Wall clock time and date at job start Sat Apr 11 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48501 * 109.46941 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46919 * 299.99862 * 3 2 1 6 6 H 1.48496 * 109.47143 * 59.99954 * 3 2 1 7 7 C 1.38807 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00342 * 157.23097 * 7 2 1 9 9 N 1.36942 * 120.00091 * 337.23356 * 7 2 1 10 10 C 1.46504 * 119.99639 * 326.29535 * 9 7 2 11 11 C 1.52998 * 109.46638 * 264.40968 * 10 9 7 12 12 O 1.42902 * 109.47437 * 65.00232 * 11 10 9 13 13 C 1.46494 * 120.00317 * 146.28969 * 9 7 2 14 14 H 1.08996 * 109.53030 * 179.91897 * 13 9 7 15 15 C 1.53040 * 109.49890 * 59.83800 * 13 9 7 16 16 C 1.53034 * 109.54361 * 178.68329 * 15 13 9 17 17 C 1.53197 * 109.31185 * 61.36587 * 16 15 13 18 18 N 1.46928 * 108.77329 * 305.36930 * 17 16 15 19 19 C 1.34779 * 120.62824 * 233.62767 * 18 17 16 20 20 O 1.21281 * 120.00076 * 179.97438 * 19 18 17 21 21 C 1.50699 * 120.00070 * 359.97438 * 19 18 17 22 22 C 1.52998 * 109.47429 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.47371 * 180.02562 * 22 21 19 24 24 H 1.09003 * 110.33318 * 307.25021 * 23 22 21 25 25 C 1.54483 * 110.37428 * 185.00320 * 23 22 21 26 26 C 1.54508 * 104.06201 * 217.18845 * 25 23 22 27 27 C 1.54475 * 104.06596 * 359.97438 * 26 25 23 28 28 O 1.44425 * 110.37408 * 69.62100 * 23 22 21 29 29 C 1.46917 * 118.74188 * 53.60800 * 18 17 16 30 30 H 0.97000 * 120.00193 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.47238 * 24.41150 * 10 9 7 32 32 H 1.09001 * 109.47066 * 144.41799 * 10 9 7 33 33 H 1.09003 * 109.47642 * 185.00018 * 11 10 9 34 34 H 1.09005 * 109.47485 * 305.00145 * 11 10 9 35 35 H 0.96693 * 114.00548 * 179.97438 * 12 11 10 36 36 H 1.09000 * 109.45877 * 58.66000 * 15 13 9 37 37 H 1.09010 * 109.44827 * 298.70492 * 15 13 9 38 38 H 1.08992 * 109.49857 * 301.41992 * 16 15 13 39 39 H 1.08995 * 109.50044 * 181.31507 * 16 15 13 40 40 H 1.08994 * 109.58783 * 185.58138 * 17 16 15 41 41 H 1.09003 * 109.58498 * 65.15325 * 17 16 15 42 42 H 1.09000 * 109.47286 * 300.00004 * 21 19 18 43 43 H 1.09009 * 109.46997 * 59.99796 * 21 19 18 44 44 H 1.09000 * 109.46988 * 300.00307 * 22 21 19 45 45 H 1.08999 * 109.47240 * 60.00096 * 22 21 19 46 46 H 1.09002 * 110.50573 * 335.83259 * 25 23 22 47 47 H 1.08994 * 110.51367 * 98.53758 * 25 23 22 48 48 H 1.09009 * 110.51173 * 118.64274 * 26 25 23 49 49 H 1.08995 * 110.51225 * 241.35038 * 26 25 23 50 50 H 1.08996 * 110.37947 * 142.80860 * 27 26 25 51 51 H 1.09001 * 110.37217 * 265.15334 * 27 26 25 52 52 H 1.08998 * 109.58903 * 66.17702 * 29 18 17 53 53 H 1.08998 * 109.59053 * 186.60539 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0271 -1.2387 -0.3614 9 7 1.4056 -2.3417 0.4600 10 6 0.4396 -2.2663 1.5589 11 6 1.1486 -2.5615 2.8821 12 8 2.1059 -1.5347 3.1492 13 6 1.7246 -3.6361 -0.1474 14 1 1.1521 -4.4212 0.3464 15 6 3.2204 -3.9191 0.0094 16 6 3.5489 -5.2859 -0.5957 17 6 3.2135 -5.2721 -2.0904 18 7 1.8134 -4.8590 -2.2571 19 6 0.9533 -5.6177 -2.9650 20 8 -0.2002 -5.2661 -3.0949 21 6 1.4247 -6.9029 -3.5951 22 6 0.2607 -7.5656 -4.3344 23 6 0.7392 -8.8707 -4.9736 24 1 1.6250 -8.6914 -5.5830 25 6 -0.3854 -9.4942 -5.8297 26 6 -0.2314 -11.0147 -5.6020 27 6 0.9684 -11.1300 -4.6358 28 8 1.0177 -9.8565 -3.9555 29 6 1.3686 -3.6036 -1.6371 30 1 -0.4850 0.8400 0.0004 31 1 0.0064 -1.2667 1.5939 32 1 -0.3508 -2.9995 1.3987 33 1 0.4155 -2.5931 3.6881 34 1 1.6568 -3.5235 2.8154 35 1 2.5941 -1.6570 3.9748 36 1 3.4811 -3.9184 1.0677 37 1 3.7919 -3.1470 -0.5059 38 1 2.9592 -6.0554 -0.0977 39 1 4.6099 -5.4970 -0.4629 40 1 3.3518 -6.2705 -2.5052 41 1 3.8663 -4.5668 -2.6048 42 1 2.2283 -6.6887 -4.2997 43 1 1.7915 -7.5749 -2.8190 44 1 -0.5426 -7.7798 -3.6295 45 1 -0.1064 -6.8939 -5.1104 46 1 -1.3615 -9.1533 -5.4848 47 1 -0.2444 -9.2495 -6.8824 48 1 -1.1315 -11.4255 -5.1445 49 1 -0.0142 -11.5216 -6.5421 50 1 0.8035 -11.9356 -3.9204 51 1 1.8897 -11.2990 -5.1932 52 1 1.8708 -2.7622 -2.1145 53 1 0.2896 -3.5011 -1.7526 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689202765.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:20 Heat of formation + Delta-G solvation = -140.480926 kcal Electronic energy + Delta-G solvation = -31200.525085 eV Core-core repulsion = 27071.471116 eV Total energy + Delta-G solvation = -4129.053969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.25128 -40.26006 -39.04446 -37.70125 -36.26326 -34.63117 -33.77971 -32.91528 -32.83068 -31.35755 -29.70021 -28.88594 -26.51229 -26.01976 -24.70383 -23.75095 -22.61275 -22.15767 -21.82207 -21.36607 -19.74193 -18.40089 -18.23375 -18.00874 -17.41924 -16.90339 -16.77118 -16.61384 -16.37601 -16.08780 -15.98369 -15.50582 -15.16026 -15.01045 -14.64335 -14.53023 -14.40321 -14.21078 -14.05688 -13.69978 -13.57999 -13.43029 -13.08568 -13.00726 -12.78987 -12.72179 -12.57432 -12.42885 -12.31498 -12.21943 -11.93431 -11.84765 -11.80638 -11.75249 -11.61092 -11.57881 -11.45193 -11.27683 -10.75326 -10.65243 -10.63681 -10.42540 -9.58648 -8.53510 -7.76573 -5.29794 1.44629 1.48771 1.57208 1.68986 2.07308 2.56796 3.00811 3.34749 3.49104 3.56819 3.76616 3.79096 3.81324 4.05994 4.07695 4.09559 4.15245 4.17823 4.19294 4.33056 4.42864 4.46186 4.49897 4.52964 4.56811 4.65567 4.67993 4.75547 4.77610 4.83673 4.88234 4.92609 4.95274 5.00496 5.01353 5.03676 5.09296 5.11122 5.13408 5.20214 5.22203 5.30769 5.47147 5.57703 5.60963 5.74014 5.81022 5.99512 6.50566 6.56241 7.18169 7.24165 7.26022 7.92975 8.42254 9.22890 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018812 B = 0.002451 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.054009 B =11421.766116 C =11838.193101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.043 4.043 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.297 1.297 7 C -0.222 4.222 8 H 0.057 0.943 9 N -0.582 5.582 10 C 0.135 3.865 11 C 0.074 3.926 12 O -0.572 6.572 13 C 0.166 3.834 14 H 0.045 0.955 15 C -0.114 4.114 16 C -0.123 4.123 17 C 0.103 3.897 18 N -0.609 5.609 19 C 0.500 3.500 20 O -0.600 6.600 21 C -0.122 4.122 22 C -0.095 4.095 23 C 0.078 3.922 24 H 0.090 0.910 25 C -0.155 4.155 26 C -0.153 4.153 27 C 0.038 3.962 28 O -0.396 6.396 29 C 0.123 3.877 30 H 0.245 0.755 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.376 0.624 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.112 0.888 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.071 0.929 49 H 0.094 0.906 50 H 0.096 0.904 51 H 0.074 0.926 52 H 0.049 0.951 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 -23.602 -7.657 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.238 4.238 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.226 1.226 6 H -0.224 1.224 7 C -0.353 4.353 8 H 0.074 0.926 9 N -0.302 5.302 10 C 0.008 3.992 11 C -0.006 4.006 12 O -0.377 6.377 13 C 0.059 3.941 14 H 0.064 0.936 15 C -0.154 4.154 16 C -0.161 4.161 17 C -0.018 4.018 18 N -0.341 5.341 19 C 0.290 3.710 20 O -0.481 6.481 21 C -0.161 4.161 22 C -0.133 4.133 23 C 0.020 3.980 24 H 0.108 0.892 25 C -0.193 4.193 26 C -0.191 4.191 27 C -0.039 4.039 28 O -0.316 6.316 29 C -0.002 4.002 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.222 0.778 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.139 0.861 43 H 0.130 0.870 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.111 0.889 48 H 0.090 0.910 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.092 0.908 52 H 0.067 0.933 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.067 -23.019 -8.070 25.396 hybrid contribution -0.245 1.359 0.636 1.520 sum 6.822 -21.660 -7.433 23.895 Atomic orbital electron populations 1.70137 1.06783 1.25339 1.54965 1.25605 0.95466 1.01163 1.01564 0.85446 0.79102 0.81143 0.76101 1.19225 1.22562 1.22427 1.18962 0.93997 0.86425 1.35877 0.92553 1.43928 1.48938 1.02285 1.35059 1.21008 0.90521 1.01951 0.85712 1.22775 0.90794 0.89525 0.97518 1.86760 1.55874 1.49781 1.45334 1.20778 0.95490 0.87452 0.90402 0.93625 1.21798 0.95944 0.97161 1.00477 1.21898 1.03140 0.96290 0.94804 1.22070 0.79832 1.02465 0.97470 1.48425 1.12033 1.22377 1.51271 1.21613 0.84902 0.86490 0.78002 1.90670 1.20680 1.74206 1.62558 1.21672 1.00560 0.92103 1.01787 1.21357 0.97178 0.94885 0.99905 1.23086 0.97737 0.88370 0.88777 0.89214 1.23023 0.99241 0.95716 1.01335 1.22948 0.99288 0.95894 1.00965 1.23584 0.98136 0.86417 0.95716 1.89137 1.92437 1.16634 1.33364 1.21768 0.98437 0.84784 0.95211 0.94544 0.91110 0.94906 0.93727 0.94344 0.77805 0.92661 0.93183 0.91558 0.87818 0.86281 0.90669 0.86057 0.86984 0.92967 0.90572 0.91677 0.88910 0.90971 0.88728 0.88583 0.90795 0.93300 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 11.36 21.65 0.25 -56.53 16 2 C -0.04 -2.45 4.90 84.86 0.42 -2.03 16 3 Si 0.95 47.36 29.61 68.60 2.03 49.40 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 6 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 7 C -0.22 -12.17 7.95 84.03 0.67 -11.50 16 8 H 0.06 3.08 6.86 -2.91 -0.02 3.06 16 9 N -0.58 -28.97 2.35 -677.61 -1.59 -30.56 16 10 C 0.13 6.59 5.57 86.38 0.48 7.07 16 11 C 0.07 2.88 7.39 71.98 0.53 3.41 16 12 O -0.57 -23.49 13.40 -148.98 -2.00 -25.49 16 13 C 0.17 6.94 2.78 45.07 0.13 7.06 16 14 H 0.05 1.90 7.87 -2.39 -0.02 1.88 16 15 C -0.11 -3.83 5.11 30.62 0.16 -3.67 16 16 C -0.12 -2.81 6.08 30.67 0.19 -2.63 16 17 C 0.10 2.30 6.34 86.36 0.55 2.84 16 18 N -0.61 -20.01 2.97 -818.91 -2.43 -22.44 16 19 C 0.50 16.67 7.70 87.66 0.67 17.35 16 20 O -0.60 -26.38 15.40 -3.03 -0.05 -26.43 16 21 C -0.12 -2.61 3.98 29.85 0.12 -2.49 16 22 C -0.10 -2.12 4.13 30.59 0.13 -1.99 16 23 C 0.08 1.27 3.25 31.10 0.10 1.38 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 C -0.16 -2.16 6.63 31.61 0.21 -1.95 16 26 C -0.15 -1.69 7.09 31.61 0.22 -1.47 16 27 C 0.04 0.47 7.63 72.48 0.55 1.02 16 28 O -0.40 -7.58 11.13 -148.98 -1.66 -9.23 16 29 C 0.12 5.35 5.76 86.37 0.50 5.85 16 30 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.07 4.07 5.35 -2.39 -0.01 4.06 16 32 H 0.03 1.57 8.04 -2.39 -0.02 1.55 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.38 10.73 9.12 -74.06 -0.68 10.05 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.83 7.02 -2.38 -0.02 1.82 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.12 1.74 5.93 -2.39 -0.01 1.72 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.12 1.84 7.94 -2.39 -0.02 1.82 16 43 H 0.11 2.12 7.56 -2.38 -0.02 2.10 16 44 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 45 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 46 H 0.06 1.08 7.87 -2.39 -0.02 1.06 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 49 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.05 2.33 7.50 -2.39 -0.02 2.31 16 53 H 0.04 2.05 7.00 -2.39 -0.02 2.04 16 Total: -1.00 -78.52 410.13 0.38 -78.14 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.21 Total: 24.91 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 5.62 Total: 18.24 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -3.78 Total: -109.54 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -3.70 Total: -61.15 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.40 kcal Total: -78.52 0.38 -78.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689202765.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.339 kcal (2) G-P(sol) polarization free energy of solvation -78.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds