 23 C -0.09 -2.10 4.18 28.93 0.12 -1.97 16 24 C -0.15 -2.66 5.47 28.91 0.16 -2.50 16 25 C 0.06 1.05 6.38 72.36 0.46 1.51 16 26 O -0.40 -8.47 10.17 -143.42 -1.46 -9.93 16 27 C 0.07 1.44 6.67 72.26 0.48 1.92 16 28 C -0.14 -3.02 4.61 30.10 0.14 -2.88 16 29 C 0.12 4.15 5.42 86.36 0.47 4.62 16 30 H 0.25 14.75 8.02 -92.71 -0.74 14.00 16 31 H 0.03 1.45 7.82 -2.38 -0.02 1.44 16 32 H 0.06 2.81 5.66 -2.39 -0.01 2.79 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.38 8.92 9.12 -74.06 -0.68 8.25 16 36 H 0.05 2.01 7.70 -2.39 -0.02 2.00 16 37 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.09 2.65 7.01 -2.39 -0.02 2.63 16 42 H 0.07 1.48 7.60 -2.38 -0.02 1.46 16 43 H 0.05 1.36 7.81 -2.39 -0.02 1.34 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 46 H 0.06 0.89 6.98 -2.39 -0.02 0.87 16 47 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 49 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.07 1.68 7.63 -2.39 -0.02 1.66 16 51 H 0.08 1.60 6.84 -2.38 -0.02 1.58 16 52 H 0.09 3.25 4.92 -2.39 -0.01 3.23 16 53 H 0.05 2.06 6.78 -2.39 -0.02 2.04 16 Total: -1.00 -61.72 397.94 0.66 -61.06 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.25 Total: 32.60 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 5.48 Total: 9.43 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -3.68 Total: -100.74 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: -3.45 Total: -51.88 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.06 Total: 49.54 kcal Total: -61.72 0.66 -61.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656771867.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.492 kcal (2) G-P(sol) polarization free energy of solvation -61.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds