Wall clock time and date at job start Sat Apr 11 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99933 * 2 1 4 4 H 1.48502 * 109.47256 * 270.00358 * 3 2 1 5 5 H 1.48501 * 109.46964 * 30.00569 * 3 2 1 6 6 H 1.48506 * 109.46935 * 150.00471 * 3 2 1 7 7 C 1.38812 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00419 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99731 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00020 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.57958 * 34.83912 * 10 9 7 12 12 C 1.53808 * 109.52449 * 154.99798 * 10 9 7 13 13 C 1.52443 * 109.40036 * 197.73492 * 12 10 9 14 14 C 1.53948 * 110.73077 * 246.27408 * 13 12 10 15 15 C 1.52876 * 109.73539 * 44.36700 * 14 13 12 16 16 C 1.53446 * 109.38638 * 72.89699 * 15 14 13 17 17 N 1.45333 * 108.41429 * 282.28743 * 16 15 14 18 18 C 1.34779 * 120.37108 * 136.63380 * 17 16 15 19 19 O 1.21275 * 120.00085 * 179.97438 * 18 17 16 20 20 C 1.50697 * 119.99662 * 359.97438 * 18 17 16 21 21 O 1.42902 * 109.47078 * 180.02562 * 20 18 17 22 22 C 1.42906 * 114.00046 * 179.97438 * 21 20 18 23 23 C 1.52999 * 109.47118 * 180.02562 * 22 21 20 24 24 H 1.08993 * 109.87007 * 53.99030 * 23 22 21 25 25 C 1.54097 * 109.88016 * 175.00198 * 23 22 21 26 26 C 1.54811 * 104.18854 * 121.45238 * 25 23 22 27 27 C 1.54992 * 102.09033 * 20.87901 * 26 25 23 28 28 O 1.43748 * 109.87685 * 292.83529 * 23 22 21 29 29 C 1.46965 * 119.26462 * 316.65527 * 17 16 15 30 30 H 0.97005 * 120.00535 * 359.97438 * 1 2 3 31 31 H 0.97006 * 120.00041 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.48035 * 77.75813 * 12 10 9 33 33 H 1.08996 * 109.48376 * 317.71253 * 12 10 9 34 34 H 1.08994 * 109.22666 * 125.95017 * 13 12 10 35 35 H 1.08998 * 109.18806 * 6.57396 * 13 12 10 36 36 H 1.08997 * 109.43043 * 284.28325 * 14 13 12 37 37 H 1.09002 * 109.38305 * 164.41754 * 14 13 12 38 38 H 1.09005 * 109.48696 * 312.92570 * 15 14 13 39 39 H 1.09004 * 109.48713 * 192.86719 * 15 14 13 40 40 H 1.09002 * 109.67222 * 42.01285 * 16 15 14 41 41 H 1.08999 * 109.68089 * 162.55150 * 16 15 14 42 42 H 1.09004 * 109.47400 * 300.00198 * 20 18 17 43 43 H 1.09001 * 109.47356 * 60.00114 * 20 18 17 44 44 H 1.09000 * 109.47069 * 300.00501 * 22 21 20 45 45 H 1.09000 * 109.46598 * 60.00154 * 22 21 20 46 46 H 1.08998 * 110.48931 * 240.13059 * 25 23 22 47 47 H 1.09007 * 110.48399 * 2.77546 * 25 23 22 48 48 H 1.08998 * 110.90805 * 139.08204 * 26 25 23 49 49 H 1.09000 * 110.90426 * 262.68387 * 26 25 23 50 50 H 1.09001 * 110.61565 * 81.47845 * 27 26 25 51 51 H 1.09000 * 110.61769 * 204.31767 * 27 26 25 52 52 H 1.08999 * 109.53106 * 351.74852 * 29 17 16 53 53 H 1.09006 * 109.53048 * 231.53502 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9707 -3.5516 0.5861 12 6 1.1773 -4.7588 0.6122 13 6 2.0524 -5.9395 1.0174 14 6 1.7314 -7.1759 0.1581 15 6 1.6060 -6.7662 -1.3094 16 6 2.9989 -6.4525 -1.8715 17 7 3.3948 -5.1334 -1.4074 18 6 4.6472 -4.9160 -0.9595 19 8 4.9705 -3.8125 -0.5743 20 6 5.6459 -6.0444 -0.9375 21 8 6.8916 -5.5680 -0.4244 22 6 7.9134 -6.5650 -0.3606 23 6 9.1951 -5.9465 0.2011 24 1 8.9858 -5.4626 1.1550 25 6 10.2647 -7.0394 0.3914 26 6 11.4516 -6.5650 -0.4819 27 6 11.1631 -5.0490 -0.6260 28 8 9.7244 -4.9882 -0.7306 29 6 2.4141 -4.0391 -1.4315 30 1 -0.4851 0.8400 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 0.4418 -5.0866 -0.1224 33 1 0.6646 -4.3678 1.4909 34 1 1.8737 -6.1753 2.0664 35 1 3.1003 -5.6714 0.8832 36 1 0.7923 -7.6163 0.4931 37 1 2.5327 -7.9073 0.2631 38 1 0.9747 -5.8809 -1.3871 39 1 1.1599 -7.5823 -1.8779 40 1 3.7133 -7.1957 -1.5175 41 1 2.9662 -6.4638 -2.9609 42 1 5.2738 -6.8466 -0.3001 43 1 5.7900 -6.4219 -1.9498 44 1 7.5879 -7.3779 0.2886 45 1 8.1050 -6.9533 -1.3609 46 1 10.5627 -7.1035 1.4379 47 1 9.8931 -8.0020 0.0400 48 1 12.4007 -6.7338 0.0268 49 1 11.4401 -7.0573 -1.4544 50 1 11.5071 -4.5074 0.2552 51 1 11.6328 -4.6528 -1.5262 52 1 1.5160 -4.3660 -1.9556 53 1 2.8423 -3.1771 -1.9432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656908140.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:38 Heat of formation + Delta-G solvation = -129.507856 kcal Electronic energy + Delta-G solvation = -31415.663682 eV Core-core repulsion = 27287.085541 eV Total energy + Delta-G solvation = -4128.578141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.57246 -40.50151 -39.09530 -38.02729 -36.68631 -35.10716 -33.93556 -33.17658 -31.86670 -31.29611 -30.05858 -28.03417 -27.13955 -26.02436 -25.50446 -23.84845 -23.01006 -22.37210 -21.97038 -20.95946 -19.86223 -19.12789 -18.43925 -17.99419 -17.56806 -17.17684 -17.08604 -16.81540 -16.40777 -16.28304 -16.02922 -15.68879 -15.44353 -15.20293 -14.96753 -14.53922 -14.48502 -14.23700 -14.07151 -13.86539 -13.54599 -13.21385 -13.10643 -13.01608 -12.85717 -12.76392 -12.61943 -12.51697 -12.28819 -12.24286 -12.08102 -12.05897 -11.96453 -11.74776 -11.56642 -11.42892 -11.39919 -11.28015 -11.03150 -10.70663 -10.67556 -10.57691 -9.61691 -8.94984 -7.99275 -5.26792 1.39303 1.41004 1.51388 1.65527 1.78451 2.51918 2.80985 2.96672 3.32987 3.54444 3.62737 3.75774 3.90231 3.95603 3.97275 4.01890 4.09123 4.13361 4.16632 4.20508 4.23833 4.27540 4.29514 4.42511 4.46466 4.47431 4.52848 4.63591 4.63903 4.76652 4.79596 4.81305 4.87813 4.89723 4.95613 4.96061 5.06080 5.07331 5.17362 5.19520 5.28067 5.33418 5.44650 5.46820 5.50726 5.58292 5.73043 5.94024 6.15263 6.25695 6.56601 7.29465 7.31054 8.04292 8.31167 9.23392 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.003122 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.637134 B = 8967.669336 C =11287.403754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.068 4.068 3 Si 0.964 3.036 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.235 4.235 8 H 0.052 0.948 9 N -0.730 5.730 10 C 0.165 3.835 11 H 0.022 0.978 12 C -0.119 4.119 13 C -0.114 4.114 14 C -0.106 4.106 15 C -0.149 4.149 16 C 0.097 3.903 17 N -0.596 5.596 18 C 0.495 3.505 19 O -0.578 6.578 20 C 0.054 3.946 21 O -0.401 6.401 22 C 0.059 3.941 23 C 0.066 3.934 24 H 0.056 0.944 25 C -0.139 4.139 26 C -0.147 4.147 27 C 0.029 3.971 28 O -0.404 6.404 29 C 0.117 3.883 30 H 0.253 0.747 31 H 0.377 0.623 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.060 0.940 51 H 0.098 0.902 52 H 0.097 0.903 53 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.383 -28.694 -3.094 33.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.793 3.207 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.367 4.367 8 H 0.070 0.930 9 N -0.371 5.371 10 C 0.055 3.945 11 H 0.040 0.960 12 C -0.157 4.157 13 C -0.152 4.152 14 C -0.143 4.143 15 C -0.186 4.186 16 C -0.024 4.024 17 N -0.330 5.330 18 C 0.283 3.717 19 O -0.456 6.456 20 C -0.025 4.025 21 O -0.320 6.320 22 C -0.017 4.017 23 C 0.008 3.992 24 H 0.074 0.926 25 C -0.177 4.177 26 C -0.184 4.184 27 C -0.047 4.047 28 O -0.324 6.324 29 C -0.008 4.008 30 H 0.062 0.938 31 H 0.209 0.791 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.112 0.888 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.102 0.898 50 H 0.079 0.921 51 H 0.116 0.884 52 H 0.116 0.884 53 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 16.606 -27.679 -2.954 32.414 hybrid contribution -0.003 1.689 0.177 1.698 sum 16.604 -25.991 -2.777 30.966 Atomic orbital electron populations 1.69775 1.05991 1.26033 1.59588 1.25399 0.96431 1.00439 1.03763 0.85284 0.77520 0.80255 0.77613 1.21179 1.20978 1.20932 1.19408 0.90550 0.85726 1.40981 0.92960 1.42489 1.05360 1.00710 1.88524 1.20810 0.93952 0.85465 0.94230 0.95964 1.21986 0.98411 0.95034 1.00276 1.21630 0.98651 0.95078 0.99840 1.21725 1.02873 0.95813 0.93903 1.22330 0.96408 1.03128 0.96783 1.22057 0.98139 0.82249 0.99998 1.47880 1.09846 1.12050 1.63246 1.21098 0.83329 0.89945 0.77303 1.90779 1.79046 1.27830 1.47979 1.22372 0.83917 0.94004 1.02195 1.88077 1.20658 1.37661 1.85584 1.23037 0.86155 0.90551 1.01957 1.22956 0.93618 0.90305 0.92340 0.92584 1.22932 0.93870 0.98589 1.02305 1.23133 0.99444 0.94440 1.01406 1.23811 0.80658 0.97706 1.02525 1.89008 1.20873 1.60955 1.61551 1.22022 0.91534 0.88116 0.99100 0.93807 0.79077 0.89817 0.93957 0.92323 0.93947 0.90766 0.89680 0.91605 0.87628 0.87178 0.89921 0.86854 0.87459 0.88725 0.91141 0.88808 0.87996 0.87981 0.89758 0.92130 0.88414 0.88444 0.95684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.67 13.06 21.65 0.28 -61.38 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.96 51.12 29.55 68.60 2.03 53.15 16 4 H -0.28 -14.75 7.11 99.48 0.71 -14.04 16 5 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.28 -15.03 7.11 99.48 0.71 -14.32 16 7 C -0.23 -14.74 9.91 84.03 0.83 -13.91 16 8 H 0.05 3.47 7.83 -2.91 -0.02 3.45 16 9 N -0.73 -40.49 5.12 -322.70 -1.65 -42.14 16 10 C 0.16 7.37 2.39 45.04 0.11 7.48 16 11 H 0.02 1.18 6.13 -2.39 -0.01 1.17 16 12 C -0.12 -4.08 4.97 30.68 0.15 -3.92 16 13 C -0.11 -2.99 5.40 30.73 0.17 -2.82 16 14 C -0.11 -1.71 5.75 30.87 0.18 -1.53 16 15 C -0.15 -2.34 5.45 30.70 0.17 -2.17 16 16 C 0.10 1.60 5.88 86.75 0.51 2.11 16 17 N -0.60 -17.64 1.68 -823.94 -1.39 -19.03 16 18 C 0.49 17.35 6.23 87.66 0.55 17.90 16 19 O -0.58 -28.92 15.24 16.02 0.24 -28.67 16 20 C 0.05 1.25 4.80 71.23 0.34 1.59 16 21 O -0.40 -12.05 9.87 -126.82 -1.25 -13.30 16 22 C 0.06 1.11 5.39 71.98 0.39 1.50 16 23 C 0.07 1.35 3.71 30.96 0.11 1.46 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 C -0.14 -1.50 6.64 31.58 0.21 -1.29 16 26 C -0.15 -1.51 7.15 31.89 0.23 -1.29 16 27 C 0.03 0.50 7.72 72.66 0.56 1.06 16 28 O -0.40 -10.93 11.18 -147.43 -1.65 -12.58 16 29 C 0.12 4.57 4.76 86.07 0.41 4.98 16 30 H 0.25 15.58 8.31 -92.70 -0.77 14.81 16 31 H 0.38 21.44 7.80 -92.70 -0.72 20.71 16 32 H 0.08 2.51 5.47 -2.38 -0.01 2.50 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.29 5.37 -2.39 -0.01 1.27 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.96 7.87 -2.39 -0.02 0.94 16 38 H 0.07 1.41 3.35 -2.38 -0.01 1.40 16 39 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 1.09 5.76 -2.39 -0.01 1.07 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.11 1.68 7.51 -2.39 -0.02 1.66 16 43 H 0.11 1.73 8.09 -2.39 -0.02 1.71 16 44 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.10 0.66 7.70 -2.38 -0.02 0.64 16 48 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 51 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.10 3.28 6.07 -2.39 -0.01 3.26 16 53 H 0.02 1.21 8.07 -2.38 -0.02 1.19 16 Total: -1.00 -90.99 399.88 2.18 -88.82 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: 0.18 Total: 27.76 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.38 Total: 7.39 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -2.76 Total: -122.56 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -2.66 Total: -54.56 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.03 Total: 53.15 kcal Total: -90.99 2.18 -88.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656908140.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.690 kcal (2) G-P(sol) polarization free energy of solvation -90.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds