Wall clock time and date at job start Sat Apr 11 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 120.00411 * 2 1 4 4 H 1.48500 * 109.46881 * 240.00087 * 3 2 1 5 5 H 1.48497 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47010 * 119.99994 * 3 2 1 7 7 C 1.38815 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00732 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99339 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99655 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47052 * 174.96696 * 10 9 7 12 12 N 1.46501 * 110.43400 * 307.73512 * 11 10 9 13 13 C 1.34780 * 119.99802 * 302.03244 * 12 11 10 14 14 O 1.21281 * 120.00028 * 354.81993 * 13 12 11 15 15 C 1.50703 * 119.99784 * 174.81974 * 13 12 11 16 16 C 1.52995 * 109.46813 * 180.02562 * 15 13 12 17 17 O 1.42906 * 109.46833 * 180.02562 * 16 15 13 18 18 C 1.42898 * 114.00093 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47544 * 179.97438 * 18 17 16 20 20 H 1.09000 * 109.82032 * 305.56691 * 19 18 17 21 21 C 1.54378 * 109.83321 * 184.58634 * 19 18 17 22 22 C 1.55303 * 102.25167 * 219.12983 * 21 19 18 23 23 C 1.54944 * 100.94239 * 34.13232 * 22 21 19 24 24 O 1.43236 * 109.82751 * 66.44715 * 19 18 17 25 25 C 1.54888 * 110.59628 * 70.35053 * 11 10 9 26 26 C 1.54889 * 102.74852 * 156.67395 * 25 11 10 27 27 C 1.54266 * 104.19828 * 322.06063 * 26 25 11 28 28 C 1.53883 * 106.59584 * 23.60522 * 27 26 25 29 29 H 0.97009 * 119.99216 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00329 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.47050 * 54.97197 * 10 9 7 32 32 H 1.08995 * 109.47428 * 294.97045 * 10 9 7 33 33 H 0.97002 * 120.00008 * 122.04367 * 12 11 10 34 34 H 1.08999 * 109.47072 * 60.00291 * 15 13 12 35 35 H 1.09001 * 109.46708 * 299.99939 * 15 13 12 36 36 H 1.08999 * 109.47238 * 60.00179 * 16 15 13 37 37 H 1.09001 * 109.47259 * 299.99388 * 16 15 13 38 38 H 1.08999 * 109.47253 * 300.00093 * 18 17 16 39 39 H 1.09005 * 109.47380 * 59.99681 * 18 17 16 40 40 H 1.09000 * 110.84631 * 337.31579 * 21 19 18 41 41 H 1.09001 * 110.84965 * 100.94144 * 21 19 18 42 42 H 1.09000 * 111.12547 * 276.21215 * 22 21 19 43 43 H 1.09001 * 111.16287 * 152.07061 * 22 21 19 44 44 H 1.09004 * 110.31099 * 204.63656 * 23 22 21 45 45 H 1.08997 * 110.39434 * 82.51867 * 23 22 21 46 46 H 1.09002 * 110.75814 * 274.99150 * 25 11 10 47 47 H 1.09000 * 110.75863 * 38.36024 * 25 11 10 48 48 H 1.09000 * 110.48960 * 203.37921 * 26 25 11 49 49 H 1.09004 * 110.59673 * 80.79195 * 26 25 11 50 50 H 1.09000 * 110.02999 * 264.32718 * 27 26 25 51 51 H 1.08994 * 110.07603 * 142.91291 * 27 26 25 52 52 H 1.08997 * 110.02775 * 240.71685 * 28 27 26 53 53 H 1.08998 * 110.07071 * 119.30922 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0684 -4.8169 0.1271 12 7 0.1825 -4.6106 1.2755 13 6 0.7027 -4.4647 2.5103 14 8 1.8954 -4.5977 2.6854 15 6 -0.1977 -4.1364 3.6733 16 6 0.6381 -4.0259 4.9499 17 8 -0.2158 -3.7152 6.0529 18 6 0.4692 -3.5885 7.3006 19 6 -0.5376 -3.2563 8.4037 20 1 -1.1116 -2.3722 8.1262 21 6 0.2061 -3.0043 9.7329 22 6 -0.7338 -3.6785 10.7693 23 6 -1.2763 -4.8711 9.9422 24 8 -1.4210 -4.3656 8.6054 25 6 0.2423 -4.9728 -1.1738 26 6 -0.2081 -6.4537 -1.1173 27 6 1.0097 -7.1975 -0.5312 28 6 1.8214 -6.1567 0.2599 29 1 -0.4849 0.8402 0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.7504 -3.6766 0.8421 32 1 2.6153 -3.7547 -0.9310 33 1 -0.7785 -4.5791 1.1472 34 1 -0.9403 -4.9255 3.7919 35 1 -0.7017 -3.1882 3.4861 36 1 1.3804 -3.2366 4.8310 37 1 1.1424 -4.9739 5.1373 38 1 0.9708 -4.5270 7.5366 39 1 1.2075 -2.7897 7.2304 40 1 1.1847 -3.4843 9.7269 41 1 0.2978 -1.9361 9.9297 42 1 -1.5395 -3.0064 11.0646 43 1 -0.1760 -4.0251 11.6393 44 1 -2.2421 -5.1933 10.3315 45 1 -0.5673 -5.6988 9.9591 46 1 -0.6201 -4.3062 -1.1660 47 1 0.8641 -4.7914 -2.0504 48 1 -0.4348 -6.8220 -2.1178 49 1 -1.0741 -6.5665 -0.4649 50 1 1.6171 -7.6114 -1.3361 51 1 0.6769 -7.9950 0.1330 52 1 2.8227 -6.0657 -0.1611 53 1 1.8825 -6.4483 1.3084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698630789.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:22 Heat of formation + Delta-G solvation = -155.084484 kcal Electronic energy + Delta-G solvation = -30608.341988 eV Core-core repulsion = 26478.654762 eV Total energy + Delta-G solvation = -4129.687227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.39669 -40.56116 -39.14119 -38.33109 -36.18848 -34.41697 -33.40282 -33.12038 -32.65036 -31.08529 -29.75038 -29.49699 -26.55665 -26.25480 -24.76317 -23.96005 -22.62959 -22.21215 -21.65190 -21.24000 -20.34932 -19.13265 -18.45205 -18.09842 -17.31270 -17.12992 -17.02494 -16.85574 -16.48650 -16.16507 -15.97439 -15.69233 -15.53136 -15.07669 -14.80824 -14.71534 -14.49658 -14.32008 -14.03883 -13.73707 -13.72737 -13.46747 -13.18028 -12.80120 -12.68596 -12.56324 -12.39565 -12.35171 -12.32368 -12.21432 -12.18946 -12.08055 -12.05734 -11.91165 -11.75203 -11.72566 -11.64827 -11.27203 -11.01396 -10.67792 -10.59137 -10.49761 -9.87447 -8.95061 -7.94652 -5.20870 1.43906 1.46619 1.52770 1.72698 2.08390 2.54860 2.74218 2.95659 3.37753 3.52900 3.54344 3.72534 3.79071 3.81638 3.93366 3.95892 4.01988 4.13620 4.16387 4.19294 4.28061 4.38220 4.42385 4.43812 4.48562 4.57104 4.61522 4.64531 4.70593 4.76492 4.79984 4.82546 4.86657 4.88987 4.92440 4.93823 4.94431 5.02548 5.09629 5.14210 5.18076 5.23670 5.31717 5.36158 5.46197 5.53122 5.77902 6.02130 6.20160 6.27716 6.68125 7.35113 7.38186 8.09775 8.38799 9.27868 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008388 B = 0.002889 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.206557 B = 9689.401817 C =12328.494444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.061 0.939 9 N -0.728 5.728 10 C 0.147 3.853 11 C 0.171 3.829 12 N -0.699 5.699 13 C 0.524 3.476 14 O -0.574 6.574 15 C -0.131 4.131 16 C 0.089 3.911 17 O -0.398 6.398 18 C 0.047 3.953 19 C 0.079 3.921 20 H 0.079 0.921 21 C -0.145 4.145 22 C -0.148 4.148 23 C 0.036 3.964 24 O -0.400 6.400 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.114 4.114 28 C -0.119 4.119 29 H 0.251 0.749 30 H 0.378 0.622 31 H 0.015 0.985 32 H 0.019 0.981 33 H 0.409 0.591 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.071 0.929 52 H 0.063 0.937 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.666 -14.788 15.322 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.079 0.921 9 N -0.371 5.371 10 C 0.019 3.981 11 C 0.084 3.916 12 N -0.350 5.350 13 C 0.311 3.689 14 O -0.454 6.454 15 C -0.171 4.171 16 C 0.012 3.988 17 O -0.317 6.317 18 C -0.029 4.029 19 C 0.021 3.979 20 H 0.097 0.903 21 C -0.182 4.182 22 C -0.185 4.185 23 C -0.040 4.040 24 O -0.320 6.320 25 C -0.154 4.154 26 C -0.151 4.151 27 C -0.152 4.152 28 C -0.159 4.159 29 H 0.060 0.940 30 H 0.210 0.790 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.245 0.755 34 H 0.141 0.859 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.090 0.910 52 H 0.082 0.918 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.002 -14.831 15.252 21.485 hybrid contribution 0.353 1.437 -0.058 1.481 sum -2.649 -13.394 15.193 20.427 Atomic orbital electron populations 1.69772 1.06112 1.25964 1.59340 1.25408 0.96434 1.00452 1.03741 0.85314 0.77370 0.79786 0.77903 1.20515 1.21593 1.21162 1.19476 0.91020 0.85751 1.41434 0.92075 1.42241 1.05452 1.00268 1.89125 1.21102 0.94251 0.85572 0.97132 1.21299 0.90418 0.93709 0.86152 1.45713 1.10484 1.72997 1.05823 1.20514 0.88478 0.75226 0.84645 1.90630 1.17489 1.51918 1.85370 1.21395 0.99010 1.05475 0.91228 1.21947 0.91809 0.99661 0.85432 1.87835 1.35389 1.92027 1.16475 1.23127 0.95144 1.01034 0.83617 1.22857 0.90747 0.89728 0.94575 0.90279 1.23137 0.99725 1.03692 0.91658 1.23266 0.99612 0.96936 0.98673 1.23646 1.02191 0.96829 0.81367 1.88515 1.62324 1.48745 1.32442 1.22686 0.99389 0.98129 0.95213 1.22360 0.97853 0.92849 1.02041 1.22102 0.96568 0.97166 0.99353 1.22382 0.99010 0.93557 1.00908 0.93993 0.78952 0.96693 0.96350 0.75533 0.85868 0.88564 0.94485 0.92531 0.92479 0.91493 0.89308 0.88155 0.89753 0.87589 0.88760 0.91787 0.91401 0.90499 0.89741 0.90664 0.90647 0.90977 0.91820 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.64 13.06 21.65 0.28 -58.36 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.97 47.61 29.55 68.60 2.03 49.64 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.24 -14.34 9.99 84.03 0.84 -13.50 16 8 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 9 N -0.73 -38.06 5.31 -343.44 -1.82 -39.89 16 10 C 0.15 6.52 4.75 86.38 0.41 6.93 16 11 C 0.17 5.68 0.40 4.68 0.00 5.68 16 12 N -0.70 -22.35 4.54 -418.07 -1.90 -24.25 16 13 C 0.52 18.66 7.07 87.66 0.62 19.28 16 14 O -0.57 -24.33 12.93 -3.03 -0.04 -24.37 16 15 C -0.13 -3.99 6.07 29.85 0.18 -3.81 16 16 C 0.09 2.79 5.23 71.98 0.38 3.17 16 17 O -0.40 -12.28 10.33 -146.52 -1.51 -13.80 16 18 C 0.05 1.15 5.47 71.98 0.39 1.55 16 19 C 0.08 1.67 3.81 31.06 0.12 1.79 16 20 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 21 C -0.14 -1.91 6.54 31.85 0.21 -1.70 16 22 C -0.15 -1.59 7.16 32.05 0.23 -1.36 16 23 C 0.04 0.55 7.78 72.65 0.56 1.11 16 24 O -0.40 -9.79 11.00 -146.52 -1.61 -11.40 16 25 C -0.12 -3.26 5.66 31.88 0.18 -3.08 16 26 C -0.11 -2.31 6.79 31.67 0.22 -2.09 16 27 C -0.11 -2.42 6.80 31.32 0.21 -2.21 16 28 C -0.12 -3.48 5.67 31.32 0.18 -3.30 16 29 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 30 H 0.38 20.16 7.27 -92.71 -0.67 19.49 16 31 H 0.02 0.76 6.54 -2.39 -0.02 0.74 16 32 H 0.02 0.83 8.02 -2.39 -0.02 0.81 16 33 H 0.41 10.95 8.49 -92.71 -0.79 10.16 16 34 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 37 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.09 1.03 7.85 -2.39 -0.02 1.01 16 41 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 47 H 0.08 2.25 7.97 -2.39 -0.02 2.24 16 48 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 50 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.06 1.91 7.84 -2.39 -0.02 1.89 16 53 H 0.06 1.92 6.55 -2.39 -0.02 1.90 16 Total: -1.00 -75.00 417.68 0.05 -74.95 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: -0.57 Total: 42.53 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.20 Total: 4.94 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -3.44 Total: -122.49 kcal Atomic # 8 Polarization: -46.40 SS G_CDS: -3.16 Total: -49.56 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -75.00 0.05 -74.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698630789.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.133 kcal (2) G-P(sol) polarization free energy of solvation -75.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds